RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 TNRC6CQ9HCJ0 1690 aaKnown RBP20.84■□□□□ 0.93
MSH5-SAPCD1-206ENST00000491552 KSR2Q6VAB6 950 aa20.84■□□□□ 0.93
MSH5-SAPCD1-206ENST00000491552 ADCY9O60503 1353 aa20.84■□□□□ 0.93
MSH5-SAPCD1-206ENST00000491552 PI4KAP2A4QPH2 592 aa20.83■□□□□ 0.93
MSH5-SAPCD1-206ENST00000491552 ATP5J2-PTCD1G3V325 749 aa20.83■□□□□ 0.93
MSH5-SAPCD1-206ENST00000491552 DALRD3Q5D0E6 543 aaKnown RBP20.83■□□□□ 0.93
MSH5-SAPCD1-206ENST00000491552 PI4KAP1Q8N8J0 262 aa20.83■□□□□ 0.93
MSH5-SAPCD1-206ENST00000491552 MYD88Q99836 296 aa20.83■□□□□ 0.93
MSH5-SAPCD1-206ENST00000491552 METTL22Q9BUU2 404 aaPredicted RBP20.83■□□□□ 0.93
MSH5-SAPCD1-206ENST00000491552 MAP3K2Q9Y2U5 619 aa20.83■□□□□ 0.93
MSH5-SAPCD1-206ENST00000491552 TRIM28Q13263 835 aaKnown RBP20.82■□□□□ 0.92
MSH5-SAPCD1-206ENST00000491552 FKBP5Q13451 457 aaPredicted RBP20.82■□□□□ 0.92
MSH5-SAPCD1-206ENST00000491552 ZNF622Q969S3 477 aaKnown RBP eCLIP20.82■□□□□ 0.921e-7■□□□□ 10.9
MSH5-SAPCD1-206ENST00000491552 TRMT112Q9UI30 125 aaKnown RBP20.82■□□□□ 0.92
MSH5-SAPCD1-206ENST00000491552 ARFGEF1Q9Y6D6 1849 aa20.81■□□□□ 0.92
MSH5-SAPCD1-206ENST00000491552 KLRG2A4D1S0 409 aaPredicted RBP20.81■□□□□ 0.92
MSH5-SAPCD1-206ENST00000491552 SRGNP10124 158 aa20.81■□□□□ 0.92
MSH5-SAPCD1-206ENST00000491552 TTLL6Q8N841 843 aa20.81■□□□□ 0.92
MSH5-SAPCD1-206ENST00000491552 ZNF428Q96B54 188 aa20.81■□□□□ 0.92
MSH5-SAPCD1-206ENST00000491552 ZBED9Q6R2W3 1325 aa20.8■□□□□ 0.92
MSH5-SAPCD1-206ENST00000491552 STYK1Q6J9G0 422 aa20.8■□□□□ 0.92
MSH5-SAPCD1-206ENST00000491552 MASTLQ96GX5 879 aa20.8■□□□□ 0.92
MSH5-SAPCD1-206ENST00000491552 SH3TC1Q8TE82 1336 aa20.79■□□□□ 0.92
MSH5-SAPCD1-206ENST00000491552 CT47B1P0C2W7 299 aaPredicted RBP20.79■□□□□ 0.92
MSH5-SAPCD1-206ENST00000491552 NPR1P16066 1061 aa20.79■□□□□ 0.92
MSH5-SAPCD1-206ENST00000491552 NEXNQ0ZGT2 675 aa20.79■□□□□ 0.92
MSH5-SAPCD1-206ENST00000491552 SLC10A5Q5PT55 438 aa20.78■□□□□ 0.92
MSH5-SAPCD1-206ENST00000491552 CCDC191Q8NCU4 936 aa20.78■□□□□ 0.92
MSH5-SAPCD1-206ENST00000491552 CNKSR1Q969H4 720 aa20.78■□□□□ 0.92
MSH5-SAPCD1-206ENST00000491552 CRY2Q49AN0 593 aa20.77■□□□□ 0.92
MSH5-SAPCD1-206ENST00000491552 MRPL50Q8N5N7 158 aaKnown RBP20.77■□□□□ 0.92
MSH5-SAPCD1-206ENST00000491552 DNAAF4Q8WXU2 420 aa20.77■□□□□ 0.92
MSH5-SAPCD1-206ENST00000491552 CWC25Q9NXE8 425 aaPredicted RBP20.77■□□□□ 0.92
MSH5-SAPCD1-206ENST00000491552 ALDH1L2Q3SY69 923 aa20.76■□□□□ 0.91
MSH5-SAPCD1-206ENST00000491552 SYNE4Q8N205 404 aa20.76■□□□□ 0.91
MSH5-SAPCD1-206ENST00000491552 SSH1Q8WYL5 1049 aa20.76■□□□□ 0.91
MSH5-SAPCD1-206ENST00000491552 FAM89AQ96GI7 184 aa20.76■□□□□ 0.91
MSH5-SAPCD1-206ENST00000491552 NLRP3Q96P20 1036 aa20.76■□□□□ 0.91
MSH5-SAPCD1-206ENST00000491552 DDX60Q8IY21 1712 aaKnown RBP20.75■□□□□ 0.91
MSH5-SAPCD1-206ENST00000491552 CACNA1SQ13698 1873 aa20.75■□□□□ 0.91
MSH5-SAPCD1-206ENST00000491552 LAMB2P55268 1798 aa20.75■□□□□ 0.91
MSH5-SAPCD1-206ENST00000491552 IGKV5-2P06315 115 aa20.75■□□□□ 0.91
MSH5-SAPCD1-206ENST00000491552 HCLS1P14317 486 aaPredicted RBP20.75■□□□□ 0.91
MSH5-SAPCD1-206ENST00000491552 ZBTB38Q8NAP3 1195 aaPredicted RBP20.75■□□□□ 0.91
MSH5-SAPCD1-206ENST00000491552 RPGRQ92834 1020 aaKnown RBP20.75■□□□□ 0.91
MSH5-SAPCD1-206ENST00000491552 CHD4Q14839 1912 aa20.74■□□□□ 0.91
MSH5-SAPCD1-206ENST00000491552 CWF19L2Q2TBE0 894 aaKnown RBP20.74■□□□□ 0.91
MSH5-SAPCD1-206ENST00000491552 PRPF40BQ6NWY9 871 aaKnown RBP20.74■□□□□ 0.91
MSH5-SAPCD1-206ENST00000491552 C3orf67Q6ZVT6 689 aa20.74■□□□□ 0.91
MSH5-SAPCD1-206ENST00000491552 BCL2L13Q9BXK5 485 aa20.74■□□□□ 0.91
MSH5-SAPCD1-206ENST00000491552 SMC4Q9NTJ3 1288 aa20.74■□□□□ 0.91
MSH5-SAPCD1-206ENST00000491552 NEURL1BA8MQ27 555 aa20.73■□□□□ 0.91
MSH5-SAPCD1-206ENST00000491552 F6X3S4 739 aa20.73■□□□□ 0.91
MSH5-SAPCD1-206ENST00000491552 PCCAP05165 728 aaPredicted RBP20.73■□□□□ 0.91
MSH5-SAPCD1-206ENST00000491552 RTL5Q5HYW3 569 aaPredicted RBP20.73■□□□□ 0.91
MSH5-SAPCD1-206ENST00000491552 ARHGAP27Q6ZUM4 889 aa20.73■□□□□ 0.91
MSH5-SAPCD1-206ENST00000491552 SLX4Q8IY92 1834 aa20.72■□□□□ 0.91
MSH5-SAPCD1-206ENST00000491552 ALDH1B1P30837 517 aa20.72■□□□□ 0.91
MSH5-SAPCD1-206ENST00000491552 HOXA10P31260 410 aaPredicted RBP20.72■□□□□ 0.91
MSH5-SAPCD1-206ENST00000491552 LINS1Q8NG48 757 aa20.72■□□□□ 0.91
MSH5-SAPCD1-206ENST00000491552 RBM17Q96I25 401 aaKnown RBP20.72■□□□□ 0.91
MSH5-SAPCD1-206ENST00000491552 PTPRCP08575 1304 aa20.72■□□□□ 0.91
MSH5-SAPCD1-206ENST00000491552 IRS4O14654 1257 aaPredicted RBP20.71■□□□□ 0.91
MSH5-SAPCD1-206ENST00000491552 YY1P25490 414 aa20.71■□□□□ 0.91
MSH5-SAPCD1-206ENST00000491552 ZNF219Q9P2Y4 722 aaPredicted RBP20.71■□□□□ 0.91
MSH5-SAPCD1-206ENST00000491552 GOLGB1Q14789 3259 aaKnown RBP20.7■□□□□ 0.9
