RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 BCL11BQ9C0K0 894 aaPredicted RBP16.14■□□□□ 0.18
VPS4A-204ENST00000566354 OSBPL3Q9H4L5 887 aa16.14■□□□□ 0.18
VPS4A-204ENST00000566354 LMBRD1Q9NUN5 540 aa16.14■□□□□ 0.18
VPS4A-204ENST00000566354 AK9Q5TCS8 1911 aa16.14■□□□□ 0.17
VPS4A-204ENST00000566354 SLC4A2P04920 1241 aa16.14■□□□□ 0.17
VPS4A-204ENST00000566354 MEX3CQ5U5Q3 659 aaKnown RBP16.14■□□□□ 0.17
VPS4A-204ENST00000566354 APBB1O00213 710 aa16.13■□□□□ 0.17
VPS4A-204ENST00000566354 EIF4A1P60842 406 aaKnown RBP16.13■□□□□ 0.17
VPS4A-204ENST00000566354 USP21Q9UK80 565 aa16.13■□□□□ 0.17
VPS4A-204ENST00000566354 CCT4P50991 539 aaKnown RBP16.12■□□□□ 0.17
VPS4A-204ENST00000566354 SLC39A6Q13433 755 aa16.12■□□□□ 0.17
VPS4A-204ENST00000566354 NKX1-1Q15270 411 aaPredicted RBP16.12■□□□□ 0.17
VPS4A-204ENST00000566354 THRAP3Q9Y2W1 955 aaKnown RBP16.12■□□□□ 0.17
VPS4A-204ENST00000566354 MRC1P22897 1456 aa16.12■□□□□ 0.17
VPS4A-204ENST00000566354 KAT6BQ8WYB5 2073 aa16.11■□□□□ 0.17
VPS4A-204ENST00000566354 EXOC5O00471 708 aa16.11■□□□□ 0.17
VPS4A-204ENST00000566354 VPS72Q15906 364 aa16.11■□□□□ 0.17
VPS4A-204ENST00000566354 PDE1AP54750 535 aa16.11■□□□□ 0.17
VPS4A-204ENST00000566354 CABP4P57796 275 aa16.11■□□□□ 0.17
VPS4A-204ENST00000566354 PKP1Q13835 747 aa16.11■□□□□ 0.17
VPS4A-204ENST00000566354 ZSCAN23Q3MJ62 389 aa16.11■□□□□ 0.17
VPS4A-204ENST00000566354 CAVIN1Q6NZI2 390 aaKnown RBP16.11■□□□□ 0.17
VPS4A-204ENST00000566354 NCLP19338 710 aaKnown RBP16.1■□□□□ 0.17
VPS4A-204ENST00000566354 ZSCAN30Q86W11 494 aa16.1■□□□□ 0.17
VPS4A-204ENST00000566354 NECTIN2Q92692 538 aa16.1■□□□□ 0.17
VPS4A-204ENST00000566354 TOGARAM1Q9Y4F4 1720 aa16.1■□□□□ 0.17
VPS4A-204ENST00000566354 FAM98CQ17RN3 349 aaKnown RBP16.1■□□□□ 0.17
VPS4A-204ENST00000566354 ZGPATQ8N5A5 531 aaKnown RBP16.1■□□□□ 0.17
VPS4A-204ENST00000566354 TNS2Q63HR2 1409 aa16.09■□□□□ 0.17
VPS4A-204ENST00000566354 ZNF790Q6PG37 636 aa16.09■□□□□ 0.17
VPS4A-204ENST00000566354 BARGINQ6ZT62 677 aa16.09■□□□□ 0.17
VPS4A-204ENST00000566354 CDCA7Q9BWT1 371 aaPredicted RBP16.09■□□□□ 0.17
VPS4A-204ENST00000566354 AFF2P51816 1311 aa16.09■□□□□ 0.17
VPS4A-204ENST00000566354 A0A0U1RQG5 324 aaPredicted RBP16.08■□□□□ 0.17
VPS4A-204ENST00000566354 MCM2P49736 904 aa16.08■□□□□ 0.17
VPS4A-204ENST00000566354 DDB1Q16531 1140 aa16.08■□□□□ 0.17
VPS4A-204ENST00000566354 HS1BP3Q53T59 392 aa16.08■□□□□ 0.17
VPS4A-204ENST00000566354 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.08■□□□□ 0.16
VPS4A-204ENST00000566354 PRPF40AO75400 957 aaKnown RBP16.08■□□□□ 0.16
VPS4A-204ENST00000566354 GNAI2P04899 355 aa16.08■□□□□ 0.16
VPS4A-204ENST00000566354 SLC4A10Q6U841 1118 aa16.08■□□□□ 0.16
VPS4A-204ENST00000566354 ZDHHC9Q9Y397 364 aa16.08■□□□□ 0.16
VPS4A-204ENST00000566354 PRAMEF22A3QJZ6 481 aa16.07■□□□□ 0.16
VPS4A-204ENST00000566354 ERVV-2B6SEH9 535 aa16.07■□□□□ 0.16
VPS4A-204ENST00000566354 HEG1Q9ULI3 1381 aa16.06■□□□□ 0.16
VPS4A-204ENST00000566354 EIF2S2P20042 333 aaKnown RBP16.06■□□□□ 0.16
VPS4A-204ENST00000566354 G2E3Q7L622 706 aa16.06■□□□□ 0.16
VPS4A-204ENST00000566354 F6X3S4 739 aa16.06■□□□□ 0.16
VPS4A-204ENST00000566354 GIGYF1O75420 1035 aaPredicted RBP16.06■□□□□ 0.16
