RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 TERF2Q15554 542 aa13.96□□□□□ -0.17
NUP54-213ENST00000513352 MPEG1Q2M385 716 aa13.96□□□□□ -0.17
NUP54-213ENST00000513352 DPY19L1Q2PZI1 675 aa13.96□□□□□ -0.17
NUP54-213ENST00000513352 METTL21CQ5VZV1 264 aa13.96□□□□□ -0.17
NUP54-213ENST00000513352 PLAG1Q6DJT9 500 aa13.96□□□□□ -0.17
NUP54-213ENST00000513352 FAM111BQ6SJ93 734 aa13.96□□□□□ -0.17
NUP54-213ENST00000513352 MTERF4Q7Z6M4 381 aaKnown RBP13.96□□□□□ -0.17
NUP54-213ENST00000513352 KBTBD2Q8IY47 623 aa13.96□□□□□ -0.17
NUP54-213ENST00000513352 VWA5B2Q8N398 1253 aa13.96□□□□□ -0.17
NUP54-213ENST00000513352 AMER2Q8N7J2 671 aa13.96□□□□□ -0.17
NUP54-213ENST00000513352 GLB1L3Q8NCI6 653 aaPredicted RBP13.96□□□□□ -0.17
NUP54-213ENST00000513352 MORN4Q8NDC4 146 aa13.96□□□□□ -0.17
NUP54-213ENST00000513352 B3GNT7Q8NFL0 401 aa13.96□□□□□ -0.17
NUP54-213ENST00000513352 SUN3Q8TAQ9 357 aa13.96□□□□□ -0.17
NUP54-213ENST00000513352 TESCQ96BS2 214 aa13.96□□□□□ -0.17
NUP54-213ENST00000513352 COQ8BQ96D53 544 aa13.96□□□□□ -0.17
NUP54-213ENST00000513352 THOC3Q96J01 351 aaKnown RBP13.96□□□□□ -0.17
NUP54-213ENST00000513352 AMDHD1Q96NU7 426 aa13.96□□□□□ -0.17
NUP54-213ENST00000513352 CCT8L2Q96SF2 557 aa13.96□□□□□ -0.17
NUP54-213ENST00000513352 BHLHE41Q9C0J9 482 aaPredicted RBP13.96□□□□□ -0.17
NUP54-213ENST00000513352 GLIPR2Q9H4G4 154 aa13.96□□□□□ -0.17
NUP54-213ENST00000513352 CXorf21Q9HAI6 301 aa13.96□□□□□ -0.17
NUP54-213ENST00000513352 SLAMF7Q9NQ25 335 aa13.96□□□□□ -0.17
NUP54-213ENST00000513352 CCDC167Q9P0B6 97 aa13.96□□□□□ -0.17
NUP54-213ENST00000513352 BCAP29Q9UHQ4 241 aa13.96□□□□□ -0.17
NUP54-213ENST00000513352 A0A1W2PQ72 361 aa13.95□□□□□ -0.18
NUP54-213ENST00000513352 FAM234BA2RU67 622 aa13.95□□□□□ -0.18
NUP54-213ENST00000513352 DNAJB5O75953 348 aa13.95□□□□□ -0.18
NUP54-213ENST00000513352 C6orf47O95873 294 aa13.95□□□□□ -0.18
NUP54-213ENST00000513352 CT62P0C5K7 136 aa13.95□□□□□ -0.18
NUP54-213ENST00000513352 ITGAMP11215 1152 aa13.95□□□□□ -0.18
NUP54-213ENST00000513352 ICAM2P13598 275 aa13.95□□□□□ -0.18
NUP54-213ENST00000513352 GALNSP34059 522 aa13.95□□□□□ -0.18
NUP54-213ENST00000513352 SOAT1P35610 550 aa13.95□□□□□ -0.18
NUP54-213ENST00000513352 AP2B1P63010 937 aa13.95□□□□□ -0.18
NUP54-213ENST00000513352 IRX1P78414 480 aaPredicted RBP13.95□□□□□ -0.18
NUP54-213ENST00000513352 MRPS35P82673 323 aaKnown RBP13.95□□□□□ -0.18
NUP54-213ENST00000513352 RAPSNQ13702 412 aa13.95□□□□□ -0.18
NUP54-213ENST00000513352 SPRED3Q2MJR0 410 aa13.95□□□□□ -0.18
NUP54-213ENST00000513352 PRICKLE4Q2TBC4 344 aa13.95□□□□□ -0.18
NUP54-213ENST00000513352 TIGD2Q4W5G0 525 aa13.95□□□□□ -0.18
NUP54-213ENST00000513352 ANXA8L1Q5VT79 327 aa13.95□□□□□ -0.18
NUP54-213ENST00000513352 BORAQ6PGQ7 559 aa13.95□□□□□ -0.18
NUP54-213ENST00000513352 TMEM107Q6UX40 140 aa13.95□□□□□ -0.18
NUP54-213ENST00000513352 CAMKMTQ7Z624 323 aa13.95□□□□□ -0.18
NUP54-213ENST00000513352 ANKRD46Q86W74 232 aa13.95□□□□□ -0.18
NUP54-213ENST00000513352 NATD1Q8N6N6 113 aa13.95□□□□□ -0.18
NUP54-213ENST00000513352 ZNF321PQ8N8H1 164 aa13.95□□□□□ -0.18
NUP54-213ENST00000513352 VPS37AQ8NEZ2 397 aa13.95□□□□□ -0.18
NUP54-213ENST00000513352 M1APQ8TC57 530 aa13.95□□□□□ -0.18
NUP54-213ENST00000513352 APOBEC4Q8WW27 367 aaKnown RBP13.95□□□□□ -0.18
NUP54-213ENST00000513352 VMP1Q96GC9 406 aa13.95□□□□□ -0.18
NUP54-213ENST00000513352 SENP5Q96HI0 755 aaPredicted RBP13.95□□□□□ -0.18
NUP54-213ENST00000513352 FBXL20Q96IG2 436 aa13.95□□□□□ -0.18
NUP54-213ENST00000513352 IMMP1LQ96LU5 166 aa13.95□□□□□ -0.18
NUP54-213ENST00000513352 OR52E6Q96RD3 313 aa13.95□□□□□ -0.18
NUP54-213ENST00000513352 ACSS1Q9NUB1 689 aaPredicted RBP13.95□□□□□ -0.18
NUP54-213ENST00000513352 MAT2BQ9NZL9 334 aa13.95□□□□□ -0.18
NUP54-213ENST00000513352 PCDHGB4Q9UN71 923 aa13.95□□□□□ -0.18
NUP54-213ENST00000513352 SNX8Q9Y5X2 465 aa13.95□□□□□ -0.18
NUP54-213ENST00000513352 KCNMB2Q9Y691 235 aa13.95□□□□□ -0.18
NUP54-213ENST00000513352 NUP214P35658 2090 aaPredicted RBP13.95□□□□□ -0.18
NUP54-213ENST00000513352 CELSR3Q9NYQ7 3312 aa13.95□□□□□ -0.18
NUP54-213ENST00000513352 HRKO00198 91 aa13.94□□□□□ -0.18
NUP54-213ENST00000513352 CPSF4O95639 269 aaKnown RBP13.94□□□□□ -0.18
NUP54-213ENST00000513352 DDAH2O95865 285 aa13.94□□□□□ -0.18
NUP54-213ENST00000513352 FAM107AO95990 144 aa13.94□□□□□ -0.18
NUP54-213ENST00000513352 IL6P05231 212 aa13.94□□□□□ -0.18
NUP54-213ENST00000513352 SERPINA7P05543 415 aa13.94□□□□□ -0.18
NUP54-213ENST00000513352 SSTR4P31391 388 aa13.94□□□□□ -0.18
NUP54-213ENST00000513352 MC3RP41968 323 aa13.94□□□□□ -0.18
NUP54-213ENST00000513352 CDK9P50750 372 aaKnown RBP13.94□□□□□ -0.18
NUP54-213ENST00000513352 CLCN2P51788 898 aa13.94□□□□□ -0.18
NUP54-213ENST00000513352 Q0VFX4 171 aa13.94□□□□□ -0.18
NUP54-213ENST00000513352 UBAP2LQ14157 1087 aaKnown RBP13.94□□□□□ -0.18
NUP54-213ENST00000513352 EXOSC7Q15024 291 aaKnown RBP13.94□□□□□ -0.18
NUP54-213ENST00000513352 CEBPEQ15744 281 aa13.94□□□□□ -0.18
NUP54-213ENST00000513352 COL28A1Q2UY09 1125 aa13.94□□□□□ -0.18
NUP54-213ENST00000513352 SPDYE7PQ495Y7 208 aa13.94□□□□□ -0.18
NUP54-213ENST00000513352 RNF111Q6ZNA4 994 aa13.94□□□□□ -0.18
NUP54-213ENST00000513352 GK5Q6ZS86 529 aa13.94□□□□□ -0.18
NUP54-213ENST00000513352 GPR155Q7Z3F1 870 aa13.94□□□□□ -0.18
NUP54-213ENST00000513352 CLECL1Q8IZS7 167 aa13.94□□□□□ -0.18
NUP54-213ENST00000513352 KIF2BQ8N4N8 673 aa13.94□□□□□ -0.18
NUP54-213ENST00000513352 SIRT6Q8N6T7 355 aa13.94□□□□□ -0.18
NUP54-213ENST00000513352 NFAM1Q8NET5 270 aaPredicted RBP13.94□□□□□ -0.18
NUP54-213ENST00000513352 OR8J2Q8NGG1 315 aa13.94□□□□□ -0.18
NUP54-213ENST00000513352 OR4A15Q8NGL6 344 aa13.94□□□□□ -0.18
NUP54-213ENST00000513352 THAP3Q8WTV1 239 aaPredicted RBP13.94□□□□□ -0.18
NUP54-213ENST00000513352 DOCK10Q96BY6 2186 aa13.94□□□□□ -0.18
NUP54-213ENST00000513352 NUDT9Q9BW91 350 aa13.94□□□□□ -0.18
NUP54-213ENST00000513352 ANKRA2Q9H9E1 313 aa13.94□□□□□ -0.18
NUP54-213ENST00000513352 DDX18Q9NVP1 670 aaKnown RBP13.94□□□□□ -0.18
NUP54-213ENST00000513352 FAM120CQ9NX05 1096 aaKnown RBP13.94□□□□□ -0.18
NUP54-213ENST00000513352 ARL2BPQ9Y2Y0 163 aa13.94□□□□□ -0.18
NUP54-213ENST00000513352 CCDC154A6NI56 674 aa13.93□□□□□ -0.18
NUP54-213ENST00000513352 A8MUI8 341 aa13.93□□□□□ -0.18
NUP54-213ENST00000513352 RNASET2O00584 256 aaKnown RBP13.93□□□□□ -0.18
NUP54-213ENST00000513352 FCHO1O14526 889 aa13.93□□□□□ -0.18
NUP54-213ENST00000513352 CCDC22O60826 627 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms