RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 CT45A8P0DMV1 189 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 CT45A9P0DMV2 189 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 DAP3P51398 398 aaKnown RBP3.88□□□□□ -1.79
USH2A-202ENST00000366942 RAB8AP61006 207 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 ARF5P84085 180 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 GGTLC2Q14390 218 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 PTPRRQ15256 657 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 TEX44Q53QW1 395 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 CT45A2Q5DJT8 189 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 CT45A1Q5HYN5 189 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 GCNT6Q5T4J0 391 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 Q6ZVL8 140 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 NDUFAF7Q7L592 441 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 SPATA19Q7Z5L4 167 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 KLBQ86Z14 1044 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 OR2L3Q8NG85 312 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 CT45A3Q8NHU0 189 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 RHEBL1Q8TAI7 183 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 POC1BQ8TC44 478 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 ISL2Q96A47 359 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 SENP5Q96HI0 755 aaPredicted RBP3.88□□□□□ -1.79
USH2A-202ENST00000366942 UHRF2Q96PU4 802 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 CACNG6Q9BXT2 260 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 PITPNM3Q9BZ71 974 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 DEFB127Q9H1M4 99 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 TMEM165Q9HC07 324 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 SLC22A11Q9NSA0 550 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 ETAA1Q9NY74 926 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 DNAJB4Q9UDY4 337 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 MRPS7Q9Y2R9 242 aaKnown RBP3.88□□□□□ -1.79
USH2A-202ENST00000366942 GIMAP1-GIMAP5A0A087WTJ2 511 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 HIDE1A8MVS5 230 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 B4E171 279 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 C9orf172C9J069 976 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 RFXANKO14593 260 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 OPN1MWP04001 364 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 IFNA4P05014 189 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 HCKP08631 526 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 OPN1MW2P0DN77 364 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 OPN1MW3P0DN78 364 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 MYOGP15173 224 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 NR0B1P51843 470 aaKnown RBP3.88□□□□□ -1.79
USH2A-202ENST00000366942 CTBSQ01459 385 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 NHLH1Q02575 133 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 CDC20Q12834 499 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 TPBGQ13641 420 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 SLITRK4Q8IW52 837 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 NT5C3BQ969T7 300 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 BPIFA2Q96DR5 249 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 SLC47A1Q96FL8 570 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 DUS3LQ96G46 650 aaKnown RBP3.88□□□□□ -1.79
USH2A-202ENST00000366942 PEX11GQ96HA9 241 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 MRPL45Q9BRJ2 306 aaKnown RBP3.88□□□□□ -1.79
USH2A-202ENST00000366942 URM1Q9BTM9 101 aaKnown RBP3.88□□□□□ -1.79
USH2A-202ENST00000366942 ULBP2Q9BZM5 246 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 KATNBL1Q9H079 304 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 CLEC4MQ9H2X3 399 aaPredicted RBP3.88□□□□□ -1.79
USH2A-202ENST00000366942 DENND2DQ9H6A0 471 aaPredicted RBP3.88□□□□□ -1.79
USH2A-202ENST00000366942 ZNF221Q9UK13 617 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 ICKQ9UPZ9 632 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 CNTN6Q9UQ52 1028 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 SLC6A5Q9Y345 797 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 NDUFAF1Q9Y375 327 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 A0A0G2JND7 137 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 A0A0X1KG70 313 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 A0A1B0GTQ1 180 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 ZCWPW2A0A1B0GU75 182 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 FAM25AB3EWG3 89 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 FAM25CB3EWG5 89 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 FAM25GB3EWG6 89 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 C16orf97H3BN30 126 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 CACNG3O60359 315 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 THRAP10827 490 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 FGF3P11487 239 aaPredicted RBP3.87□□□□□ -1.79
USH2A-202ENST00000366942 MIPP30301 263 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 MAP3K8P41279 467 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 XKP51811 444 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 DRG2P55039 364 aaKnown RBP3.87□□□□□ -1.79
USH2A-202ENST00000366942 BIDP55957 195 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 TOP3AQ13472 1001 aaPredicted RBP3.87□□□□□ -1.79
USH2A-202ENST00000366942 PTCHD3Q3KNS1 767 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 AGKQ53H12 422 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 PIGGQ5H8A4 983 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 PMS2CLQ68D20 193 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 FBXL22Q6P050 247 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 WDR59Q6PJI9 974 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 FRRS1Q6ZNA5 592 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 C3orf62Q6ZUJ4 267 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 POLNQ7Z5Q5 900 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 GALNT11Q8NCW6 608 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 ZNF740Q8NDX6 193 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 OR51G2Q8NGK0 314 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 OR4C13Q8NGP0 309 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 SH3YL1Q96HL8 342 aaPredicted RBP3.87□□□□□ -1.79
USH2A-202ENST00000366942 ZSWIM1Q9BR11 485 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 HDAC8Q9BY41 377 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 KLHL31Q9H511 634 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 P2RX2Q9UBL9 471 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 HAO1Q9UJM8 370 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 AMDHD2Q9Y303 409 aa3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms