RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 CENPQQ7L2Z9 268 aaPredicted RBP2.39□□□□□ -2.03
SCFD1-219ENST00000556413 CROCCP3Q8IVE0 287 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 NAXDQ8IW45 347 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 CMTM8Q8IZV2 173 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 PRSS35Q8N3Z0 413 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 IQUBQ8NA54 791 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 TMEM161BQ8NDZ6 487 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 OR1B1Q8NGR6 318 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 KIF18AQ8NI77 898 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 ZNF461Q8TAF7 563 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 MYLPFQ96A32 169 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 PPP1R16AQ96I34 528 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 C8orf76Q96K31 380 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 P2RY13Q9BPV8 354 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 DPEP3Q9H4B8 488 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 ECT2Q9H8V3 914 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 TUFT1Q9NNX1 390 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 TMEM9BQ9NQ34 198 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 ZNF275Q9NSD4 429 aaPredicted RBP2.39□□□□□ -2.03
SCFD1-219ENST00000556413 THYN1Q9P016 225 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 NFKBIL1Q9UBC1 381 aaPredicted RBP2.39□□□□□ -2.03
SCFD1-219ENST00000556413 SLC12A6Q9UHW9 1150 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 CLEC4EQ9ULY5 219 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 ZFP37Q9Y6Q3 630 aaPredicted RBP2.39□□□□□ -2.03
SCFD1-219ENST00000556413 BPTFQ12830 3046 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 SDK1Q7Z5N4 2213 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 TPRP12270 2363 aaKnown RBP2.39□□□□□ -2.03
SCFD1-219ENST00000556413 CHD8Q9HCK8 2581 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 PTPRJQ12913 1337 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 AKAP13Q12802 2813 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 TRBV5-4A0A0C4DH59 114 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 TMEM150CB9EJG8 249 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 WASH3PC4AMC7 463 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 LMO7DNF2Z398 122 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 K7EQS6 105 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 TRDMT1O14717 391 aaKnown RBP2.38□□□□□ -2.03
SCFD1-219ENST00000556413 CLDN3O15551 220 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 FLRT2O43155 660 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 TRAPPC3O43617 180 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 FAM189A1O60320 539 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 REC8O95072 547 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 APBB3O95704 486 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 PIGRP01833 764 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 GBAP04062 536 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 MCF2P10911 925 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 ODC1P11926 461 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 HLA-EP13747 358 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 PDGFRAP16234 1089 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 GOT1P17174 413 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 ADRA2CP18825 462 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 GJB2P29033 226 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 CASP1P29466 404 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 FEN1P39748 380 aaKnown RBP2.38□□□□□ -2.03
SCFD1-219ENST00000556413 MAGEA9P43362 315 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 ZNF41P51814 821 aaPredicted RBP2.38□□□□□ -2.03
SCFD1-219ENST00000556413 IST1P53990 364 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 EVCP57679 992 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 KARSQ15046 597 aaKnown RBP2.38□□□□□ -2.03
SCFD1-219ENST00000556413 LRRC37A5PQ49AS3 106 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 VWA2Q5GFL6 755 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 XKR4Q5GH76 650 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 TEX35Q5T0J7 233 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 TPGS2Q68CL5 300 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 ZNF770Q6IQ21 691 aaPredicted RBP2.38□□□□□ -2.03
SCFD1-219ENST00000556413 CGB2Q6NT52 195 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 ARMCX5Q6P1M9 558 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 FAM173BQ6P4H8 233 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 C11orf57Q6ZUT1 292 aaPredicted RBP2.38□□□□□ -2.03
SCFD1-219ENST00000556413 Q6ZVQ6 151 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 C1orf186Q6ZWK4 172 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 CCDC186Q7Z3E2 898 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 TRMT11Q7Z4G4 463 aaKnown RBP2.38□□□□□ -2.03
SCFD1-219ENST00000556413 GPR141Q7Z602 305 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 ADCK2Q7Z695 626 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 RALGPS2Q86X27 583 aaPredicted RBP2.38□□□□□ -2.03
SCFD1-219ENST00000556413 PDCL2Q8N4E4 241 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 BANPQ8N9N5 519 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 OR5B17Q8NGF7 314 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 ERMNQ8TAM6 284 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 KIFAP3Q92845 792 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 PSMG2Q969U7 264 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 ZNF274Q96GC6 653 aaPredicted RBP2.38□□□□□ -2.03
SCFD1-219ENST00000556413 CNDP2Q96KP4 475 aaKnown RBP2.38□□□□□ -2.03
SCFD1-219ENST00000556413 MRPL45Q9BRJ2 306 aaKnown RBP2.38□□□□□ -2.03
SCFD1-219ENST00000556413 CBWD1Q9BRT8 395 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 FAM213AQ9BRX8 229 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 NFKBIZQ9BYH8 718 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 TRIM4Q9C037 500 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 C8orf33Q9H7E9 229 aaPredicted RBP2.38□□□□□ -2.03
SCFD1-219ENST00000556413 C10orf88Q9H8K7 445 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 RPF1Q9H9Y2 349 aaKnown RBP2.38□□□□□ -2.03
SCFD1-219ENST00000556413 KCNK13Q9HB14 408 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 VNN3Q9NY84 501 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 ARMCX1Q9P291 453 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 HMGXB4Q9UGU5 601 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 RSPH14Q9UHP6 348 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 UBQLN1Q9UMX0 589 aaKnown RBP2.38□□□□□ -2.03
SCFD1-219ENST00000556413 SNX7Q9UNH6 387 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 SATB2Q9UPW6 733 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 RUVBL2Q9Y230 463 aaKnown RBP2.38□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 100.3 ms