RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 ZNF248Q8NDW4 579 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 BBS4Q96RK4 519 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 SPATA5L1Q9BVQ7 753 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 PRRG4Q9BZD6 226 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 ZBTB20Q9HC78 741 aaPredicted RBP5.06□□□□□ -1.6
SYNE1-220ENST00000471834 ACSS1Q9NUB1 689 aaPredicted RBP5.06□□□□□ -1.6
SYNE1-220ENST00000471834 ALKBH4Q9NXW9 302 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 NUFIP1Q9UHK0 495 aaKnown RBP5.06□□□□□ -1.6
SYNE1-220ENST00000471834 BTN3A3O00478 584 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 FGF16O43320 207 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 EIF4E2O60573 245 aaKnown RBP5.06□□□□□ -1.6
SYNE1-220ENST00000471834 PTP4A3O75365 173 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 PCCBP05166 539 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 NPR2P20594 1047 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 MAPK12P53778 367 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 RAE1P78406 368 aaKnown RBP5.06□□□□□ -1.6
SYNE1-220ENST00000471834 HOXC5Q00444 222 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 TAP2Q03519 686 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 SF1Q15637 639 aaKnown RBP5.06□□□□□ -1.6
SYNE1-220ENST00000471834 HFEQ30201 348 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 IFI44LQ53G44 452 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 HENMT1Q5T8I9 393 aaKnown RBP5.06□□□□□ -1.6
SYNE1-220ENST00000471834 WDR53Q7Z5U6 358 aaPredicted RBP5.06□□□□□ -1.6
SYNE1-220ENST00000471834 RASAL3Q86YV0 1011 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 SPNS2Q8IVW8 549 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 KREMEN2Q8NCW0 462 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 HUS1BQ8NHY5 278 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 PIGKQ92643 395 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 UBE2FQ969M7 185 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 EDEM2Q9BV94 578 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 ABCG5Q9H222 651 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 RLIMQ9NVW2 624 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 GIMAP1-GIMAP5A0A087WTJ2 511 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 TPD52L2O43399 206 aaKnown RBP5.06□□□□□ -1.6
SYNE1-220ENST00000471834 PRAMEF12O95522 483 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 F7P08709 466 aaPredicted RBP5.06□□□□□ -1.6
SYNE1-220ENST00000471834 CNPP09543 421 aaKnown RBP5.06□□□□□ -1.6
SYNE1-220ENST00000471834 ZNF250P15622 560 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 KELP23276 732 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 DGKEP52429 567 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 CRISP3P54108 245 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 CDH4P55283 916 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 UCP2P55851 309 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 ZP1P60852 638 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 LSM3P62310 102 aaKnown RBP5.06□□□□□ -1.6
SYNE1-220ENST00000471834 CASP12Q6UXS9 341 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 ZER1Q7Z7L7 766 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 METTL3Q86U44 580 aaKnown RBP5.06□□□□□ -1.6
SYNE1-220ENST00000471834 MCEMP1Q8IX19 187 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 SYS1Q8N2H4 156 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 WDR36Q8NI36 951 aaKnown RBP5.06□□□□□ -1.6
SYNE1-220ENST00000471834 GIMAP5Q96F15 307 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 ACKR4Q9NPB9 350 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 IL26Q9NPH9 171 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 INPP5EQ9NRR6 644 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 FFAR3O14843 346 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 GPR42O15529 346 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 CCL5P13501 91 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 COX7A2P14406 83 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 PRKAR1BP31321 381 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 AGTR2P50052 363 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 MRPS10P82664 201 aaKnown RBP5.06□□□□□ -1.6
SYNE1-220ENST00000471834 KLHL22Q53GT1 634 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 PLEKHS1Q5SXH7 462 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 LYPLAL1Q5VWZ2 237 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 AHSA2Q719I0 299 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 KRT78Q8N1N4 520 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 NAT16Q8N8M0 369 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 OR4F15Q8NGB8 312 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 EEF1AKMT1Q8WVE0 214 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 REEP1Q9H902 201 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 ANKRA2Q9H9E1 313 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 ABCB10Q9NRK6 738 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 GULP1Q9UBP9 304 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 HCN2Q9UL51 889 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 OTOFQ9HC10 1997 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 LOC100506127A0A0U1RQW1 187 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 TMEM82A0PJX8 343 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 OR6C75A6NL08 312 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 B4GALT3O60512 393 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 PEX10O60683 326 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 GPR37L1O60883 481 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 ENTPD6O75354 484 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 OR2B3O76000 313 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 UBL3O95164 117 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 TSPAN19P0C672 248 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 HLA-EP13747 358 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 HOXC12P31275 282 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 RNF144AP50876 292 aaPredicted RBP5.06□□□□□ -1.6
SYNE1-220ENST00000471834 WNT4P56705 351 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 GTF2H2Q13888 395 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 GTF2H2CQ6P1K8 395 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 Q6ZNB5 142 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 RASSF6Q6ZTQ3 369 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 NUP54Q7Z3B4 507 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 KRT77Q7Z794 578 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 TLK2Q86UE8 772 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 DCAF4L2Q8NA75 395 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 FAM46DQ8NEK8 389 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 OR10G2Q8NGC3 310 aa5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 82.1 ms