MSH5-SAPCD1-206ENST00000491552 C21orf2O43822 256 aa20.7■□□□□ 0.9
MSH5-SAPCD1-206ENST00000491552 HSP90B1P14625 803 aaKnown RBP20.7■□□□□ 0.9
MSH5-SAPCD1-206ENST00000491552 CRAMP1Q96RY5 1269 aa20.7■□□□□ 0.9
MSH5-SAPCD1-206ENST00000491552 RARSP54136 660 aaKnown RBP20.69■□□□□ 0.9
MSH5-SAPCD1-206ENST00000491552 BEND3Q5T5X7 828 aa20.69■□□□□ 0.9
MSH5-SAPCD1-206ENST00000491552 JARID2Q92833 1246 aaPredicted RBP20.69■□□□□ 0.9
MSH5-SAPCD1-206ENST00000491552 CDHR2Q9BYE9 1310 aa20.69■□□□□ 0.9
MSH5-SAPCD1-206ENST00000491552 GCKRQ14397 625 aa20.68■□□□□ 0.9
MSH5-SAPCD1-206ENST00000491552 SOGA3Q5TF21 947 aa20.68■□□□□ 0.9
MSH5-SAPCD1-206ENST00000491552 SLC4A10Q6U841 1118 aa20.68■□□□□ 0.9
MSH5-SAPCD1-206ENST00000491552 BRPF1P55201 1214 aaPredicted RBP20.67■□□□□ 0.9
MSH5-SAPCD1-206ENST00000491552 SF3B3Q15393 1217 aaKnown RBP20.67■□□□□ 0.9
MSH5-SAPCD1-206ENST00000491552 C7orf43Q8WVR3 580 aa20.67■□□□□ 0.9
MSH5-SAPCD1-206ENST00000491552 ABCC4O15439 1325 aa20.67■□□□□ 0.9
MSH5-SAPCD1-206ENST00000491552 UTRNP46939 3433 aa20.66■□□□□ 0.9
MSH5-SAPCD1-206ENST00000491552 H7C1W4 665 aa20.66■□□□□ 0.9
MSH5-SAPCD1-206ENST00000491552 PDE8AO60658 829 aa20.66■□□□□ 0.9
MSH5-SAPCD1-206ENST00000491552 RASSF7Q02833 373 aa20.66■□□□□ 0.9
MSH5-SAPCD1-206ENST00000491552 DDX46Q7L014 1031 aaKnown RBP20.66■□□□□ 0.9
MSH5-SAPCD1-206ENST00000491552 UBE3BQ7Z3V4 1068 aa20.66■□□□□ 0.9
MSH5-SAPCD1-206ENST00000491552 PPEF1O14829 653 aaPredicted RBP20.65■□□□□ 0.9
MSH5-SAPCD1-206ENST00000491552 ALDH1L1O75891 902 aa20.65■□□□□ 0.9
MSH5-SAPCD1-206ENST00000491552 CCDC93Q567U6 631 aa20.65■□□□□ 0.9
MSH5-SAPCD1-206ENST00000491552 SRCIN1Q9C0H9 1055 aa20.65■□□□□ 0.9
MSH5-SAPCD1-206ENST00000491552 FER1L6Q2WGJ9 1857 aa20.64■□□□□ 0.9
MSH5-SAPCD1-206ENST00000491552 KIF16BQ96L93 1317 aa20.64■□□□□ 0.89
MSH5-SAPCD1-206ENST00000491552 NFKBIEO00221 500 aa20.64■□□□□ 0.89
MSH5-SAPCD1-206ENST00000491552 GRAPQ13588 217 aa20.64■□□□□ 0.89
MSH5-SAPCD1-206ENST00000491552 GRAPLQ8TC17 118 aaPredicted RBP20.64■□□□□ 0.89
MSH5-SAPCD1-206ENST00000491552 NOB1Q9ULX3 412 aaKnown RBP20.64■□□□□ 0.89
MSH5-SAPCD1-206ENST00000491552 CASP7P55210 303 aa20.63■□□□□ 0.89
MSH5-SAPCD1-206ENST00000491552 LTBP3Q9NS15 1303 aa20.62■□□□□ 0.89
MSH5-SAPCD1-206ENST00000491552 CTSWP56202 376 aa20.62■□□□□ 0.89
MSH5-SAPCD1-206ENST00000491552 CCDC152Q4G0S7 254 aa20.62■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms