RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 PPP1R12BO60237 982 aaPredicted RBP0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 BNIP3LO60238 219 aa0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 MAP3K6O95382 1288 aa0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 WNT11O96014 354 aa0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 HMGB1P09429 215 aaKnown RBP0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 FURINP09958 794 aa0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 SKIP12755 728 aa0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 JUNBP17275 347 aaPredicted RBP0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 BRD2P25440 801 aaKnown RBP0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 NOS2P35228 1153 aa0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 ADD1P35611 737 aaKnown RBP0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 USP5P45974 858 aa0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 DGKGP49619 791 aa0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 ARSDP51689 593 aa0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 SEC13P55735 322 aa0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 KCNQ4P56696 695 aa0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 PLAURQ03405 335 aa0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 TNP2Q05952 138 aa0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 EHHADHQ08426 723 aa0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 HYAL2Q12891 473 aa0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 TEAD4Q15561 434 aa0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 C4orf17Q53FE4 359 aa0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 RNFT1Q5M7Z0 435 aa0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 LCE4AQ5TA78 99 aa0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 LCE5AQ5TCM9 118 aa0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 TTC39BQ5VTQ0 682 aaPredicted RBP0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 DUSP27Q5VZP5 1158 aa0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 ANKRD34AQ69YU3 496 aa0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 FDX2Q6P4F2 183 aa0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 FAM35AQ86V20 835 aa0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 GPR161Q8N6U8 529 aaKnown RBP0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 ABTB2Q8N961 1025 aa0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 KLHL23Q8NBE8 558 aa0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 IL27Q8NEV9 243 aa0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 PIK3R5Q8WYR1 880 aa0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 TTC9Q92623 222 aa0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 BHMTQ93088 406 aa0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 WNT8BQ93098 351 aa0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 L3MBTL2Q969R5 705 aa0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 SLC4A9Q96Q91 983 aa0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 FAM117AQ9C073 453 aa0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 OSBPL3Q9H4L5 887 aa0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 AKTIPQ9H8T0 292 aa0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 CYP4F12Q9HCS2 524 aa0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 RAB6BQ9NRW1 208 aa0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 DNAAF2Q9NVR5 837 aaKnown RBP0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 FAM53CQ9NYF3 392 aa0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 GTF3C5Q9Y5Q8 519 aaPredicted RBP0.94□□□□□ -2.26
RNU4-54P-201ENST00000516428 A0A0A0MRY4 1105 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 KRBA1A5PL33 1030 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 TGFBR3LH3BV60 316 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 FOXO3O43524 673 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 DYRK3O43781 588 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 IL2RAP01589 272 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 RARAP10276 462 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 GLB1P16278 677 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 PTPRAP18433 802 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 EIF2AK2P19525 551 aaKnown RBP0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 CD33P20138 364 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 RASA1P20936 1047 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 RFX1P22670 979 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 ITGB7P26010 798 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 RXRBP28702 533 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 SOX18P35713 384 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 SCNN1AP37088 669 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 USP11P51784 963 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 HIRAP54198 1017 aaPredicted RBP0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 NRLP54845 237 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 PCBP4P57723 403 aaKnown RBP0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 CHMP4BP1P59074 171 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 FGD1P98174 961 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 KRT76Q01546 638 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 KRTAP1-1Q07627 177 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 AAMPQ13685 434 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 DOC2BQ14184 412 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 MAP7Q14244 749 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 GAS6Q14393 721 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 MTFR1Q15390 333 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 C11orf91Q3C1V1 193 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 KRTAP19-4Q3LI73 84 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 CYP27C1Q4G0S4 372 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 PRSS36Q5K4E3 855 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 CCDC102BQ68D86 513 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 MSL1Q68DK7 614 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 ALKBH2Q6NS38 261 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 PSAPL1Q6NUJ1 521 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 PAOXQ6QHF9 649 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 LINC00114Q6XXX2 140 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 LRRC69Q6ZNQ3 347 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 CD163Q86VB7 1156 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 FBXO11Q86XK2 927 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 ZDHHC13Q8IUH4 622 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 KSR1Q8IVT5 923 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 PLEKHM2Q8IWE5 1019 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 TMEM130Q8N3G9 435 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 PROCA1Q8NCQ7 364 aaPredicted RBP0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 ZSCAN18Q8TBC5 510 aaPredicted RBP0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 FAM200AQ8TCP9 573 aa0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 CHMP7Q8WUX9 453 aaPredicted RBP0.93□□□□□ -2.26
RNU4-54P-201ENST00000516428 MISP3Q96FF7 219 aa0.93□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms