RNA–Protein interactions for RNA: ENST00000355497.9

LMX1B-201, Transcript of LIM homeobox transcription factor 1 beta, humanhuman

TSL 1 (best) BASIC

Gene LMX1B, Length 5,809 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1B-201ENST00000355497 KAT14Q9H8E8 782 aa17.06■□□□□ 0.32
LMX1B-201ENST00000355497 TRMT112Q9UI30 125 aaKnown RBP17.06■□□□□ 0.32
LMX1B-201ENST00000355497 ATP2C2O75185 946 aa17.06■□□□□ 0.32
LMX1B-201ENST00000355497 WDR78Q5VTH9 848 aa17.06■□□□□ 0.32
LMX1B-201ENST00000355497 CCDC144CPQ8IYA2 1237 aa17.06■□□□□ 0.32
LMX1B-201ENST00000355497 TRIM47Q96LD4 638 aa17.06■□□□□ 0.32
LMX1B-201ENST00000355497 LARP6Q9BRS8 491 aaKnown RBP17.06■□□□□ 0.32
LMX1B-201ENST00000355497 UBA7P41226 1012 aa17.05■□□□□ 0.32
LMX1B-201ENST00000355497 ANKLE2Q86XL3 938 aa17.05■□□□□ 0.32
LMX1B-201ENST00000355497 ZSWIM4Q9H7M6 989 aa17.05■□□□□ 0.32
LMX1B-201ENST00000355497 EHBP1L1Q8N3D4 1523 aa17.05■□□□□ 0.32
LMX1B-201ENST00000355497 METAP2P50579 478 aaKnown RBP eCLIP17.05■□□□□ 0.32
LMX1B-201ENST00000355497 MNAT1P51948 309 aa17.05■□□□□ 0.32
LMX1B-201ENST00000355497 NUDT16Q96DE0 195 aaKnown RBP17.05■□□□□ 0.32
LMX1B-201ENST00000355497 PLVAPQ9BX97 442 aa17.05■□□□□ 0.32
LMX1B-201ENST00000355497 PANK2Q9BZ23 570 aa17.05■□□□□ 0.32
LMX1B-201ENST00000355497 AMOTQ4VCS5 1084 aa17.05■□□□□ 0.32
LMX1B-201ENST00000355497 ISM2Q6H9L7 571 aa17.05■□□□□ 0.32
LMX1B-201ENST00000355497 CCDC174Q6PII3 467 aa17.04■□□□□ 0.32
LMX1B-201ENST00000355497 HYPKQ9NX55 129 aa17.04■□□□□ 0.32
LMX1B-201ENST00000355497 RASAL2Q9UJF2 1139 aa17.04■□□□□ 0.32
LMX1B-201ENST00000355497 N4BP3O15049 544 aa17.04■□□□□ 0.32
LMX1B-201ENST00000355497 TBCAO75347 108 aaKnown RBP17.04■□□□□ 0.32
LMX1B-201ENST00000355497 MXRA7P84157 204 aa17.04■□□□□ 0.32
LMX1B-201ENST00000355497 RPGRQ92834 1020 aaKnown RBP17.04■□□□□ 0.32
LMX1B-201ENST00000355497 CCDC6Q16204 474 aa17.04■□□□□ 0.32
LMX1B-201ENST00000355497 IQCGQ9H095 443 aaKnown RBP17.04■□□□□ 0.32
LMX1B-201ENST00000355497 PDE4BQ07343 736 aa17.04■□□□□ 0.32
LMX1B-201ENST00000355497 DAAM2Q86T65 1068 aa17.04■□□□□ 0.32
LMX1B-201ENST00000355497 CTAGE1Q96RT6 745 aa17.04■□□□□ 0.32
LMX1B-201ENST00000355497 ORC3Q9UBD5 711 aaPredicted RBP17.04■□□□□ 0.32
LMX1B-201ENST00000355497 AKR1B10O60218 316 aa17.03■□□□□ 0.32
LMX1B-201ENST00000355497 RBM27Q9P2N5 1060 aaKnown RBP17.03■□□□□ 0.32
LMX1B-201ENST00000355497 LRRC45Q96CN5 670 aa17.03■□□□□ 0.32
LMX1B-201ENST00000355497 BICD1Q96G01 975 aa17.03■□□□□ 0.32
LMX1B-201ENST00000355497 KIF4AO95239 1232 aa17.03■□□□□ 0.32
LMX1B-201ENST00000355497 SLC26A6Q9BXS9 759 aa17.03■□□□□ 0.32
LMX1B-201ENST00000355497 PTPRCP08575 1304 aa17.03■□□□□ 0.32
LMX1B-201ENST00000355497 CTAGE15A4D2H0 777 aa17.03■□□□□ 0.32
LMX1B-201ENST00000355497 F6X3S4 739 aa17.03■□□□□ 0.32
LMX1B-201ENST00000355497 CTAGE8P0CG41 777 aa17.03■□□□□ 0.32
LMX1B-201ENST00000355497 CYLC1P35663 651 aaPredicted RBP17.03■□□□□ 0.32
LMX1B-201ENST00000355497 CTAGE6Q86UF2 777 aa17.03■□□□□ 0.32
LMX1B-201ENST00000355497 CTAGE4Q8IX94 777 aa17.03■□□□□ 0.32
LMX1B-201ENST00000355497 KRT222Q8N1A0 295 aa17.03■□□□□ 0.32
LMX1B-201ENST00000355497 TIGD1Q96MW7 591 aa17.03■□□□□ 0.32
LMX1B-201ENST00000355497 MMRN2Q9H8L6 949 aa17.03■□□□□ 0.32
LMX1B-201ENST00000355497 HMG20BQ9P0W2 317 aa17.03■□□□□ 0.32
LMX1B-201ENST00000355497 NCOA7Q8NI08 942 aa17.02■□□□□ 0.32
LMX1B-201ENST00000355497 ZFP91Q96JP5 570 aaPredicted RBP17.02■□□□□ 0.32
LMX1B-201ENST00000355497 NEK1Q96PY6 1258 aa17.02■□□□□ 0.32
LMX1B-201ENST00000355497 SAMM50Q9Y512 469 aa17.02■□□□□ 0.32
LMX1B-201ENST00000355497 IVLP07476 585 aa17.02■□□□□ 0.32
LMX1B-201ENST00000355497 TTLL12Q14166 644 aaPredicted RBP17.02■□□□□ 0.32
LMX1B-201ENST00000355497 CCDC184Q52MB2 194 aa17.02■□□□□ 0.32
LMX1B-201ENST00000355497 MFSD6Q6ZSS7 791 aa17.02■□□□□ 0.32
LMX1B-201ENST00000355497 ZSCAN16Q9H4T2 348 aaPredicted RBP17.02■□□□□ 0.32
LMX1B-201ENST00000355497 VAT1LQ9HCJ6 419 aa17.02■□□□□ 0.32
LMX1B-201ENST00000355497 RRAGBQ5VZM2 374 aa17.02■□□□□ 0.32
LMX1B-201ENST00000355497 SELENOOQ9BVL4 669 aa17.02■□□□□ 0.32
LMX1B-201ENST00000355497 ECHDC1Q9NTX5 307 aa17.02■□□□□ 0.32
LMX1B-201ENST00000355497 ZSCAN23Q3MJ62 389 aa17.02■□□□□ 0.31
LMX1B-201ENST00000355497 MSL1Q68DK7 614 aa17.02■□□□□ 0.31
LMX1B-201ENST00000355497 PAIP2Q9BPZ3 127 aaKnown RBP17.02■□□□□ 0.31
LMX1B-201ENST00000355497 TTC12Q9H892 705 aaPredicted RBP17.02■□□□□ 0.31
LMX1B-201ENST00000355497 ZHX1Q9UKY1 873 aaPredicted RBP17.02■□□□□ 0.31
LMX1B-201ENST00000355497 TSPY2A6NKD2 308 aa17.01■□□□□ 0.31
LMX1B-201ENST00000355497 UBASH3AP57075 661 aa17.01■□□□□ 0.31
LMX1B-201ENST00000355497 STMN4Q9H169 189 aaPredicted RBP17.01■□□□□ 0.31
LMX1B-201ENST00000355497 MICU3Q86XE3 530 aa17.01■□□□□ 0.31
LMX1B-201ENST00000355497 TBC1D9Q6ZT07 1266 aa17.01■□□□□ 0.31
LMX1B-201ENST00000355497 RAB3IL1Q8TBN0 382 aa17.01■□□□□ 0.31
LMX1B-201ENST00000355497 SYNCQ9H7C4 482 aa17.01■□□□□ 0.31
LMX1B-201ENST00000355497 OPA1O60313 960 aa17.01■□□□□ 0.31
LMX1B-201ENST00000355497 MYCNP04198 464 aaPredicted RBP17.01■□□□□ 0.31
LMX1B-201ENST00000355497 SYKP43405 635 aa17■□□□□ 0.31
LMX1B-201ENST00000355497 TRMT1LQ7Z2T5 733 aaKnown RBP17■□□□□ 0.31
LMX1B-201ENST00000355497 ERMNQ8TAM6 284 aa17■□□□□ 0.31
LMX1B-201ENST00000355497 DHX29Q7Z478 1369 aaKnown RBP17■□□□□ 0.31
LMX1B-201ENST00000355497 LDHCP07864 332 aa17■□□□□ 0.31
LMX1B-201ENST00000355497 C20orf194Q5TEA3 1177 aa17■□□□□ 0.31
LMX1B-201ENST00000355497 CCDC77Q9BR77 488 aa17■□□□□ 0.31
LMX1B-201ENST00000355497 PRPHP41219 470 aa17■□□□□ 0.31
LMX1B-201ENST00000355497 LRSAM1Q6UWE0 723 aa17■□□□□ 0.31
LMX1B-201ENST00000355497 CABP5Q9NP86 173 aa17■□□□□ 0.31
LMX1B-201ENST00000355497 KLHL40Q2TBA0 621 aa16.99■□□□□ 0.31
LMX1B-201ENST00000355497 DAPK1P53355 1430 aa16.99■□□□□ 0.31
LMX1B-201ENST00000355497 DBF4Q9UBU7 674 aaPredicted RBP16.99■□□□□ 0.31
LMX1B-201ENST00000355497 BAG3O95817 575 aa16.99■□□□□ 0.31
LMX1B-201ENST00000355497 USP37Q86T82 979 aa16.99■□□□□ 0.31
LMX1B-201ENST00000355497 SPAG5Q96R06 1193 aa16.99■□□□□ 0.31
LMX1B-201ENST00000355497 ARFGAP3Q9NP61 516 aa16.99■□□□□ 0.31
LMX1B-201ENST00000355497 RSPH14Q9UHP6 348 aa16.99■□□□□ 0.31
LMX1B-201ENST00000355497 CCDC61Q9Y6R9 512 aa16.99■□□□□ 0.31
LMX1B-201ENST00000355497 ZWINTO95229 277 aa16.99■□□□□ 0.31
LMX1B-201ENST00000355497 USHBP1Q8N6Y0 703 aa16.99■□□□□ 0.31
LMX1B-201ENST00000355497 AQRO60306 1485 aaKnown RBP eCLIP16.98■□□□□ 0.31
LMX1B-201ENST00000355497 MRPS9P82933 396 aaKnown RBP16.98■□□□□ 0.31
LMX1B-201ENST00000355497 HLA-DOAP06340 250 aa16.98■□□□□ 0.31
LMX1B-201ENST00000355497 STAT6P42226 847 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms