RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 DEF8Q6ZN54 512 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 ADGRG2Q8IZP9 1017 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 LNX2Q8N448 690 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 OR10G6Q8NH81 332 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 CLHC1Q8NHS4 586 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 SLC5A11Q8WWX8 675 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 GPA33Q99795 319 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 TINF2Q9BSI4 451 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 DUSP26Q9BV47 211 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 MCCC2Q9HCC0 563 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 SIRT3Q9NTG7 399 aaPredicted RBP5.03□□□□□ -1.6
SYNE1-220ENST00000471834 CLN6Q9NWW5 311 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 SLC23A1Q9UHI7 598 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 SCAMP1O15126 338 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 IFNGP01579 166 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 ERCC1P07992 297 aaPredicted RBP5.03□□□□□ -1.6
SYNE1-220ENST00000471834 NSG1P42857 185 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 SLC1A3P43003 542 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 ARRB1P49407 418 aaPredicted RBP5.03□□□□□ -1.6
SYNE1-220ENST00000471834 MAP2K6P52564 334 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 PDX1P52945 283 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 TSPAN31Q12999 210 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 GSG1Q2KHT4 349 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 OR6K3Q8NGY3 331 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 OR52P1PQ8NH57 321 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 MYOCQ99972 504 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 CHRDQ9H2X0 955 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 NARFLQ9H6Q4 476 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 NMNAT1Q9HAN9 279 aaPredicted RBP5.03□□□□□ -1.6
SYNE1-220ENST00000471834 ZMAT5Q9UDW3 170 aaKnown RBP5.03□□□□□ -1.6
SYNE1-220ENST00000471834 OGG1O15527 345 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 C1QCP02747 245 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 RPS4Y1P22090 263 aaKnown RBP5.02□□□□□ -1.61
SYNE1-220ENST00000471834 CSF2RBP32927 897 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 IL12RB1P42701 662 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 SEPHS1P49903 392 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 LIM2P55344 173 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 SMIM11AP58511 58 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 TGM3Q08188 693 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 FGL1Q08830 312 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 EXOSC2Q13868 293 aaKnown RBP5.02□□□□□ -1.61
SYNE1-220ENST00000471834 FDX2Q6P4F2 183 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 OR6V1Q8N148 313 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 TMEM159Q96B96 161 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 KLHL5Q96PQ7 755 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 CHCHD6Q9BRQ6 235 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 MENTQ9BUN1 341 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 NMNAT2Q9BZQ4 307 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 GOLGA2P5Q9HBQ8 144 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 AASSQ9UDR5 926 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 PRELID3BQ9Y3B1 194 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 PCDHGA9Q9Y5G4 932 aaKnown RBP5.02□□□□□ -1.61
SYNE1-220ENST00000471834 CCDC182A6NF36 153 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 ZNF98A6NK75 572 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 A6NL46 340 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 AIPO00170 330 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 GRM6O15303 877 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 UBXN7O94888 489 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 LDOC1O95751 146 aaPredicted RBP5.02□□□□□ -1.61
SYNE1-220ENST00000471834 HIST1H2ABP04908 130 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 ANXA3P12429 323 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 PPP2R1BP30154 601 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 CNR2P34972 360 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 SPAM1P38567 509 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 TGM4P49221 684 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 VEGFBP49765 207 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 E2F1Q01094 437 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 HMGCS1Q01581 520 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 GAS6Q14393 721 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 ZNF385BQ569K4 471 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 HIST3H2AQ7L7L0 130 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 KRTCAP2Q8N6L1 136 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 HIST1H2ACQ93077 130 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 GPX7Q96SL4 187 aaPredicted RBP5.02□□□□□ -1.61
SYNE1-220ENST00000471834 NYNRINQ9P2P1 1898 aaKnown RBP5.02□□□□□ -1.61
SYNE1-220ENST00000471834 TRIP11Q15643 1979 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 GPRIN2O60269 458 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 IFNA16P05015 189 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 ANXA5P08758 320 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 DRD5P21918 477 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 DGKGP49619 791 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 MRPS6P82932 125 aaKnown RBP5.02□□□□□ -1.61
SYNE1-220ENST00000471834 FGL2Q14314 439 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 GGTLC2Q14390 218 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 FCN2Q15485 313 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 SLC5A12Q1EHB4 618 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 NDUFAF6Q330K2 333 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 FBXO48Q5FWF7 155 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 DGLUCYQ7Z3D6 616 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 MS4A15Q8N5U1 240 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 BVESQ8NE79 360 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 OR8D4Q8NGM9 314 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 SELENOMQ8WWX9 145 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 ADAM2Q99965 735 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 PDCD10Q9BUL8 212 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 SLC19A3Q9BZV2 496 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 ANAPC10Q9UM13 185 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 RHBDD3Q9Y3P4 386 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 CMAHPQ9Y471 501 aa5.02□□□□□ -1.61
SYNE1-220ENST00000471834 GSAPA4D1B5 854 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms