RNA–Protein interactions for RNA: ENST00000398145.6

HPS4-202, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS4, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-202ENST00000398145 ISM2Q6H9L7 571 aa12.81□□□□□ -0.36
HPS4-202ENST00000398145 SRRTQ9BXP5 876 aaKnown RBP12.81□□□□□ -0.36
HPS4-202ENST00000398145 MTMR7Q9Y216 660 aa12.81□□□□□ -0.36
HPS4-202ENST00000398145 CD109Q6YHK3 1445 aa12.81□□□□□ -0.36
HPS4-202ENST00000398145 MCM3P25205 808 aa12.81□□□□□ -0.36
HPS4-202ENST00000398145 EIF4A2Q14240 407 aaKnown RBP12.81□□□□□ -0.36
HPS4-202ENST00000398145 MPRIPQ6WCQ1 1025 aa12.81□□□□□ -0.36
HPS4-202ENST00000398145 CCDC191Q8NCU4 936 aa12.81□□□□□ -0.36
HPS4-202ENST00000398145 TRIM34Q9BYJ4 488 aa12.81□□□□□ -0.36
HPS4-202ENST00000398145 TRAPPC8Q9Y2L5 1435 aa12.81□□□□□ -0.36
HPS4-202ENST00000398145 GADD45BO75293 160 aaPredicted RBP12.81□□□□□ -0.36
HPS4-202ENST00000398145 ANXA1P04083 346 aa12.81□□□□□ -0.36
HPS4-202ENST00000398145 TDO2P48775 406 aa12.81□□□□□ -0.36
HPS4-202ENST00000398145 CCDC102BQ68D86 513 aa12.81□□□□□ -0.36
HPS4-202ENST00000398145 KCNG4Q8TDN1 519 aa12.81□□□□□ -0.36
HPS4-202ENST00000398145 CPLX3Q8WVH0 158 aa12.81□□□□□ -0.36
HPS4-202ENST00000398145 ZNF213O14771 459 aa12.8□□□□□ -0.36
HPS4-202ENST00000398145 KCNH5Q8NCM2 988 aa12.8□□□□□ -0.36
HPS4-202ENST00000398145 TMX1Q9H3N1 280 aa12.8□□□□□ -0.36
HPS4-202ENST00000398145 USP19O94966 1318 aa12.8□□□□□ -0.36
HPS4-202ENST00000398145 PTPRTO14522 1441 aa12.8□□□□□ -0.36
HPS4-202ENST00000398145 PKP1Q13835 747 aa12.8□□□□□ -0.36
HPS4-202ENST00000398145 THEMISQ8N1K5 641 aaPredicted RBP12.8□□□□□ -0.36
HPS4-202ENST00000398145 CCDC12Q8WUD4 166 aaPredicted RBP12.8□□□□□ -0.36
HPS4-202ENST00000398145 CDK5RAP3Q96JB5 506 aa12.8□□□□□ -0.36
HPS4-202ENST00000398145 MSH6P52701 1360 aa12.8□□□□□ -0.36
HPS4-202ENST00000398145 G3V3G9 751 aa12.8□□□□□ -0.36
HPS4-202ENST00000398145 GSPT1P15170 499 aaKnown RBP12.8□□□□□ -0.36
HPS4-202ENST00000398145 DCAF8Q5TAQ9 597 aa12.8□□□□□ -0.36
HPS4-202ENST00000398145 AKAP2Q9Y2D5 859 aa12.8□□□□□ -0.36
HPS4-202ENST00000398145 U2AF2P26368 475 aaKnown RBP eCLIP12.8□□□□□ -0.361e-6■■□□□ 13.6
HPS4-202ENST00000398145 AIDAQ96BJ3 306 aa12.8□□□□□ -0.36
HPS4-202ENST00000398145 ZSWIM4Q9H7M6 989 aa12.8□□□□□ -0.36
HPS4-202ENST00000398145 ABCC2Q92887 1545 aa12.79□□□□□ -0.36
HPS4-202ENST00000398145 GOLIM4O00461 696 aa12.79□□□□□ -0.36
HPS4-202ENST00000398145 RAD21O60216 631 aa12.79□□□□□ -0.36
HPS4-202ENST00000398145 CREB3L3Q68CJ9 461 aa12.79□□□□□ -0.36
HPS4-202ENST00000398145 RUFY3Q7L099 469 aa12.79□□□□□ -0.36
HPS4-202ENST00000398145 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.79□□□□□ -0.36
HPS4-202ENST00000398145 LRRC2Q9BYS8 371 aa12.79□□□□□ -0.36
HPS4-202ENST00000398145 CCDC196A0A1B0GTZ2 297 aa12.79□□□□□ -0.36
HPS4-202ENST00000398145 CPA1P15085 419 aa12.79□□□□□ -0.36
HPS4-202ENST00000398145 SYKP43405 635 aa12.79□□□□□ -0.36
HPS4-202ENST00000398145 ACEP12821 1306 aa12.79□□□□□ -0.36
HPS4-202ENST00000398145 IBTKQ9P2D0 1353 aaPredicted RBP12.79□□□□□ -0.36
HPS4-202ENST00000398145 SHTN1A0MZ66 631 aa12.79□□□□□ -0.36
HPS4-202ENST00000398145 A0A087WZG4 1122 aa12.78□□□□□ -0.36
HPS4-202ENST00000398145 BBXQ8WY36 941 aaPredicted RBP12.78□□□□□ -0.36
HPS4-202ENST00000398145 KIF21AQ7Z4S6 1674 aa12.78□□□□□ -0.36
HPS4-202ENST00000398145 ATF3P18847 181 aa12.78□□□□□ -0.36
HPS4-202ENST00000398145 SMARCC1Q92922 1105 aaPredicted RBP12.78□□□□□ -0.36
HPS4-202ENST00000398145 ERO1AQ96HE7 468 aa12.78□□□□□ -0.36
HPS4-202ENST00000398145 CENPHQ9H3R5 247 aa12.78□□□□□ -0.36
HPS4-202ENST00000398145 ZRANB1Q9UGI0 708 aa12.78□□□□□ -0.36
HPS4-202ENST00000398145 LMOD1P29536 600 aaPredicted RBP12.78□□□□□ -0.36
HPS4-202ENST00000398145 Q6ZUG5 572 aa12.78□□□□□ -0.36
HPS4-202ENST00000398145 GPT2Q8TD30 523 aa12.78□□□□□ -0.36
HPS4-202ENST00000398145 CCDC85AQ96PX6 553 aaPredicted RBP12.78□□□□□ -0.36
HPS4-202ENST00000398145 FAM107BQ9H098 131 aa12.78□□□□□ -0.36
HPS4-202ENST00000398145 CHPF2Q9P2E5 772 aa12.78□□□□□ -0.36
HPS4-202ENST00000398145 ALDH1L1O75891 902 aa12.77□□□□□ -0.36
HPS4-202ENST00000398145 NMIQ13287 307 aaPredicted RBP12.77□□□□□ -0.36
HPS4-202ENST00000398145 TSC1Q92574 1164 aa12.77□□□□□ -0.36
HPS4-202ENST00000398145 DDX46Q7L014 1031 aaKnown RBP12.77□□□□□ -0.37
HPS4-202ENST00000398145 BCL2L12Q9HB09 334 aa12.77□□□□□ -0.37
HPS4-202ENST00000398145 ADAMTS12P58397 1594 aa12.77□□□□□ -0.37
HPS4-202ENST00000398145 SGSM2O43147 1006 aa12.77□□□□□ -0.37
HPS4-202ENST00000398145 ERLIN2O94905 339 aa12.77□□□□□ -0.37
HPS4-202ENST00000398145 CD2BP2O95400 341 aaKnown RBP12.77□□□□□ -0.37
HPS4-202ENST00000398145 IARSP41252 1262 aaKnown RBP12.77□□□□□ -0.37
HPS4-202ENST00000398145 MTHFSDQ2M296 383 aaKnown RBP12.77□□□□□ -0.37
HPS4-202ENST00000398145 SYT10Q6XYQ8 523 aa12.77□□□□□ -0.37
HPS4-202ENST00000398145 RAI14Q9P0K7 980 aa12.77□□□□□ -0.37
HPS4-202ENST00000398145 G2E3Q7L622 706 aa12.76□□□□□ -0.37
HPS4-202ENST00000398145 CCDC82Q8N4S0 544 aa12.76□□□□□ -0.37
HPS4-202ENST00000398145 MPHOSPH8Q99549 860 aa12.76□□□□□ -0.37
HPS4-202ENST00000398145 NUP88Q99567 741 aaPredicted RBP12.76□□□□□ -0.37
HPS4-202ENST00000398145 TANGO6Q9C0B7 1094 aa12.76□□□□□ -0.37
HPS4-202ENST00000398145 GNL3LQ9NVN8 582 aaKnown RBP12.76□□□□□ -0.37
HPS4-202ENST00000398145 SNX14Q9Y5W7 946 aa12.76□□□□□ -0.37
HPS4-202ENST00000398145 DISP1Q96F81 1524 aa12.76□□□□□ -0.37
HPS4-202ENST00000398145 ABCC4O15439 1325 aa12.76□□□□□ -0.37
HPS4-202ENST00000398145 GABPB1Q06547 395 aaPredicted RBP12.76□□□□□ -0.37
HPS4-202ENST00000398145 SPA17Q15506 151 aa12.76□□□□□ -0.37
HPS4-202ENST00000398145 METTL24Q5JXM2 366 aa12.76□□□□□ -0.37
HPS4-202ENST00000398145 RAD50Q92878 1312 aa12.76□□□□□ -0.37
HPS4-202ENST00000398145 MCM6Q14566 821 aa12.76□□□□□ -0.37
HPS4-202ENST00000398145 ODF2Q5BJF6 829 aa12.76□□□□□ -0.37
HPS4-202ENST00000398145 NAPBQ9H115 298 aa12.76□□□□□ -0.37
HPS4-202ENST00000398145 SLC12A7Q9Y666 1083 aa12.76□□□□□ -0.37
HPS4-202ENST00000398145 CHL1O00533 1208 aa12.76□□□□□ -0.37
HPS4-202ENST00000398145 HAND2P61296 217 aa12.76□□□□□ -0.37
HPS4-202ENST00000398145 MCMDC2Q4G0Z9 681 aa12.76□□□□□ -0.37
HPS4-202ENST00000398145 CT47A1Q5JQC4 288 aaPredicted RBP12.76□□□□□ -0.37
HPS4-202ENST00000398145 FAM173BQ6P4H8 233 aa12.76□□□□□ -0.37
HPS4-202ENST00000398145 UBE3BQ7Z3V4 1068 aa12.76□□□□□ -0.37
HPS4-202ENST00000398145 GOLGA8AA7E2F4 631 aa12.75□□□□□ -0.37
HPS4-202ENST00000398145 GRM8O00222 908 aa12.75□□□□□ -0.37
HPS4-202ENST00000398145 YEATS4O95619 227 aa12.75□□□□□ -0.37
HPS4-202ENST00000398145 HSP90AB3PQ58FF7 597 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms