RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 SPACA9Q96E40 222 aaPredicted RBP13.8□□□□□ -0.2
NUP54-213ENST00000513352 SLC35A4Q96G79 324 aa13.8□□□□□ -0.2
NUP54-213ENST00000513352 STACQ99469 402 aa13.8□□□□□ -0.2
NUP54-213ENST00000513352 SLC39A3Q9BRY0 314 aa13.8□□□□□ -0.2
NUP54-213ENST00000513352 TRIM8Q9BZR9 551 aa13.8□□□□□ -0.2
NUP54-213ENST00000513352 RNF32Q9H0A6 362 aa13.8□□□□□ -0.2
NUP54-213ENST00000513352 PIGUQ9H490 435 aa13.8□□□□□ -0.2
NUP54-213ENST00000513352 EFCAB1Q9HAE3 211 aa13.8□□□□□ -0.2
NUP54-213ENST00000513352 DUSP22Q9NRW4 184 aa13.8□□□□□ -0.2
NUP54-213ENST00000513352 MRTO4Q9UKD2 239 aaKnown RBP13.8□□□□□ -0.2
NUP54-213ENST00000513352 PCDHGB3Q9Y5G1 929 aa13.8□□□□□ -0.2
NUP54-213ENST00000513352 EPG5Q9HCE0 2579 aa13.8□□□□□ -0.2
NUP54-213ENST00000513352 TO15178 435 aa13.79□□□□□ -0.2
NUP54-213ENST00000513352 HS6ST1O60243 411 aa13.79□□□□□ -0.2
NUP54-213ENST00000513352 PPM1BO75688 479 aa13.79□□□□□ -0.2
NUP54-213ENST00000513352 UNC5CO95185 931 aa13.79□□□□□ -0.2
NUP54-213ENST00000513352 CBX6O95503 412 aa13.79□□□□□ -0.2
NUP54-213ENST00000513352 AGR2O95994 175 aa13.79□□□□□ -0.2
NUP54-213ENST00000513352 FBXO45P0C2W1 286 aa13.79□□□□□ -0.2
NUP54-213ENST00000513352 ESRRAP11474 423 aaPredicted RBP13.79□□□□□ -0.2
NUP54-213ENST00000513352 SFTPCP11686 197 aa13.79□□□□□ -0.2
NUP54-213ENST00000513352 ETFAP13804 333 aa13.79□□□□□ -0.2
NUP54-213ENST00000513352 HOXB9P17482 250 aaPredicted RBP13.79□□□□□ -0.2
NUP54-213ENST00000513352 ATP6V1C1P21283 382 aa13.79□□□□□ -0.2
NUP54-213ENST00000513352 PIGAP37287 484 aa13.79□□□□□ -0.2
NUP54-213ENST00000513352 CD97P48960 835 aa13.79□□□□□ -0.2
NUP54-213ENST00000513352 PSMD4P55036 377 aaKnown RBP13.79□□□□□ -0.2
NUP54-213ENST00000513352 MTPNP58546 118 aa13.79□□□□□ -0.2
NUP54-213ENST00000513352 DSTNP60981 165 aa13.79□□□□□ -0.2
NUP54-213ENST00000513352 PSPHP78330 225 aa13.79□□□□□ -0.2
NUP54-213ENST00000513352 DCST2Q5T1A1 773 aa13.79□□□□□ -0.2
NUP54-213ENST00000513352 CCNJQ5T5M9 372 aa13.79□□□□□ -0.2
NUP54-213ENST00000513352 FAM91A1Q658Y4 838 aa13.79□□□□□ -0.2
NUP54-213ENST00000513352 TRPM8Q7Z2W7 1104 aa13.79□□□□□ -0.2
NUP54-213ENST00000513352 GPALPP1Q8IXQ4 340 aa13.79□□□□□ -0.2
NUP54-213ENST00000513352 BCORP1Q8N888 145 aa13.79□□□□□ -0.2
NUP54-213ENST00000513352 CATSPER1Q8NEC5 780 aa13.79□□□□□ -0.2
NUP54-213ENST00000513352 MIPOL1Q8TD10 442 aa13.79□□□□□ -0.2
NUP54-213ENST00000513352 LRRC58Q96CX6 371 aa13.79□□□□□ -0.2
NUP54-213ENST00000513352 C5orf34Q96MH7 638 aa13.79□□□□□ -0.2
NUP54-213ENST00000513352 COL21A1Q96P44 957 aa13.79□□□□□ -0.2
NUP54-213ENST00000513352 SIGLEC12Q96PQ1 595 aa13.79□□□□□ -0.2
NUP54-213ENST00000513352 ADOQ96SZ5 270 aa13.79□□□□□ -0.2
NUP54-213ENST00000513352 CPPED1Q9BRF8 314 aaPredicted RBP13.79□□□□□ -0.2
NUP54-213ENST00000513352 THUMPD3Q9BV44 507 aaKnown RBP13.79□□□□□ -0.2
NUP54-213ENST00000513352 BTBD2Q9BX70 525 aa13.79□□□□□ -0.2
NUP54-213ENST00000513352 KLHL1Q9NR64 748 aa13.79□□□□□ -0.2
NUP54-213ENST00000513352 EXD2Q9NVH0 621 aa13.79□□□□□ -0.2
NUP54-213ENST00000513352 CORO2BQ9UQ03 480 aa13.79□□□□□ -0.2
NUP54-213ENST00000513352 CSAG2Q9Y5P2 127 aa13.79□□□□□ -0.2
NUP54-213ENST00000513352 KCNE3Q9Y6H6 103 aa13.79□□□□□ -0.2
NUP54-213ENST00000513352 TRBV5-3A0A0A0MS03 114 aa13.78□□□□□ -0.2
NUP54-213ENST00000513352 TP53I11O14683 189 aa13.78□□□□□ -0.2
NUP54-213ENST00000513352 SLC25A12O75746 678 aa13.78□□□□□ -0.2
NUP54-213ENST00000513352 MAP3K8P41279 467 aa13.78□□□□□ -0.2
NUP54-213ENST00000513352 MAN2A2P49641 1150 aa13.78□□□□□ -0.2
NUP54-213ENST00000513352 HPCAP84074 193 aa13.78□□□□□ -0.2
NUP54-213ENST00000513352 KRT72Q14CN4 511 aa13.78□□□□□ -0.2
NUP54-213ENST00000513352 RGNQ15493 299 aa13.78□□□□□ -0.2
NUP54-213ENST00000513352 ZNF791Q3KP31 576 aaPredicted RBP13.78□□□□□ -0.2
NUP54-213ENST00000513352 GPAT3Q53EU6 434 aa13.78□□□□□ -0.2
NUP54-213ENST00000513352 RUNDC3AQ59EK9 446 aa13.78□□□□□ -0.2
NUP54-213ENST00000513352 SPINK14Q6IE38 97 aa13.78□□□□□ -0.2
NUP54-213ENST00000513352 IGFL2Q6UWQ7 119 aa13.78□□□□□ -0.2
NUP54-213ENST00000513352 LYPD8Q6UX82 237 aa13.78□□□□□ -0.2
NUP54-213ENST00000513352 RTL4Q6ZR62 310 aa13.78□□□□□ -0.2
NUP54-213ENST00000513352 DND1Q8IYX4 353 aaKnown RBP13.78□□□□□ -0.2
NUP54-213ENST00000513352 OR10G3Q8NGC4 313 aa13.78□□□□□ -0.2
NUP54-213ENST00000513352 HAS2Q92819 552 aa13.78□□□□□ -0.2
NUP54-213ENST00000513352 HOXB13Q92826 284 aaPredicted RBP13.78□□□□□ -0.2
NUP54-213ENST00000513352 ROPN1LQ96C74 230 aa13.78□□□□□ -0.2
NUP54-213ENST00000513352 ANKRD27Q96NW4 1050 aa13.78□□□□□ -0.2
NUP54-213ENST00000513352 TIMMDC1Q9NPL8 285 aa13.78□□□□□ -0.2
NUP54-213ENST00000513352 GIN1Q9NXP7 522 aa13.78□□□□□ -0.2
NUP54-213ENST00000513352 EML6Q6ZMW3 1958 aa13.78□□□□□ -0.2
NUP54-213ENST00000513352 TMEM247A6NEH6 219 aa13.77□□□□□ -0.21
NUP54-213ENST00000513352 HMGN4O00479 90 aa13.77□□□□□ -0.21
NUP54-213ENST00000513352 ASNA1O43681 348 aa13.77□□□□□ -0.21
NUP54-213ENST00000513352 SLC28A2O43868 658 aa13.77□□□□□ -0.21
NUP54-213ENST00000513352 UGT2B11O75310 529 aa13.77□□□□□ -0.21
NUP54-213ENST00000513352 SOX30O94993 753 aa13.77□□□□□ -0.21
NUP54-213ENST00000513352 KCNK2O95069 426 aa13.77□□□□□ -0.21
NUP54-213ENST00000513352 IL33O95760 270 aa13.77□□□□□ -0.21
NUP54-213ENST00000513352 AK1P00568 194 aa13.77□□□□□ -0.21
NUP54-213ENST00000513352 NPPAP01160 153 aa13.77□□□□□ -0.21
NUP54-213ENST00000513352 IGKV1D-16P01601 117 aa13.77□□□□□ -0.21
NUP54-213ENST00000513352 P04436 131 aa13.77□□□□□ -0.21
NUP54-213ENST00000513352 NR2F1P10589 423 aa13.77□□□□□ -0.21
NUP54-213ENST00000513352 CD46P15529 392 aa13.77□□□□□ -0.21
NUP54-213ENST00000513352 RPP38P78345 283 aaKnown RBP13.77□□□□□ -0.21
NUP54-213ENST00000513352 TXNL4AP83876 142 aaKnown RBP13.77□□□□□ -0.21
NUP54-213ENST00000513352 FADDQ13158 208 aa13.77□□□□□ -0.21
NUP54-213ENST00000513352 EFR3AQ14156 821 aa13.77□□□□□ -0.21
NUP54-213ENST00000513352 SELPLGQ14242 412 aa13.77□□□□□ -0.21
NUP54-213ENST00000513352 NTRK2Q16620 822 aa13.77□□□□□ -0.21
NUP54-213ENST00000513352 CYP51A1Q16850 503 aa13.77□□□□□ -0.21
NUP54-213ENST00000513352 ZNF766Q5HY98 468 aa13.77□□□□□ -0.21
NUP54-213ENST00000513352 EXOSC6Q5RKV6 272 aaKnown RBP13.77□□□□□ -0.21
NUP54-213ENST00000513352 GCNT6Q5T4J0 391 aa13.77□□□□□ -0.21
NUP54-213ENST00000513352 DESI1Q6ICB0 168 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms