RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 DUX4L7P0CJ90 424 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 TACR2P21452 398 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 GPR1P46091 355 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 RPS11P62280 158 aaKnown RBP eCLIP5.03□□□□□ -1.6
SYNE1-220ENST00000471834 RAET1GQ6H3X3 334 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 FAM151BQ6UXP7 276 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 OXR1Q8N573 874 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 ENKURQ8TC29 256 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 ADAMTS19Q8TE59 1207 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 OR4K3Q96R72 315 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 SEC22CQ9BRL7 303 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 EXOSC3Q9NQT5 275 aaKnown RBP5.03□□□□□ -1.6
SYNE1-220ENST00000471834 DUX4Q9UBX2 424 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 CXCL14O95715 111 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 FURINP09958 794 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 MPGP29372 298 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 TAS2R41P59536 307 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 RPL38P63173 70 aaKnown RBP5.03□□□□□ -1.6
SYNE1-220ENST00000471834 SSBP1Q04837 148 aaKnown RBP5.03□□□□□ -1.6
SYNE1-220ENST00000471834 PTCHD3Q3KNS1 767 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 FAAH2Q6GMR7 532 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 CDC73Q6P1J9 531 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 MED25Q71SY5 747 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 KLBQ86Z14 1044 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 APCDD1Q8J025 514 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 CIDECQ96AQ7 238 aaPredicted RBP5.03□□□□□ -1.6
SYNE1-220ENST00000471834 RANBP3Q9H6Z4 567 aaPredicted RBP5.03□□□□□ -1.6
SYNE1-220ENST00000471834 ANKRD10Q9NXR5 420 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 A4GNTQ9UNA3 340 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 CAMK2AQ9UQM7 478 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 ALG5Q9Y673 324 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 TBC1D3DA0A087WVF3 549 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 TBC1D3IA0A087WXS9 549 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 TBC1D3EA0A087X179 549 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 TBC1D3KA0A087X1G2 549 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 PRAMEF33A0A0G2JMD5 474 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 TBC1D3FA6NER0 549 aaPredicted RBP5.03□□□□□ -1.6
SYNE1-220ENST00000471834 MEIS3P2A8K0S8 358 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 TBC1D3LB9A6J9 549 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 GTPBP1O00178 669 aaKnown RBP5.03□□□□□ -1.6
SYNE1-220ENST00000471834 TGM5O43548 720 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 SLC28A2O43868 658 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 PRAMEF10O60809 474 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 B4GALT2O60909 372 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 RDH16O75452 317 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 TBC1D3HP0C7X1 549 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 IFNGR1P15260 489 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 SLC2A5P22732 501 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 GPR15P49685 360 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 AGERQ15109 404 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 TBC1D3GQ6DHY5 549 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 TBC1D3CQ6IPX1 549 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 Q6ZPB1 254 aaPredicted RBP5.03□□□□□ -1.6
SYNE1-220ENST00000471834 CDK20Q8IZL9 346 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 TBC1D3Q8IZP1 549 aaPredicted RBP5.03□□□□□ -1.6
SYNE1-220ENST00000471834 LYPD6BQ8NI32 183 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 XAGE5Q8WWM1 108 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 AKAP1Q92667 903 aaKnown RBP eCLIP5.03□□□□□ -1.6
SYNE1-220ENST00000471834 LINGO1Q96FE5 620 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 MRPL48Q96GC5 212 aaKnown RBP5.03□□□□□ -1.6
SYNE1-220ENST00000471834 GAREM1Q9H706 876 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 KCTD5Q9NXV2 234 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 COA4Q9NYJ1 87 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 ABRACLQ9P1F3 81 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 MYLKQ15746 1914 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 A0A1W2PQH9 124 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 SNTNA6NMZ2 147 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 LOC730098B7Z3J9 87 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 KRT33AO76009 404 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 IFNA14P01570 189 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 GIPP09681 153 aaPredicted RBP5.03□□□□□ -1.6
SYNE1-220ENST00000471834 RPL6Q02878 288 aaKnown RBP5.03□□□□□ -1.6
SYNE1-220ENST00000471834 AANATQ16613 207 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 LGALSLQ3ZCW2 172 aaPredicted RBP5.03□□□□□ -1.6
SYNE1-220ENST00000471834 ZNF648Q5T619 568 aaPredicted RBP5.03□□□□□ -1.6
SYNE1-220ENST00000471834 MRM1Q6IN84 353 aaKnown RBP5.03□□□□□ -1.6
SYNE1-220ENST00000471834 ZNF765Q7L2R6 523 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 C16orf62Q7Z3J2 963 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 IL22RA1Q8N6P7 574 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 POMGNT2Q8NAT1 580 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 LIPHQ8WWY8 451 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 FAM131CQ96AQ9 280 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 OMA1Q96E52 524 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 RNFT2Q96EX2 444 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 MRGPRX3Q96LB0 322 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 ARL15Q9NXU5 204 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 SLC39A1Q9NY26 324 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 ZMIZ1Q9ULJ6 1067 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 SNX11Q9Y5W9 270 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 NUBP2Q9Y5Y2 271 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 TRAV19A0A0A6YYK7 116 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 ABHD14A-ACY1A0A1B0GW23 586 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 ZSCAN5BA6NJL1 495 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 MCRIP1C9JLW8 97 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 EVI2BP34910 448 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 TSFMP43897 325 aaKnown RBP5.03□□□□□ -1.6
SYNE1-220ENST00000471834 LAPTM5Q13571 262 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 CARTPTQ16568 116 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 PYHIN1Q6K0P9 492 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 POMZP3Q6PJE2 187 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms