RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 OR5D16Q8NGK9 328 aa21.21■□□□□ 0.99
CDX1-201ENST00000231656 MOAP1Q96BY2 351 aa21.21■□□□□ 0.99
CDX1-201ENST00000231656 DGCR14Q96DF8 476 aaKnown RBP21.21■□□□□ 0.99
CDX1-201ENST00000231656 IRF2BPLQ9H1B7 796 aa21.21■□□□□ 0.99
CDX1-201ENST00000231656 P2RX2Q9UBL9 471 aa21.21■□□□□ 0.99
CDX1-201ENST00000231656 SLC22A7Q9Y694 548 aa21.21■□□□□ 0.99
CDX1-201ENST00000231656 ENPP4Q9Y6X5 453 aa21.21■□□□□ 0.99
CDX1-201ENST00000231656 IGHV5-10-1A0A0J9YXX1 117 aa21.2■□□□□ 0.99
CDX1-201ENST00000231656 TNFRSF11BO00300 401 aa21.2■□□□□ 0.99
CDX1-201ENST00000231656 BCKDKO14874 412 aa21.2■□□□□ 0.99
CDX1-201ENST00000231656 PDE9AO76083 593 aa21.2■□□□□ 0.99
CDX1-201ENST00000231656 YAP1P46937 504 aaKnown RBP21.2■□□□□ 0.99
CDX1-201ENST00000231656 HLCSP50747 726 aa21.2■□□□□ 0.99
CDX1-201ENST00000231656 ISL1P61371 349 aa21.2■□□□□ 0.99
CDX1-201ENST00000231656 CD47Q08722 323 aa21.2■□□□□ 0.99
CDX1-201ENST00000231656 CTU2Q2VPK5 515 aaKnown RBP21.2■□□□□ 0.99
CDX1-201ENST00000231656 TCTE1Q5JU00 501 aa21.2■□□□□ 0.99
CDX1-201ENST00000231656 TMEM107Q6UX40 140 aa21.2■□□□□ 0.99
CDX1-201ENST00000231656 ARHGAP22Q7Z5H3 698 aa21.2■□□□□ 0.99
CDX1-201ENST00000231656 NAXDQ8IW45 347 aa21.2■□□□□ 0.99
CDX1-201ENST00000231656 GPR32P1Q8NGA4 272 aa21.2■□□□□ 0.99
CDX1-201ENST00000231656 OR56A1Q8NGH5 318 aa21.2■□□□□ 0.99
CDX1-201ENST00000231656 FBLIM1Q8WUP2 373 aa21.2■□□□□ 0.99
CDX1-201ENST00000231656 HDAC2Q92769 488 aaKnown RBP21.2■□□□□ 0.99
CDX1-201ENST00000231656 MAGED4Q96JG8 741 aa21.2■□□□□ 0.99
CDX1-201ENST00000231656 GFM1Q96RP9 751 aaKnown RBP21.2■□□□□ 0.99
CDX1-201ENST00000231656 EXD2Q9NVH0 621 aa21.2■□□□□ 0.99
CDX1-201ENST00000231656 SH3GLB1Q9Y371 365 aa21.2■□□□□ 0.99
CDX1-201ENST00000231656 ZNF780BQ9Y6R6 833 aa21.2■□□□□ 0.99
CDX1-201ENST00000231656 NTN3O00634 580 aaPredicted RBP21.2■□□□□ 0.98
CDX1-201ENST00000231656 SLC28A2O43868 658 aa21.2■□□□□ 0.98
CDX1-201ENST00000231656 DNAJB6O75190 326 aa21.2■□□□□ 0.98
CDX1-201ENST00000231656 UGT2B11O75310 529 aa21.2■□□□□ 0.98
CDX1-201ENST00000231656 GP1BAP07359 652 aa21.2■□□□□ 0.98
CDX1-201ENST00000231656 FHP07954 510 aa21.2■□□□□ 0.98
CDX1-201ENST00000231656 ANKRD34CP0C6C1 535 aa21.2■□□□□ 0.98
CDX1-201ENST00000231656 MPIP34949 423 aa21.2■□□□□ 0.98
CDX1-201ENST00000231656 CLK3P49761 638 aaKnown RBP21.2■□□□□ 0.98
CDX1-201ENST00000231656 TPD52P55327 224 aaPredicted RBP21.2■□□□□ 0.98
CDX1-201ENST00000231656 LIM2P55344 173 aa21.2■□□□□ 0.98
CDX1-201ENST00000231656 PUM1Q14671 1186 aaKnown RBP eCLIP21.2■□□□□ 0.98
CDX1-201ENST00000231656 SYPL1Q16563 259 aa21.2■□□□□ 0.98
CDX1-201ENST00000231656 CLPPQ16740 277 aaPredicted RBP21.2■□□□□ 0.98
CDX1-201ENST00000231656 RBM48Q5RL73 367 aaKnown RBP21.2■□□□□ 0.98
CDX1-201ENST00000231656 LAIR2Q6ISS4 152 aa21.2■□□□□ 0.98
CDX1-201ENST00000231656 BHLHB9Q6PI77 547 aa21.2■□□□□ 0.98
CDX1-201ENST00000231656 PRSS41Q7RTY9 318 aa21.2■□□□□ 0.98
CDX1-201ENST00000231656 ZNF605Q86T29 641 aa21.2■□□□□ 0.98
CDX1-201ENST00000231656 ATG16L2Q8NAA4 619 aa21.2■□□□□ 0.98
CDX1-201ENST00000231656 MIPOL1Q8TD10 442 aa21.2■□□□□ 0.98
CDX1-201ENST00000231656 RIBC2Q9H4K1 309 aa21.2■□□□□ 0.98
CDX1-201ENST00000231656 KRT84Q9NSB2 600 aa21.2■□□□□ 0.98
CDX1-201ENST00000231656 KIF17Q9P2E2 1029 aa21.2■□□□□ 0.98
CDX1-201ENST00000231656 TRPC4Q9UBN4 977 aa21.2■□□□□ 0.98
CDX1-201ENST00000231656 PSME2Q9UL46 239 aa21.2■□□□□ 0.98
CDX1-201ENST00000231656 E9PQ18 207 aa21.19■□□□□ 0.98
CDX1-201ENST00000231656 B3GALT2O43825 422 aa21.19■□□□□ 0.98
CDX1-201ENST00000231656 FOLR1P15328 257 aa21.19■□□□□ 0.98
CDX1-201ENST00000231656 IL7RP16871 459 aa21.19■□□□□ 0.98
CDX1-201ENST00000231656 ZNF10P21506 573 aaPredicted RBP21.19■□□□□ 0.98
CDX1-201ENST00000231656 CPN2P22792 545 aa21.19■□□□□ 0.98
CDX1-201ENST00000231656 RYKP34925 604 aa21.19■□□□□ 0.98
CDX1-201ENST00000231656 BUD31P41223 144 aaPredicted RBP21.19■□□□□ 0.98
CDX1-201ENST00000231656 SPIBQ01892 262 aa21.19■□□□□ 0.98
CDX1-201ENST00000231656 KCNC4Q03721 635 aa21.19■□□□□ 0.98
CDX1-201ENST00000231656 KEAP1Q14145 624 aa21.19■□□□□ 0.98
CDX1-201ENST00000231656 OR9A2Q8NGT5 310 aa21.19■□□□□ 0.98
CDX1-201ENST00000231656 GIPC3Q8TF64 312 aa21.19■□□□□ 0.98
CDX1-201ENST00000231656 TMIGD2Q96BF3 282 aa21.19■□□□□ 0.98
CDX1-201ENST00000231656 TSC22D3Q99576 134 aa21.19■□□□□ 0.98
CDX1-201ENST00000231656 PIP5K1AQ99755 562 aa21.19■□□□□ 0.98
CDX1-201ENST00000231656 TREX2Q9BQ50 279 aaPredicted RBP21.19■□□□□ 0.98
CDX1-201ENST00000231656 DDX18Q9NVP1 670 aaKnown RBP21.19■□□□□ 0.98
CDX1-201ENST00000231656 IRAK4Q9NWZ3 460 aa21.19■□□□□ 0.98
CDX1-201ENST00000231656 DAPP1Q9UN19 280 aa21.19■□□□□ 0.98
CDX1-201ENST00000231656 C4orf47A7E2U8 309 aa21.18■□□□□ 0.98
CDX1-201ENST00000231656 TMEM150CB9EJG8 249 aa21.18■□□□□ 0.98
CDX1-201ENST00000231656 H3BMH7 237 aa21.18■□□□□ 0.98
CDX1-201ENST00000231656 J3KTA2 159 aa21.18■□□□□ 0.98
CDX1-201ENST00000231656 EMC8O43402 210 aa21.18■□□□□ 0.98
CDX1-201ENST00000231656 MSL3P1P0C860 447 aa21.18■□□□□ 0.98
CDX1-201ENST00000231656 CDH2P19022 906 aaPredicted RBP21.18■□□□□ 0.98
CDX1-201ENST00000231656 TGM1P22735 817 aa21.18■□□□□ 0.98
CDX1-201ENST00000231656 PRKAG1P54619 331 aa21.18■□□□□ 0.98
CDX1-201ENST00000231656 MEP1AQ16819 746 aa21.18■□□□□ 0.98
CDX1-201ENST00000231656 C6orf141Q5SZD1 244 aa21.18■□□□□ 0.98
CDX1-201ENST00000231656 RCBTB1Q8NDN9 531 aa21.18■□□□□ 0.98
CDX1-201ENST00000231656 XAGE5Q8WWM1 108 aa21.18■□□□□ 0.98
CDX1-201ENST00000231656 ELP4Q96EB1 424 aa21.18■□□□□ 0.98
CDX1-201ENST00000231656 CCDC74BQ96LY2 380 aa21.18■□□□□ 0.98
CDX1-201ENST00000231656 CSF3RQ99062 836 aa21.18■□□□□ 0.98
CDX1-201ENST00000231656 SPRTNQ9H040 489 aaPredicted RBP21.18■□□□□ 0.98
CDX1-201ENST00000231656 PRDM9Q9NQV7 894 aa21.18■□□□□ 0.98
CDX1-201ENST00000231656 NAALAD2Q9Y3Q0 740 aa21.18■□□□□ 0.98
CDX1-201ENST00000231656 HCN4Q9Y3Q4 1203 aa21.18■□□□□ 0.98
CDX1-201ENST00000231656 GPC6Q9Y625 555 aaPredicted RBP21.18■□□□□ 0.98
CDX1-201ENST00000231656 CEPT1Q9Y6K0 416 aa21.18■□□□□ 0.98
CDX1-201ENST00000231656 NINQ8N4C6 2090 aa21.18■□□□□ 0.98
CDX1-201ENST00000231656 TMEM247A6NEH6 219 aa21.18■□□□□ 0.98
CDX1-201ENST00000231656 D6RAR5 112 aa21.18■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms