RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 KLF8O95600 359 aaPredicted RBP2.4□□□□□ -2.03
SCFD1-219ENST00000556413 MT-ND2P03891 347 aa2.4□□□□□ -2.03
SCFD1-219ENST00000556413 PROS1P07225 676 aa2.4□□□□□ -2.03
SCFD1-219ENST00000556413 CCDC175P0C221 793 aa2.4□□□□□ -2.03
SCFD1-219ENST00000556413 SPP1P10451 314 aa2.4□□□□□ -2.03
SCFD1-219ENST00000556413 DLATP10515 647 aaKnown RBP2.4□□□□□ -2.03
SCFD1-219ENST00000556413 GCFC2P16383 781 aaKnown RBP2.4□□□□□ -2.03
SCFD1-219ENST00000556413 FASP25445 335 aa2.4□□□□□ -2.03
SCFD1-219ENST00000556413 PSMA5P28066 241 aa2.4□□□□□ -2.03
SCFD1-219ENST00000556413 EEF1DP29692 281 aaKnown RBP2.4□□□□□ -2.03
SCFD1-219ENST00000556413 MARCKSP29966 332 aaPredicted RBP2.4□□□□□ -2.03
SCFD1-219ENST00000556413 AXLP30530 894 aa2.4□□□□□ -2.03
SCFD1-219ENST00000556413 SSTR1P30872 391 aa2.4□□□□□ -2.03
SCFD1-219ENST00000556413 NAMPTP43490 491 aa2.4□□□□□ -2.03
SCFD1-219ENST00000556413 RPS9P46781 194 aaKnown RBP2.4□□□□□ -2.03
SCFD1-219ENST00000556413 CDX1P47902 265 aaPredicted RBP2.4□□□□□ -2.03
SCFD1-219ENST00000556413 ACOT2P49753 483 aa2.4□□□□□ -2.03
SCFD1-219ENST00000556413 IL9RQ01113 521 aa2.4□□□□□ -2.03
SCFD1-219ENST00000556413 YWHAHQ04917 246 aaPredicted RBP2.4□□□□□ -2.03
SCFD1-219ENST00000556413 NCBP1Q09161 790 aaKnown RBP2.4□□□□□ -2.03
SCFD1-219ENST00000556413 BFSP1Q12934 665 aa2.4□□□□□ -2.03
SCFD1-219ENST00000556413 DMC1Q14565 340 aa2.4□□□□□ -2.03
SCFD1-219ENST00000556413 MXD4Q14582 209 aaPredicted RBP2.4□□□□□ -2.03
SCFD1-219ENST00000556413 LRRC73Q5JTD7 316 aa2.4□□□□□ -2.03
SCFD1-219ENST00000556413 SLC8B1Q6J4K2 584 aa2.4□□□□□ -2.03
SCFD1-219ENST00000556413 SLC39A4Q6P5W5 647 aa2.4□□□□□ -2.03
SCFD1-219ENST00000556413 IGFL2Q6UWQ7 119 aa2.4□□□□□ -2.03
SCFD1-219ENST00000556413 ERN2Q76MJ5 926 aaKnown RBP2.4□□□□□ -2.03
SCFD1-219ENST00000556413 COX8CQ7Z4L0 72 aa2.4□□□□□ -2.03
SCFD1-219ENST00000556413 DNAJB7Q7Z6W7 309 aaPredicted RBP2.4□□□□□ -2.03
SCFD1-219ENST00000556413 TMEM150AQ86TG1 271 aa2.4□□□□□ -2.03
SCFD1-219ENST00000556413 GPBP1Q86WP2 473 aa2.4□□□□□ -2.03
SCFD1-219ENST00000556413 TICAM2Q86XR7 235 aa2.4□□□□□ -2.03
SCFD1-219ENST00000556413 MFSD6LQ8IWD5 586 aa2.4□□□□□ -2.03
SCFD1-219ENST00000556413 EFCAB13Q8IY85 973 aa2.4□□□□□ -2.03
SCFD1-219ENST00000556413 TEX26Q8N6G2 289 aa2.4□□□□□ -2.03
SCFD1-219ENST00000556413 ALLCQ8N6M5 410 aa2.4□□□□□ -2.03
SCFD1-219ENST00000556413 TSTD1Q8NFU3 115 aa2.4□□□□□ -2.03
SCFD1-219ENST00000556413 DEPDC1BQ8WUY9 529 aa2.4□□□□□ -2.03
SCFD1-219ENST00000556413 HEXDCQ8WVB3 486 aa2.4□□□□□ -2.03
SCFD1-219ENST00000556413 GTSF1Q8WW33 167 aa2.4□□□□□ -2.03
SCFD1-219ENST00000556413 ST6GALNAC6Q969X2 333 aa2.4□□□□□ -2.03
SCFD1-219ENST00000556413 IFT74Q96LB3 600 aa2.4□□□□□ -2.03
SCFD1-219ENST00000556413 SENP8Q96LD8 212 aa2.4□□□□□ -2.03
SCFD1-219ENST00000556413 RUNDC3BQ96NL0 473 aa2.4□□□□□ -2.03
SCFD1-219ENST00000556413 MTMR9Q96QG7 549 aa2.4□□□□□ -2.03
SCFD1-219ENST00000556413 SERINC2Q96SA4 455 aa2.4□□□□□ -2.03
SCFD1-219ENST00000556413 CCDC94Q9BW85 323 aaPredicted RBP2.4□□□□□ -2.03
SCFD1-219ENST00000556413 DEFB126Q9BYW3 111 aa2.4□□□□□ -2.03
SCFD1-219ENST00000556413 C2orf40Q9H1Z8 148 aa2.4□□□□□ -2.03
SCFD1-219ENST00000556413 LINC00597Q9H2U6 94 aa2.4□□□□□ -2.03
SCFD1-219ENST00000556413 C5orf66Q9H5L9 145 aa2.4□□□□□ -2.03
SCFD1-219ENST00000556413 FNDC4Q9H6D8 234 aaPredicted RBP2.4□□□□□ -2.03
SCFD1-219ENST00000556413 SH3GLB2Q9NR46 395 aa2.4□□□□□ -2.03
SCFD1-219ENST00000556413 DUS2Q9NX74 493 aaKnown RBP2.4□□□□□ -2.03
SCFD1-219ENST00000556413 CLIC5Q9NZA1 410 aa2.4□□□□□ -2.03
SCFD1-219ENST00000556413 NSG2Q9Y328 171 aa2.4□□□□□ -2.03
SCFD1-219ENST00000556413 TTLL3Q9Y4R7 772 aa2.4□□□□□ -2.03
SCFD1-219ENST00000556413 USP24Q9UPU5 2620 aa2.4□□□□□ -2.03
SCFD1-219ENST00000556413 PHLPP2Q6ZVD8 1323 aa2.4□□□□□ -2.03
SCFD1-219ENST00000556413 MIA3Q5JRA6 1907 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 ZNF292O60281 2723 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 ACACBO00763 2458 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 FER1L5A0AVI2 2057 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 TRAV18A0A075B6X5 111 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 FAM170AA1A519 330 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 BCLAF3A2AJT9 711 aaKnown RBP2.39□□□□□ -2.03
SCFD1-219ENST00000556413 ANXA2P2A6NMY6 339 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 A8MU76 341 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 K7ERI5 159 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 SGK1O00141 431 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 CLDN5O00501 218 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 CYB561D2O14569 222 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 CHADO15335 359 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 DKC1O60832 514 aaKnown RBP eCLIP2.39□□□□□ -2.03
SCFD1-219ENST00000556413 FCGR3BO75015 233 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 LUC7L3O95232 432 aaKnown RBP2.39□□□□□ -2.03
SCFD1-219ENST00000556413 LYPLA2O95372 231 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 ANKRD34CP0C6C1 535 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 ZNF806P0C7X5 589 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 KCNE1P15382 129 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 HMGA1P17096 107 aaKnown RBP2.39□□□□□ -2.03
SCFD1-219ENST00000556413 CYP2F1P24903 491 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 PTAFRP25105 342 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 PSMA3P25788 255 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 HOXA9P31269 272 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 OPRD1P41143 372 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 IFNAR2P48551 515 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 NPY4RP50391 375 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 UCNP55089 124 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 TFAMQ00059 246 aaKnown RBP2.39□□□□□ -2.03
SCFD1-219ENST00000556413 IL10RBQ08334 325 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 ZNF77Q15935 545 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 ZNF542PQ5EBM4 170 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 MUC21Q5SSG8 566 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 CENPPQ6IPU0 288 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 KRTAP5-7Q6L8G8 165 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 ALKAL1Q6UXT8 129 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 SCARA5Q6ZMJ2 495 aa2.39□□□□□ -2.03
SCFD1-219ENST00000556413 TMEM182Q6ZP80 229 aaPredicted RBP2.39□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 93.3 ms