VPS4A-204ENST00000566354 NEK4P51957 841 aa16.06■□□□□ 0.16
VPS4A-204ENST00000566354 HDGFL1Q5TGJ6 251 aa16.06■□□□□ 0.16
VPS4A-204ENST00000566354 ZNF496Q96IT1 587 aaPredicted RBP16.06■□□□□ 0.16
VPS4A-204ENST00000566354 TPM2P07951 284 aa16.05■□□□□ 0.16
VPS4A-204ENST00000566354 GPT2Q8TD30 523 aa16.05■□□□□ 0.16
VPS4A-204ENST00000566354 STK31Q9BXU1 1019 aa16.05■□□□□ 0.16
VPS4A-204ENST00000566354 SALL3Q9BXA9 1300 aa16.05■□□□□ 0.16
VPS4A-204ENST00000566354 GNAI3P08754 354 aa16.05■□□□□ 0.16
VPS4A-204ENST00000566354 MCCP23508 829 aa16.05■□□□□ 0.16
VPS4A-204ENST00000566354 MSNP26038 577 aaKnown RBP16.05■□□□□ 0.16
VPS4A-204ENST00000566354 ANAPC15P60006 121 aa16.05■□□□□ 0.16
VPS4A-204ENST00000566354 CCDC30Q5VVM6 783 aa16.05■□□□□ 0.16
VPS4A-204ENST00000566354 MARCH10Q8NA82 808 aaPredicted RBP16.05■□□□□ 0.16
VPS4A-204ENST00000566354 TMX3Q96JJ7 454 aa16.05■□□□□ 0.16
VPS4A-204ENST00000566354 ESYT1Q9BSJ8 1104 aa16.05■□□□□ 0.16
VPS4A-204ENST00000566354 LRRCC1Q9C099 1032 aa16.05■□□□□ 0.16
VPS4A-204ENST00000566354 ITGB4P16144 1822 aa16.05■□□□□ 0.16
VPS4A-204ENST00000566354 SOS1Q07889 1333 aaPredicted RBP16.04■□□□□ 0.16
VPS4A-204ENST00000566354 HSP90AA2PQ14568 343 aaPredicted RBP16.04■□□□□ 0.16
VPS4A-204ENST00000566354 TTC5Q8N0Z6 440 aa16.04■□□□□ 0.16
VPS4A-204ENST00000566354 RBSNQ9H1K0 784 aa16.04■□□□□ 0.16
VPS4A-204ENST00000566354 PRIM1P49642 420 aaKnown RBP16.03■□□□□ 0.16
VPS4A-204ENST00000566354 PDLIM2Q96JY6 352 aa16.03■□□□□ 0.16
VPS4A-204ENST00000566354 EXOC6BQ9Y2D4 811 aa16.03■□□□□ 0.16
VPS4A-204ENST00000566354 GLI3P10071 1580 aa16.03■□□□□ 0.16
VPS4A-204ENST00000566354 A0A0G2JS52 829 aa16.03■□□□□ 0.16
VPS4A-204ENST00000566354 MBD3O95983 291 aa16.03■□□□□ 0.16
VPS4A-204ENST00000566354 HOXB7P09629 217 aa16.03■□□□□ 0.16
VPS4A-204ENST00000566354 MX1P20591 662 aa16.03■□□□□ 0.16
VPS4A-204ENST00000566354 TMOD3Q9NYL9 352 aa16.03■□□□□ 0.16
VPS4A-204ENST00000566354 C5P01031 1676 aa16.03■□□□□ 0.16
VPS4A-204ENST00000566354 CUL4AQ13619 759 aa16.02■□□□□ 0.16
VPS4A-204ENST00000566354 PIGBQ92521 554 aa16.02■□□□□ 0.16
VPS4A-204ENST00000566354 INTS4Q96HW7 963 aaKnown RBP16.02■□□□□ 0.16
VPS4A-204ENST00000566354 GJD4Q96KN9 370 aaPredicted RBP16.02■□□□□ 0.16
VPS4A-204ENST00000566354 SRCIN1Q9C0H9 1055 aa16.02■□□□□ 0.16
VPS4A-204ENST00000566354 CACNA1FO60840 1977 aa16.02■□□□□ 0.16
VPS4A-204ENST00000566354 OFD1O75665 1012 aa16.02■□□□□ 0.15
VPS4A-204ENST00000566354 ATP8B2P98198 1209 aa16.02■□□□□ 0.15
VPS4A-204ENST00000566354 LRSAM1Q6UWE0 723 aa16.02■□□□□ 0.15
VPS4A-204ENST00000566354 DOT1LQ8TEK3 1739 aa16.01■□□□□ 0.15
VPS4A-204ENST00000566354 BRD1O95696 1058 aa16.01■□□□□ 0.15
VPS4A-204ENST00000566354 ANXA1P04083 346 aa16.01■□□□□ 0.15
VPS4A-204ENST00000566354 SYTL4Q96C24 671 aaPredicted RBP16.01■□□□□ 0.15
VPS4A-204ENST00000566354 CHPF2Q9P2E5 772 aa16.01■□□□□ 0.15
VPS4A-204ENST00000566354 STAP2Q9UGK3 403 aa16.01■□□□□ 0.15
VPS4A-204ENST00000566354 PAPPAQ13219 1627 aa16.01■□□□□ 0.15
VPS4A-204ENST00000566354 CHMLP26374 656 aa16.01■□□□□ 0.15
VPS4A-204ENST00000566354 IL17RAQ96F46 866 aa16.01■□□□□ 0.15
VPS4A-204ENST00000566354 FMNL2Q96PY5 1086 aa16.01■□□□□ 0.15
VPS4A-204ENST00000566354 NOL7Q9UMY1 257 aaKnown RBP16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms