RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 GABRR3A8MPY1 467 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 TNFRSF11BO00300 401 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 SSNA1O43805 119 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 OR1I1O60431 355 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 CFDP00746 253 aaPredicted RBP5.02□□□□□ -1.61
SYNE1-220ENST00000471834 ITGB1P05556 798 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 APEHP13798 732 aaKnown RBP5.02□□□□□ -1.61
SYNE1-220ENST00000471834 ELNP15502 786 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 ENGP17813 658 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 ACRV1P26436 265 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 HTR2BP41595 481 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 HTRA3P83110 453 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 NTRK2Q16620 822 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 NKPD1Q17RQ9 610 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 KLHL12Q53G59 568 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 SYT14Q8NB59 555 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 CNOT9Q92600 299 aaKnown RBP5.02□□□□□ -1.61
SYNE1-220ENST00000471834 RAD51AP1Q96B01 352 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 ZNF354BQ96LW1 612 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 FCRL4Q96PJ5 515 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 SEMA4CQ9C0C4 833 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 SLITRK2Q9H156 845 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 SEBOXQ9HB31 216 aaPredicted RBP5.02□□□□□ -1.61
SYNE1-220ENST00000471834 MBD1Q9UIS9 605 aaPredicted RBP5.02□□□□□ -1.61
SYNE1-220ENST00000471834 SERTAD3Q9UJW9 196 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 ZNF490Q9ULM2 529 aaPredicted RBP5.02□□□□□ -1.61
SYNE1-220ENST00000471834 CACNG2Q9Y698 323 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 KIAA0355O15063 1070 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 ADAMTS4O75173 837 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 AHCYP23526 432 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 MC4RP32245 332 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 PDZD3Q86UT5 571 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 ZNF655Q8N720 491 aaPredicted RBP5.02□□□□□ -1.61
SYNE1-220ENST00000471834 OR11H7Q8NGC8 314 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 ZNF671Q8TAW3 534 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 TRPM4Q8TD43 1214 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 KAT2AQ92830 837 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 PLD4Q96BZ4 506 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 SLC6A17Q9H1V8 727 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 IL21Q9HBE4 155 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 SLAMF7Q9NQ25 335 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 RASL12Q9NYN1 266 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 OPN4Q9UHM6 478 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 ACSL5Q9ULC5 683 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 ACTL7AQ9Y615 435 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 FOXS1O43638 330 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 AKAP8O43823 692 aaKnown RBP5.02□□□□□ -1.61
SYNE1-220ENST00000471834 OR10H2O60403 315 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 ABLIM3O94929 683 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 OR12D1P0DN82 309 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 PRG2P13727 222 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 TBXA2RP21731 343 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 PDHA2P29803 388 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 FABP5Q01469 135 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 TECPR1Q7Z6L1 1165 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 GNPDA2Q8TDQ7 276 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 EBPLQ9BY08 206 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 ATG10Q9H0Y0 220 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 KLHL31Q9H511 634 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 ASB8Q9H765 288 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 POLE4Q9NR33 117 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 VPS29Q9UBQ0 182 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 POLR1DQ9Y2S0 133 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 A0A1W2PQL4 384 aaPredicted RBP5.01□□□□□ -1.61
SYNE1-220ENST00000471834 BCAT2O15382 392 aaPredicted RBP5.01□□□□□ -1.61
SYNE1-220ENST00000471834 TEX28O15482 410 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 GATBO75879 557 aaKnown RBP5.01□□□□□ -1.61
SYNE1-220ENST00000471834 B3GALT4O96024 378 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 SAGP10523 405 aaPredicted RBP5.01□□□□□ -1.61
SYNE1-220ENST00000471834 PAICSP22234 425 aaKnown RBP5.01□□□□□ -1.61
SYNE1-220ENST00000471834 SLC6A4P31645 630 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 CCR7P32248 378 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 ACVRL1P37023 503 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 MAT1AQ00266 395 aaKnown RBP5.01□□□□□ -1.61
SYNE1-220ENST00000471834 FUT5Q11128 374 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 TSC22D1Q15714 1073 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 EXOC3L2Q2M3D2 409 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 REEP3Q6NUK4 255 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 GPR153Q6NV75 609 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 LINC00114Q6XXX2 140 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 USP53Q70EK8 1073 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 FAM220AQ7Z4H9 259 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 SCAMP5Q8TAC9 235 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 STOML3Q8TAV4 291 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 APIPQ96GX9 242 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 KCTD7Q96MP8 289 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 SECISBP2Q96T21 854 aaKnown RBP5.01□□□□□ -1.61
SYNE1-220ENST00000471834 FAM129BQ96TA1 746 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 TM6SF2Q9BZW4 377 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 BTBD1Q9H0C5 482 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 C14orf119Q9NWQ9 140 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 GLYATL1P3A0A0U1RQE8 302 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 FAM157AC9JC47 383 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 CCL22O00626 93 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 AKR7A2O43488 359 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 SLC25A12O75746 678 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 SOX30O94993 753 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 IL2RAP01589 272 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 CLEC2LP0C7M8 214 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 SPI1P17947 270 aa5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms