RNA–Protein interactions for RNA: ENST00000586792.5

ZNF540-204, Transcript of zinc finger protein 540, human

TSL 3 BASIC

Gene ZNF540, Length 564 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ZNF540-204	ENST00000586792	SPATA24	Q86W54	205 aa		4.44	□□□□□ -1.7
ZNF540-204	ENST00000586792	RASGRP3	Q8IV61	690 aa		4.44	□□□□□ -1.7
ZNF540-204	ENST00000586792	KLHDC8B	Q8IXV7	354 aa		4.44	□□□□□ -1.7
ZNF540-204	ENST00000586792	MPP5	Q8N3R9	675 aa		4.44	□□□□□ -1.7
ZNF540-204	ENST00000586792	FBXW8	Q8N3Y1	598 aa		4.44	□□□□□ -1.7
ZNF540-204	ENST00000586792	RASGEF1C	Q8N431	466 aa		4.44	□□□□□ -1.7
ZNF540-204	ENST00000586792	GALNT4	Q8N4A0	578 aa		4.44	□□□□□ -1.7
ZNF540-204	ENST00000586792	PRELID2	Q8N945	189 aa		4.44	□□□□□ -1.7
ZNF540-204	ENST00000586792	SIDT2	Q8NBJ9	832 aa	Known RBP	4.44	□□□□□ -1.7
ZNF540-204	ENST00000586792	OR8K3	Q8NH51	312 aa		4.44	□□□□□ -1.7
ZNF540-204	ENST00000586792	ACTRT1	Q8TDG2	376 aa		4.44	□□□□□ -1.7
ZNF540-204	ENST00000586792	ART4	Q93070	314 aa		4.44	□□□□□ -1.7
ZNF540-204	ENST00000586792	SAT2	Q96F10	170 aa	Predicted RBP	4.44	□□□□□ -1.7
ZNF540-204	ENST00000586792	MS4A14	Q96JA4	679 aa		4.44	□□□□□ -1.7
ZNF540-204	ENST00000586792	CAPZA3	Q96KX2	299 aa		4.44	□□□□□ -1.7
ZNF540-204	ENST00000586792	ATP6V1G3	Q96LB4	118 aa		4.44	□□□□□ -1.7
ZNF540-204	ENST00000586792	LINC00615	Q96LM1	132 aa	Predicted RBP	4.44	□□□□□ -1.7
ZNF540-204	ENST00000586792	CMTM3	Q96MX0	182 aa		4.44	□□□□□ -1.7
ZNF540-204	ENST00000586792	PANX3	Q96QZ0	392 aa		4.44	□□□□□ -1.7
ZNF540-204	ENST00000586792	CD180	Q99467	661 aa		4.44	□□□□□ -1.7
ZNF540-204	ENST00000586792	NAPG	Q99747	312 aa	Predicted RBP	4.44	□□□□□ -1.7
ZNF540-204	ENST00000586792	VRK1	Q99986	396 aa	Predicted RBP	4.44	□□□□□ -1.7
ZNF540-204	ENST00000586792	TUBB6	Q9BUF5	446 aa		4.44	□□□□□ -1.7
ZNF540-204	ENST00000586792	DDA1	Q9BW61	102 aa		4.44	□□□□□ -1.7
ZNF540-204	ENST00000586792	WNT5B	Q9H1J7	359 aa		4.44	□□□□□ -1.7
ZNF540-204	ENST00000586792	CHST8	Q9H2A9	424 aa		4.44	□□□□□ -1.7
ZNF540-204	ENST00000586792	HIPK2	Q9H2X6	1198 aa		4.44	□□□□□ -1.7
ZNF540-204	ENST00000586792	SRMS	Q9H3Y6	488 aa		4.44	□□□□□ -1.7
ZNF540-204	ENST00000586792	XKR8	Q9H6D3	395 aa		4.44	□□□□□ -1.7
ZNF540-204	ENST00000586792	COG4	Q9H9E3	785 aa		4.44	□□□□□ -1.7
ZNF540-204	ENST00000586792	SLC40A1	Q9NP59	571 aa		4.44	□□□□□ -1.7
ZNF540-204	ENST00000586792	ASCL3	Q9NQ33	180 aa		4.44	□□□□□ -1.7
ZNF540-204	ENST00000586792	HRASLS2	Q9NWW9	162 aa		4.44	□□□□□ -1.7
ZNF540-204	ENST00000586792	SOHLH2	Q9NX45	425 aa		4.44	□□□□□ -1.7
ZNF540-204	ENST00000586792	SLC23A2	Q9UGH3	650 aa		4.44	□□□□□ -1.7
ZNF540-204	ENST00000586792	GNPTG	Q9UJJ9	305 aa		4.44	□□□□□ -1.7
ZNF540-204	ENST00000586792	PSME2	Q9UL46	239 aa		4.44	□□□□□ -1.7
ZNF540-204	ENST00000586792	RIMKLB	Q9ULI2	386 aa		4.44	□□□□□ -1.7
ZNF540-204	ENST00000586792	CLEC4A	Q9UMR7	237 aa		4.44	□□□□□ -1.7
ZNF540-204	ENST00000586792	SNX12	Q9UMY4	172 aa		4.44	□□□□□ -1.7
ZNF540-204	ENST00000586792	DAPP1	Q9UN19	280 aa		4.44	□□□□□ -1.7
ZNF540-204	ENST00000586792	ASF1A	Q9Y294	204 aa		4.44	□□□□□ -1.7
ZNF540-204	ENST00000586792	MED16	Q9Y2X0	877 aa		4.44	□□□□□ -1.7
ZNF540-204	ENST00000586792	GMEB1	Q9Y692	573 aa		4.44	□□□□□ -1.7
ZNF540-204	ENST00000586792	SAR1B	Q9Y6B6	198 aa		4.44	□□□□□ -1.7
ZNF540-204	ENST00000586792	MAD1L1	Q9Y6D9	718 aa		4.44	□□□□□ -1.7
ZNF540-204	ENST00000586792	CLCA3P	Q9Y6N3	262 aa		4.44	□□□□□ -1.7
ZNF540-204	ENST00000586792	MN1	Q10571	1320 aa	Predicted RBP	4.44	□□□□□ -1.7
ZNF540-204	ENST00000586792	PCNX2	A6NKB5	2137 aa		4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	COL27A1	Q8IZC6	1860 aa	Predicted RBP	4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	NCOR2	Q9Y618	2525 aa		4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	WDR87	Q6ZQQ6	2873 aa		4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	IGLV3-16	A0A075B6K0	115 aa		4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	TRBV5-4	A0A0C4DH59	114 aa		4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	MAGEB16	A2A368	324 aa		4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	OR6C74	A6NCV1	312 aa		4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	OR5K3	A6NET4	321 aa		4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	TLCD2	A6NGC4	264 aa		4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	OR51F1	A6NGY5	319 aa		4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	OR6C76	A6NM76	312 aa		4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	C2orf74	A8MZ97	194 aa		4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792		H3BMM5	538 aa		4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	GOLGA8M	H3BSY2	632 aa		4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	CCDC188	H7C350	402 aa		4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	GAPDHS	O14556	408 aa	Predicted RBP	4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	CTDSP2	O14595	271 aa		4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	RASGRF2	O14827	1237 aa		4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	T	O15178	435 aa		4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	CASC3	O15234	703 aa	Known RBP	4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	ZSCAN9	O15535	394 aa	Predicted RBP	4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	CYTIP	O60759	359 aa		4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	SEC14L2	O76054	403 aa		4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	VAPB	O95292	243 aa		4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	NPPA	P01160	153 aa		4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	C9	P02748	559 aa		4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	EIF2S1	P05198	315 aa	Known RBP	4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	S100A6	P06703	90 aa		4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	ANKRD34C	P0C6C1	535 aa		4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	MLN	P12872	115 aa		4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	JAK1	P23458	1154 aa		4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	FOXN2	P32314	431 aa		4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	SHMT2	P34897	504 aa		4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	IDUA	P35475	653 aa		4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	COIL	P38432	576 aa	Predicted RBP	4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	GRIA1	P42261	906 aa		4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	ARCN1	P48444	511 aa	Known RBP	4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	GFER	P55789	205 aa		4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	EIF3B	P55884	814 aa	Known RBP	4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	SOX8	P57073	446 aa		4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	NANOS2	P60321	138 aa	Known RBP	4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	CRADD	P78560	199 aa		4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	HOXA4	Q00056	320 aa	Predicted RBP	4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	DR1	Q01658	176 aa		4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	ACY1	Q03154	408 aa		4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	TLE3	Q04726	772 aa		4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	HSPA14	Q0VDF9	509 aa		4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	CHIT1	Q13231	466 aa		4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	TUBB2A	Q13885	445 aa		4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	DHX34	Q14147	1143 aa	Known RBP	4.43	□□□□□ -1.7
ZNF540-204	ENST00000586792	CLCA4	Q14CN2	919 aa		4.43	□□□□□ -1.7

Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms