RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 CD1EP15812 388 aa16.06■□□□□ 0.16
HDDC3-201ENST00000330334 DNAJA1P31689 397 aaKnown RBP16.06■□□□□ 0.16
HDDC3-201ENST00000330334 PCYT1AP49585 367 aa16.06■□□□□ 0.16
HDDC3-201ENST00000330334 MANFP55145 182 aaKnown RBP16.06■□□□□ 0.16
HDDC3-201ENST00000330334 EEFSECP57772 596 aaKnown RBP16.06■□□□□ 0.16
HDDC3-201ENST00000330334 VSNL1P62760 191 aa16.06■□□□□ 0.16
HDDC3-201ENST00000330334 PRR5P85299 388 aa16.06■□□□□ 0.16
HDDC3-201ENST00000330334 OCRLQ01968 901 aa16.06■□□□□ 0.16
HDDC3-201ENST00000330334 C17orf67Q0P5P2 114 aa16.06■□□□□ 0.16
HDDC3-201ENST00000330334 MLC1Q15049 377 aa16.06■□□□□ 0.16
HDDC3-201ENST00000330334 EMBQ6PCB8 327 aa16.06■□□□□ 0.16
HDDC3-201ENST00000330334 ZCCHC12Q6PEW1 402 aa16.06■□□□□ 0.16
HDDC3-201ENST00000330334 LRIG3Q6UXM1 1119 aa16.06■□□□□ 0.16
HDDC3-201ENST00000330334 R3HCC1LQ7Z5L2 792 aaKnown RBP16.06■□□□□ 0.16
HDDC3-201ENST00000330334 CDRT4Q8N9R6 151 aa16.06■□□□□ 0.16
HDDC3-201ENST00000330334 DUSP19Q8WTR2 217 aa16.06■□□□□ 0.16
HDDC3-201ENST00000330334 TWIST2Q8WVJ9 160 aa16.06■□□□□ 0.16
HDDC3-201ENST00000330334 GFM2Q969S9 779 aaKnown RBP16.06■□□□□ 0.16
HDDC3-201ENST00000330334 FAM111AQ96PZ2 611 aa16.06■□□□□ 0.16
HDDC3-201ENST00000330334 TMEM109Q9BVC6 243 aa16.06■□□□□ 0.16
HDDC3-201ENST00000330334 PIGMQ9H3S5 423 aa16.06■□□□□ 0.16
HDDC3-201ENST00000330334 DSN1Q9H410 356 aa16.06■□□□□ 0.16
HDDC3-201ENST00000330334 SH3BP4Q9P0V3 963 aa16.06■□□□□ 0.16
HDDC3-201ENST00000330334 DOCK7Q96N67 2140 aa16.06■□□□□ 0.16
HDDC3-201ENST00000330334 GIMAP1-GIMAP5A0A087WTJ2 511 aa16.05■□□□□ 0.16
HDDC3-201ENST00000330334 TMEM114B3SHH9 223 aa16.05■□□□□ 0.16
HDDC3-201ENST00000330334 SCO2O43819 266 aa16.05■□□□□ 0.16
HDDC3-201ENST00000330334 CHRNGP07510 517 aa16.05■□□□□ 0.16
HDDC3-201ENST00000330334 NGFRP08138 427 aa16.05■□□□□ 0.16
HDDC3-201ENST00000330334 BCKDHAP12694 445 aa16.05■□□□□ 0.16
HDDC3-201ENST00000330334 LCN1P31025 176 aa16.05■□□□□ 0.16
HDDC3-201ENST00000330334 GPC1P35052 558 aa16.05■□□□□ 0.16
HDDC3-201ENST00000330334 RPL38P63173 70 aaKnown RBP16.05■□□□□ 0.16
HDDC3-201ENST00000330334 IFFO1Q0D2I5 559 aa16.05■□□□□ 0.16
HDDC3-201ENST00000330334 FOXF2Q12947 444 aa16.05■□□□□ 0.16
HDDC3-201ENST00000330334 HSPB3Q12988 150 aa16.05■□□□□ 0.16
HDDC3-201ENST00000330334 SNTB1Q13884 538 aaKnown RBP16.05■□□□□ 0.16
HDDC3-201ENST00000330334 ZNF385BQ569K4 471 aa16.05■□□□□ 0.16
HDDC3-201ENST00000330334 WDR93Q6P2C0 686 aa16.05■□□□□ 0.16
HDDC3-201ENST00000330334 OR6Y1Q8NGX8 325 aa16.05■□□□□ 0.16
HDDC3-201ENST00000330334 FAM110BQ8TC76 370 aa16.05■□□□□ 0.16
HDDC3-201ENST00000330334 TCP10LQ8TDR4 215 aa16.05■□□□□ 0.16
HDDC3-201ENST00000330334 AENQ8WTP8 325 aaKnown RBP16.05■□□□□ 0.16
HDDC3-201ENST00000330334 CIDECQ96AQ7 238 aaPredicted RBP16.05■□□□□ 0.16
HDDC3-201ENST00000330334 C1GALT1C1Q96EU7 318 aa16.05■□□□□ 0.16
HDDC3-201ENST00000330334 GIMAP5Q96F15 307 aa16.05■□□□□ 0.16
HDDC3-201ENST00000330334 PPP3R2Q96LZ3 170 aa16.05■□□□□ 0.16
HDDC3-201ENST00000330334 TSSK3Q96PN8 268 aa16.05■□□□□ 0.16
HDDC3-201ENST00000330334 POLDIP3Q9BY77 421 aaKnown RBP16.05■□□□□ 0.16
HDDC3-201ENST00000330334 RTN4RQ9BZR6 473 aa16.05■□□□□ 0.16
HDDC3-201ENST00000330334 CLEC4MQ9H2X3 399 aaPredicted RBP16.05■□□□□ 0.16
HDDC3-201ENST00000330334 FLRT3Q9NZU0 649 aa16.05■□□□□ 0.16
HDDC3-201ENST00000330334 MED11Q9P086 117 aa16.05■□□□□ 0.16
HDDC3-201ENST00000330334 SLC17A7Q9P2U7 560 aa16.05■□□□□ 0.16
HDDC3-201ENST00000330334 BAIAP2L1Q9UHR4 511 aa16.05■□□□□ 0.16
HDDC3-201ENST00000330334 ATP6V1HQ9UI12 483 aa16.05■□□□□ 0.16
HDDC3-201ENST00000330334 EDARQ9UNE0 448 aa16.05■□□□□ 0.16
HDDC3-201ENST00000330334 RPH3AQ9Y2J0 694 aaPredicted RBP16.05■□□□□ 0.16
HDDC3-201ENST00000330334 FIS1Q9Y3D6 152 aa16.05■□□□□ 0.16
HDDC3-201ENST00000330334 MAP1AP78559 2803 aaPredicted RBP16.04■□□□□ 0.16
HDDC3-201ENST00000330334 EEF1E1-BLOC1S5C9J1V9 151 aa16.04■□□□□ 0.16
HDDC3-201ENST00000330334 EEF1E1O43324 174 aaKnown RBP16.04■□□□□ 0.16
HDDC3-201ENST00000330334 AKAP10O43572 662 aa16.04■□□□□ 0.16
HDDC3-201ENST00000330334 UTS2O95399 124 aa16.04■□□□□ 0.16
HDDC3-201ENST00000330334 HK1P19367 917 aa16.04■□□□□ 0.16
HDDC3-201ENST00000330334 MAPK1P28482 360 aa16.04■□□□□ 0.16
HDDC3-201ENST00000330334 RPL3P39023 403 aaKnown RBP16.04■□□□□ 0.16
HDDC3-201ENST00000330334 AGFG1P52594 562 aaKnown RBP16.04■□□□□ 0.16
HDDC3-201ENST00000330334 XKR7Q5GH72 579 aa16.04■□□□□ 0.16
HDDC3-201ENST00000330334 EXOSC6Q5RKV6 272 aaKnown RBP16.04■□□□□ 0.16
HDDC3-201ENST00000330334 OR2A2Q6IF42 318 aa16.04■□□□□ 0.16
HDDC3-201ENST00000330334 ANKRD26P1Q6NSI1 321 aa16.04■□□□□ 0.16
HDDC3-201ENST00000330334 MARCH3Q86UD3 253 aa16.04■□□□□ 0.16
HDDC3-201ENST00000330334 GRAMD2AQ8IUY3 354 aa16.04■□□□□ 0.16
HDDC3-201ENST00000330334 DDIASQ8IXT1 998 aa16.04■□□□□ 0.16
HDDC3-201ENST00000330334 NATD1Q8N6N6 113 aa16.04■□□□□ 0.16
HDDC3-201ENST00000330334 NUP43Q8NFH3 380 aa16.04■□□□□ 0.16
HDDC3-201ENST00000330334 GPR151Q8TDV0 419 aa16.04■□□□□ 0.16
HDDC3-201ENST00000330334 CAVIN3Q969G5 261 aa16.04■□□□□ 0.16
HDDC3-201ENST00000330334 INTS12Q96CB8 462 aaKnown RBP16.04■□□□□ 0.16
HDDC3-201ENST00000330334 MS4A4EQ96PG1 132 aa16.04■□□□□ 0.16
HDDC3-201ENST00000330334 PIGQQ9BRB3 760 aa16.04■□□□□ 0.16
HDDC3-201ENST00000330334 GPATCH1Q9BRR8 931 aaKnown RBP16.04■□□□□ 0.16
HDDC3-201ENST00000330334 TBL1XR1Q9BZK7 514 aa16.04■□□□□ 0.16
HDDC3-201ENST00000330334 KIAA1549Q9HCM3 1950 aa16.04■□□□□ 0.16
HDDC3-201ENST00000330334 GXYLT2A0PJZ3 443 aa16.03■□□□□ 0.16
HDDC3-201ENST00000330334 C17orf51A8MQB3 221 aa16.03■□□□□ 0.16
HDDC3-201ENST00000330334 A8MXE2 369 aa16.03■□□□□ 0.16
HDDC3-201ENST00000330334 TMEM233B4DJY2 109 aa16.03■□□□□ 0.16
HDDC3-201ENST00000330334 ALG1L2C9J202 215 aa16.03■□□□□ 0.16
HDDC3-201ENST00000330334 PIP5K1BO14986 540 aa16.03■□□□□ 0.16
HDDC3-201ENST00000330334 EMC8O43402 210 aa16.03■□□□□ 0.16
HDDC3-201ENST00000330334 TNFRSF21O75509 655 aa16.03■□□□□ 0.16
HDDC3-201ENST00000330334 LYPLA1O75608 230 aaPredicted RBP16.03■□□□□ 0.16
HDDC3-201ENST00000330334 IGKV1D-16P01601 117 aa16.03■□□□□ 0.16
HDDC3-201ENST00000330334 TBXA2RP21731 343 aa16.03■□□□□ 0.16
HDDC3-201ENST00000330334 CPEB4Q17RY0 729 aaKnown RBP eCLIP16.03■□□□□ 0.16
HDDC3-201ENST00000330334 TMEM44Q2T9K0 475 aa16.03■□□□□ 0.16
HDDC3-201ENST00000330334 GALNTL6Q49A17 601 aa16.03■□□□□ 0.16
HDDC3-201ENST00000330334 CHMP1BQ7LBR1 199 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms