RNA–Protein interactions for RNA: ENST00000518743.1

HMGB1P23-201, Transcript of high mobility group box 1 pseudogene 23, humanhuman

BASIC

Gene HMGB1P23, Length 568 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P23-201ENST00000518743 JRKLQ9Y4A0 524 aa4.31□□□□□ -1.72
HMGB1P23-201ENST00000518743 VPS13CQ709C8 3753 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 SMIM30A4D0T7 59 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 WASH3PC4AMC7 463 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 NPIPA3F8WFD2 350 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 PLOD2O00469 737 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 RNF113AO15541 343 aaKnown RBP4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 KRT86O43790 486 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 DUX1O43812 170 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 SCO2O43819 266 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 ATP6AP2O75787 350 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 CLDN14O95500 239 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 ALPPP05187 535 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 KRT19P08727 400 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 KRT3P12035 628 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 TNFRSF1BP20333 461 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 PSMB4P28070 264 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 CD86P42081 329 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 SERPINH1P50454 418 aaKnown RBP4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 ZNF131P52739 623 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 CLDN15P56746 228 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 ABATP80404 500 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 EGR4Q05215 589 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 CETN1Q12798 172 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 EIF3IQ13347 325 aaKnown RBP4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 ZNF177Q13360 481 aaPredicted RBP4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 TAF13Q15543 124 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 UBE2SQ16763 222 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 UGP2Q16851 508 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 CTU2Q2VPK5 515 aaKnown RBP4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 PDLIM3Q53GG5 364 aaPredicted RBP4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 OR7E24Q6IFN5 339 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 NEK5Q6P3R8 708 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 RBM43Q6ZSC3 357 aaKnown RBP4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 EFL1Q7Z2Z2 1120 aaKnown RBP4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 GPR141Q7Z602 305 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 NLRP14Q86W24 1093 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 HSCBQ8IWL3 235 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 BATF2Q8N1L9 274 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 PRR26Q8N8Z3 221 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 RNF149Q8NC42 400 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 NPEPL1Q8NDH3 523 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 OR4C6Q8NH72 309 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 GANCQ8TET4 914 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 DDB2Q92466 427 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 KIAA1143Q96AT1 154 aaPredicted RBP4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 OXNAD1Q96HP4 312 aaPredicted RBP4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 C18orf12Q96KH6 178 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 FAM111AQ96PZ2 611 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 KCNK16Q96T55 309 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 PKP2Q99959 881 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 TRIM7Q9C029 511 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 KRT23Q9C075 422 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 TSPYL1Q9H0U9 437 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 UBQLN3Q9H347 655 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 MAGEF1Q9HAY2 307 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 MCCC2Q9HCC0 563 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 Q9N2K0 584 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 POLE3Q9NRF9 147 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 PNPLA3Q9NST1 481 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 DNAJC11Q9NVH1 559 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 FAM118AQ9NWS6 357 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 ACTR3BQ9P1U1 418 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 TMCC3Q9ULS5 477 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 DLGAP4Q9Y2H0 992 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 KLF2Q9Y5W3 355 aaPredicted RBP4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 FER1L5A0AVI2 2057 aa4.3□□□□□ -1.72
HMGB1P23-201ENST00000518743 IGLV5-52A0A0A0MRZ9 124 aa4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 A0A1W2PN81 502 aa4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 TMEM150BA6NC51 233 aa4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 SLC9A3R1O14745 358 aaPredicted RBP4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 RASGRF2O14827 1237 aa4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 ARPC2O15144 300 aa4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 VEGFDO43915 354 aa4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 LETM1O95202 739 aaPredicted RBP4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 GSRP00390 522 aa4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 LIPFP07098 398 aa4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 ABHD2P08910 425 aa4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 SBK2P0C263 348 aa4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 PSG1P11464 419 aa4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 MYOD1P15172 320 aa4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 ZNF18P17022 549 aa4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 HPDP32754 393 aaPredicted RBP4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 SERPINB6P35237 376 aa4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 CHRNA7P36544 502 aa4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 ARCN1P48444 511 aaKnown RBP4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 HTR6P50406 440 aa4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 IST1P53990 364 aa4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 HTD2P86397 168 aa4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 ART3Q13508 389 aa4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 CEBPEQ15744 281 aa4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 ACKR1Q16570 336 aa4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 CA9Q16790 459 aa4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 UPP1Q16831 310 aa4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 HFEQ30201 348 aa4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 ZC2HC1CQ53FD0 456 aaPredicted RBP4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 DNAJC21Q5F1R6 531 aaKnown RBP4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 ATP1A1-AS1Q5TC04 95 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 85.5 ms