RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 SLC19A2O60779 497 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 INHAP05111 366 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 LAMP1P11279 417 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 FLT3LGP49771 235 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 C1DQ13901 141 aaKnown RBP5.04□□□□□ -1.6
SYNE1-220ENST00000471834 VGLL4Q14135 290 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 ZMAT1Q5H9K5 638 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 KLHL24Q6TFL4 600 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 ZBTB46Q86UZ6 589 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 BRIX1Q8TDN6 353 aaKnown RBP5.04□□□□□ -1.6
SYNE1-220ENST00000471834 NELL1Q92832 810 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 MYEOVQ96EZ4 313 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 TOX2Q96NM4 488 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 TAAR9Q96RI9 348 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 CUTCQ9NTM9 273 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 HS3ST2Q9Y278 367 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 CARHSP1Q9Y2V2 147 aaKnown RBP5.04□□□□□ -1.6
SYNE1-220ENST00000471834 EXOSC1Q9Y3B2 195 aaKnown RBP5.04□□□□□ -1.6
SYNE1-220ENST00000471834 PRKAB1Q9Y478 270 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 POLR3HQ9Y535 204 aaPredicted RBP5.04□□□□□ -1.6
SYNE1-220ENST00000471834 SNX10Q9Y5X0 201 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 DOCK4Q8N1I0 1966 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 C2orf78A6NCI8 922 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 PEX12O00623 359 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 PLPP2O43688 288 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 APODP05090 189 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 NR2F6P10588 404 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 ITGA3P26006 1051 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 TRA2BP62995 288 aaKnown RBP5.04□□□□□ -1.6
SYNE1-220ENST00000471834 GPR176Q14439 515 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 ANXA8L1Q5VT79 327 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 PNPLA1Q8N8W4 532 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 LINC00615Q96LM1 132 aaPredicted RBP5.04□□□□□ -1.6
SYNE1-220ENST00000471834 WRAP53Q9BUR4 548 aaKnown RBP5.04□□□□□ -1.6
SYNE1-220ENST00000471834 RNF167Q9H6Y7 350 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 FKBPLQ9UIM3 349 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 BOLA1Q9Y3E2 137 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 CHST2Q9Y4C5 530 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 GPR171O14626 319 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 ARPC3O15145 178 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 SUV39H1O43463 412 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 ORC5O43913 435 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 TLR5O60602 858 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 LILRB5O75023 590 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 KLKB1P03952 638 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 ELAVL4P26378 380 aaKnown RBP5.04□□□□□ -1.6
SYNE1-220ENST00000471834 TIA1P31483 386 aaKnown RBP eCLIP5.04□□□□□ -1.6
SYNE1-220ENST00000471834 FMO3P31513 532 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 ARF5P84085 180 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 PTSQ03393 145 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 ZNF345Q14585 488 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 TMEM81Q6P7N7 255 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 GCNT7Q6ZNI0 430 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 USP45Q70EL2 814 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 CIR1Q86X95 450 aaPredicted RBP5.04□□□□□ -1.6
SYNE1-220ENST00000471834 THEM6Q8WUY1 208 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 PHYHIPLQ96FC7 376 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 PGLYRP3Q96LB9 341 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 ARHGDIGQ99819 225 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 MND1Q9BWT6 205 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 EXD2Q9NVH0 621 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 IGSF6O95976 241 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 PIRTP0C851 137 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 ZNF7P17097 686 aaPredicted RBP5.04□□□□□ -1.6
SYNE1-220ENST00000471834 POU3F3P20264 500 aaPredicted RBP5.04□□□□□ -1.6
SYNE1-220ENST00000471834 AFF1P51825 1210 aaKnown RBP5.04□□□□□ -1.6
SYNE1-220ENST00000471834 NKX2-5P52952 324 aaPredicted RBP5.04□□□□□ -1.6
SYNE1-220ENST00000471834 SIM1P81133 766 aaPredicted RBP5.04□□□□□ -1.6
SYNE1-220ENST00000471834 PLAURQ03405 335 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 IL15RAQ13261 267 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 FCRLBQ6BAA4 426 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 OR6K2Q8NGY2 324 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 OR8K5Q8NH50 307 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 OR56B4Q8NH76 319 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 NUDT8Q8WV74 236 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 AP3S1Q92572 193 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 HTRA1Q92743 480 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 NARS2Q96I59 477 aaKnown RBP5.04□□□□□ -1.6
SYNE1-220ENST00000471834 MRI1Q9BV20 369 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 CPEB1Q9BZB8 566 aaKnown RBP5.04□□□□□ -1.6
SYNE1-220ENST00000471834 EQTNQ9NQ60 294 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 DLL4Q9NR61 685 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 FAM105AQ9NUU6 356 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 TRPV2Q9Y5S1 764 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 A0A1B0GW55 424 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 SLC22A23A1A5C7 686 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 ANKDD1BA6NHY2 528 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 PSMD9O00233 223 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 TREHO43280 583 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 ACSL4O60488 711 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 OR6A2O95222 327 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 FGF19O95750 216 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 FADS2O95864 444 aaKnown RBP5.03□□□□□ -1.6
SYNE1-220ENST00000471834 CLTBP09497 229 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 CCNYL3P0C7X3 344 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 DUX4L2P0CJ85 424 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 DUX4L3P0CJ86 424 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 DUX4L4P0CJ87 422 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 DUX4L5P0CJ88 424 aa5.03□□□□□ -1.6
SYNE1-220ENST00000471834 DUX4L6P0CJ89 424 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 164 ms