RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 MICU3Q86XE3 530 aa15.63■□□□□ 0.09
SF3A1-201ENST00000215793 FBXO31Q5XUX0 539 aaPredicted RBP15.62■□□□□ 0.09
SF3A1-201ENST00000215793 PLB1Q6P1J6 1458 aa15.62■□□□□ 0.09
SF3A1-201ENST00000215793 NBPF7P0C2Y1 421 aaPredicted RBP15.62■□□□□ 0.09
SF3A1-201ENST00000215793 TMC6Q7Z403 805 aa15.62■□□□□ 0.09
SF3A1-201ENST00000215793 TAOK3Q9H2K8 898 aa15.62■□□□□ 0.09
SF3A1-201ENST00000215793 KAT14Q9H8E8 782 aa15.62■□□□□ 0.09
SF3A1-201ENST00000215793 ERICH4A6NGS2 130 aa15.62■□□□□ 0.09
SF3A1-201ENST00000215793 C16orf45Q96MC5 204 aaPredicted RBP15.62■□□□□ 0.09
SF3A1-201ENST00000215793 CCDC113Q9H0I3 377 aa15.62■□□□□ 0.09
SF3A1-201ENST00000215793 SNRKQ9NRH2 765 aa15.62■□□□□ 0.09
SF3A1-201ENST00000215793 BIN1O00499 593 aa15.62■□□□□ 0.09
SF3A1-201ENST00000215793 ADCY5O95622 1261 aa15.62■□□□□ 0.09
SF3A1-201ENST00000215793 BMP15O95972 392 aa15.62■□□□□ 0.09
SF3A1-201ENST00000215793 CCDC40Q4G0X9 1142 aa15.62■□□□□ 0.09
SF3A1-201ENST00000215793 KRT28Q7Z3Y7 464 aa15.62■□□□□ 0.09
SF3A1-201ENST00000215793 TRMT1Q9NXH9 659 aaKnown RBP15.62■□□□□ 0.09
SF3A1-201ENST00000215793 ANKRD13DQ6ZTN6 518 aa15.61■□□□□ 0.09
SF3A1-201ENST00000215793 HOOK3Q86VS8 718 aa15.61■□□□□ 0.09
SF3A1-201ENST00000215793 NUCB1Q02818 461 aa15.61■□□□□ 0.09
SF3A1-201ENST00000215793 TTC21AQ8NDW8 1320 aa15.61■□□□□ 0.09
SF3A1-201ENST00000215793 ATP5J2-PTCD1G3V325 749 aa15.61■□□□□ 0.09
SF3A1-201ENST00000215793 C6orf229H3BNL8 230 aa15.61■□□□□ 0.09
SF3A1-201ENST00000215793 GCOM1H8Y6P7 765 aaPredicted RBP15.61■□□□□ 0.09
SF3A1-201ENST00000215793 MYZAPP0CAP1 466 aa15.61■□□□□ 0.09
SF3A1-201ENST00000215793 DDX46Q7L014 1031 aaKnown RBP15.61■□□□□ 0.09
SF3A1-201ENST00000215793 LARP6Q9BRS8 491 aaKnown RBP15.61■□□□□ 0.09
SF3A1-201ENST00000215793 SMC1AQ14683 1233 aaKnown RBP15.6■□□□□ 0.09
SF3A1-201ENST00000215793 TMTC2Q8N394 836 aa15.6■□□□□ 0.09
SF3A1-201ENST00000215793 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.6■□□□□ 0.09
SF3A1-201ENST00000215793 RALGAPBQ86X10 1494 aa15.6■□□□□ 0.09
SF3A1-201ENST00000215793 SPECC1Q5M775 1068 aa15.6■□□□□ 0.09
SF3A1-201ENST00000215793 IGHDP01880 384 aa15.6■□□□□ 0.09
SF3A1-201ENST00000215793 RBM25P49756 843 aaKnown RBP15.6■□□□□ 0.09
SF3A1-201ENST00000215793 HAND2P61296 217 aa15.6■□□□□ 0.09
SF3A1-201ENST00000215793 ACEP12821 1306 aa15.59■□□□□ 0.09
SF3A1-201ENST00000215793 TCERG1LQ5VWI1 586 aa15.59■□□□□ 0.09
SF3A1-201ENST00000215793 TMX3Q96JJ7 454 aa15.59■□□□□ 0.09
SF3A1-201ENST00000215793 FAM83GA6ND36 823 aa15.59■□□□□ 0.09
SF3A1-201ENST00000215793 ZSCAN22P10073 491 aaPredicted RBP15.59■□□□□ 0.09
SF3A1-201ENST00000215793 SLC26A6Q9BXS9 759 aa15.59■□□□□ 0.09
SF3A1-201ENST00000215793 HLA-DOAP06340 250 aa15.59■□□□□ 0.09
SF3A1-201ENST00000215793 EHBP1Q8NDI1 1231 aa15.59■□□□□ 0.09
SF3A1-201ENST00000215793 BRF1Q92994 677 aa15.59■□□□□ 0.09
SF3A1-201ENST00000215793 CABP5Q9NP86 173 aa15.59■□□□□ 0.09
SF3A1-201ENST00000215793 CC2D2AQ9P2K1 1620 aa15.59■□□□□ 0.09
SF3A1-201ENST00000215793 SNW1Q13573 536 aaKnown RBP15.59■□□□□ 0.09
SF3A1-201ENST00000215793 RMND1Q9NWS8 449 aa15.59■□□□□ 0.09
SF3A1-201ENST00000215793 ALDH1L1O75891 902 aa15.58■□□□□ 0.09
SF3A1-201ENST00000215793 ADAMTS2O95450 1211 aa15.58■□□□□ 0.09
SF3A1-201ENST00000215793 CRNKL1Q9BZJ0 848 aaKnown RBP15.58■□□□□ 0.09
SF3A1-201ENST00000215793 ANKRD24Q8TF21 1146 aa15.58■□□□□ 0.08
SF3A1-201ENST00000215793 KRT23Q9C075 422 aa15.58■□□□□ 0.08
SF3A1-201ENST00000215793 SDSP20132 328 aa15.58■□□□□ 0.08
SF3A1-201ENST00000215793 KCNG4Q8TDN1 519 aa15.58■□□□□ 0.08
SF3A1-201ENST00000215793 CTNNBL1Q8WYA6 563 aaPredicted RBP15.58■□□□□ 0.08
SF3A1-201ENST00000215793 MACROD2A1Z1Q3 448 aa15.58■□□□□ 0.08
SF3A1-201ENST00000215793 DNA2P51530 1060 aa15.58■□□□□ 0.08
SF3A1-201ENST00000215793 PANK2Q9BZ23 570 aa15.58■□□□□ 0.08
SF3A1-201ENST00000215793 FAM107BQ9H098 131 aa15.58■□□□□ 0.08
SF3A1-201ENST00000215793 DISP3Q9P2K9 1392 aa15.57■□□□□ 0.08
SF3A1-201ENST00000215793 TRAF1Q13077 416 aa15.57■□□□□ 0.08
SF3A1-201ENST00000215793 HLTFQ14527 1009 aaKnown RBP eCLIP15.57■□□□□ 0.08
SF3A1-201ENST00000215793 MICALCLQ6ZW33 695 aa15.57■□□□□ 0.08
SF3A1-201ENST00000215793 ANKRD44Q8N8A2 993 aa15.57■□□□□ 0.08
SF3A1-201ENST00000215793 SYKP43405 635 aa15.57■□□□□ 0.08
SF3A1-201ENST00000215793 WTAPQ15007 396 aa15.57■□□□□ 0.08
SF3A1-201ENST00000215793 CADPS2Q86UW7 1296 aa15.57■□□□□ 0.08
SF3A1-201ENST00000215793 SMARCC1Q92922 1105 aaPredicted RBP15.57■□□□□ 0.08
SF3A1-201ENST00000215793 FEZ1Q99689 392 aa15.57■□□□□ 0.08
SF3A1-201ENST00000215793 KLF18A0A0U1RQI7 1052 aa15.57■□□□□ 0.08
SF3A1-201ENST00000215793 TMCO5BA8MYB1 307 aa15.57■□□□□ 0.08
SF3A1-201ENST00000215793 PDE1AP54750 535 aa15.57■□□□□ 0.08
SF3A1-201ENST00000215793 CCDC144CPQ8IYA2 1237 aa15.57■□□□□ 0.08
SF3A1-201ENST00000215793 CNNM2Q9H8M5 875 aa15.57■□□□□ 0.08
SF3A1-201ENST00000215793 GOPCQ9HD26 462 aa15.57■□□□□ 0.08
SF3A1-201ENST00000215793 N4BP3O15049 544 aa15.57■□□□□ 0.08
SF3A1-201ENST00000215793 GSTO1P78417 241 aa15.57■□□□□ 0.08
SF3A1-201ENST00000215793 SPAG1Q07617 926 aa15.57■□□□□ 0.08
SF3A1-201ENST00000215793 GOLGA6L10A0A0M3HER8 536 aa15.56■□□□□ 0.08
SF3A1-201ENST00000215793 CTNNA2P26232 953 aa15.56■□□□□ 0.08
SF3A1-201ENST00000215793 CCDC152Q4G0S7 254 aa15.56■□□□□ 0.08
SF3A1-201ENST00000215793 NGLY1Q96IV0 654 aa15.56■□□□□ 0.08
SF3A1-201ENST00000215793 PAXBP1Q9Y5B6 917 aa15.56■□□□□ 0.08
SF3A1-201ENST00000215793 ZBTB43O43298 467 aa15.56■□□□□ 0.08
SF3A1-201ENST00000215793 MEIS3Q99687 375 aa15.56■□□□□ 0.08
SF3A1-201ENST00000215793 TSHZ3Q63HK5 1081 aa15.56■□□□□ 0.08
SF3A1-201ENST00000215793 CUL7Q14999 1698 aa15.56■□□□□ 0.08
SF3A1-201ENST00000215793 LRSAM1Q6UWE0 723 aa15.56■□□□□ 0.08
SF3A1-201ENST00000215793 ESR2Q92731 530 aa15.56■□□□□ 0.08
SF3A1-201ENST00000215793 PRIMPOLQ96LW4 560 aa15.56■□□□□ 0.08
SF3A1-201ENST00000215793 CCDC172P0C7W6 258 aa15.55■□□□□ 0.08
SF3A1-201ENST00000215793 IFI16Q16666 785 aaKnown RBP15.55■□□□□ 0.08
SF3A1-201ENST00000215793 PPP4R3BQ5MIZ7 849 aa15.55■□□□□ 0.08
SF3A1-201ENST00000215793 VAT1LQ9HCJ6 419 aa15.55■□□□□ 0.08
SF3A1-201ENST00000215793 DENND4BO75064 1496 aaPredicted RBP15.55■□□□□ 0.08
SF3A1-201ENST00000215793 HCLS1P14317 486 aaPredicted RBP15.55■□□□□ 0.08
SF3A1-201ENST00000215793 GNAQP50148 359 aa15.55■□□□□ 0.08
SF3A1-201ENST00000215793 CTAGE1Q96RT6 745 aa15.55■□□□□ 0.08
SF3A1-201ENST00000215793 CBX1P83916 185 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms