RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 TULP2O00295 520 aa10.45□□□□□ -0.74
VPS13D-212ENST00000543766 MCM4P33991 863 aa10.45□□□□□ -0.74
VPS13D-212ENST00000543766 PSMC1P62191 440 aaKnown RBP10.45□□□□□ -0.74
VPS13D-212ENST00000543766 GPS2Q13227 327 aa10.45□□□□□ -0.74
VPS13D-212ENST00000543766 FXNQ16595 210 aa10.45□□□□□ -0.74
VPS13D-212ENST00000543766 MAP9Q49MG5 647 aa10.45□□□□□ -0.74
VPS13D-212ENST00000543766 HOOK3Q86VS8 718 aa10.45□□□□□ -0.74
VPS13D-212ENST00000543766 MRRFQ96E11 262 aaKnown RBP10.45□□□□□ -0.74
VPS13D-212ENST00000543766 REREQ9P2R6 1566 aa10.45□□□□□ -0.74
VPS13D-212ENST00000543766 CCDC194A0A1B0GVG4 234 aa10.45□□□□□ -0.74
VPS13D-212ENST00000543766 NOM1Q5C9Z4 860 aaKnown RBP10.45□□□□□ -0.74
VPS13D-212ENST00000543766 PPP1R9BQ96SB3 815 aa10.45□□□□□ -0.74
VPS13D-212ENST00000543766 MTRQ99707 1265 aa10.45□□□□□ -0.74
VPS13D-212ENST00000543766 SLKQ9H2G2 1235 aaPredicted RBP10.45□□□□□ -0.74
VPS13D-212ENST00000543766 SYNPO2Q9UMS6 1093 aa10.45□□□□□ -0.74
VPS13D-212ENST00000543766 ABCC5O15440 1437 aa10.45□□□□□ -0.74
VPS13D-212ENST00000543766 FAM200BP0CF97 657 aa10.45□□□□□ -0.74
VPS13D-212ENST00000543766 CRACR2AQ9BSW2 395 aa10.45□□□□□ -0.74
VPS13D-212ENST00000543766 ARAP3Q8WWN8 1544 aa10.45□□□□□ -0.74
VPS13D-212ENST00000543766 SLMAPQ14BN4 828 aa10.44□□□□□ -0.74
VPS13D-212ENST00000543766 ZMYM3Q14202 1370 aa10.44□□□□□ -0.74
VPS13D-212ENST00000543766 ATICP31939 592 aa10.44□□□□□ -0.74
VPS13D-212ENST00000543766 SESN3P58005 492 aa10.44□□□□□ -0.74
VPS13D-212ENST00000543766 MCM6Q14566 821 aa10.44□□□□□ -0.74
VPS13D-212ENST00000543766 LONRF1Q17RB8 773 aa10.44□□□□□ -0.74
VPS13D-212ENST00000543766 TTC31Q49AM3 519 aaPredicted RBP10.44□□□□□ -0.74
VPS13D-212ENST00000543766 ELOA2Q8IYF1 753 aaPredicted RBP10.44□□□□□ -0.74
VPS13D-212ENST00000543766 SMCR8Q8TEV9 937 aaPredicted RBP10.44□□□□□ -0.74
VPS13D-212ENST00000543766 ATRIPQ8WXE1 791 aa10.44□□□□□ -0.74
VPS13D-212ENST00000543766 L3MBTL2Q969R5 705 aa10.44□□□□□ -0.74
VPS13D-212ENST00000543766 LZTS2Q9BRK4 669 aa10.44□□□□□ -0.74
VPS13D-212ENST00000543766 MRGBPQ9NV56 204 aa10.44□□□□□ -0.74
VPS13D-212ENST00000543766 GPATCH8Q9UKJ3 1502 aaKnown RBP10.44□□□□□ -0.74
VPS13D-212ENST00000543766 ARHGEF5Q12774 1597 aa10.44□□□□□ -0.74
VPS13D-212ENST00000543766 hCG_2014768A0A024R1R8 64 aa10.44□□□□□ -0.74
VPS13D-212ENST00000543766 GBP4Q96PP9 640 aa10.44□□□□□ -0.74
VPS13D-212ENST00000543766 RTEL1-TNFRSF6BF6WH68 1400 aa10.44□□□□□ -0.74
VPS13D-212ENST00000543766 TPP2P29144 1249 aaPredicted RBP10.43□□□□□ -0.74
VPS13D-212ENST00000543766 SWAP70Q9UH65 585 aa10.43□□□□□ -0.74
VPS13D-212ENST00000543766 N6AMT1Q9Y5N5 214 aa10.43□□□□□ -0.74
VPS13D-212ENST00000543766 NCOA3Q9Y6Q9 1424 aa10.43□□□□□ -0.74
VPS13D-212ENST00000543766 JARID2Q92833 1246 aaPredicted RBP10.43□□□□□ -0.74
VPS13D-212ENST00000543766 ANKRD30BQ9BXX2 1392 aa10.43□□□□□ -0.74
VPS13D-212ENST00000543766 PREX2Q70Z35 1606 aa10.43□□□□□ -0.74
VPS13D-212ENST00000543766 AP1G2O75843 785 aa10.43□□□□□ -0.74
VPS13D-212ENST00000543766 IRX1P78414 480 aaPredicted RBP10.43□□□□□ -0.74
VPS13D-212ENST00000543766 FEZ1Q99689 392 aa10.43□□□□□ -0.74
VPS13D-212ENST00000543766 ATG3Q9NT62 314 aa10.43□□□□□ -0.74
VPS13D-212ENST00000543766 CD151P48509 253 aa10.42□□□□□ -0.74
VPS13D-212ENST00000543766 GABPB1Q06547 395 aaPredicted RBP10.42□□□□□ -0.74
VPS13D-212ENST00000543766 PPP2R5BQ15173 497 aa10.42□□□□□ -0.74
VPS13D-212ENST00000543766 SYNE3Q6ZMZ3 975 aa10.42□□□□□ -0.74
VPS13D-212ENST00000543766 ARHGAP27Q6ZUM4 889 aa10.42□□□□□ -0.74
VPS13D-212ENST00000543766 KIAA0825Q8IV33 1275 aa10.42□□□□□ -0.74
VPS13D-212ENST00000543766 TRIM42Q8IWZ5 723 aa10.42□□□□□ -0.74
VPS13D-212ENST00000543766 TFIP11Q9UBB9 837 aaKnown RBP10.42□□□□□ -0.74
VPS13D-212ENST00000543766 MYBL2P10244 700 aa10.42□□□□□ -0.74
VPS13D-212ENST00000543766 DZIP3Q86Y13 1208 aaKnown RBP10.42□□□□□ -0.74
VPS13D-212ENST00000543766 ZC3H15Q8WU90 426 aaKnown RBP10.42□□□□□ -0.74
VPS13D-212ENST00000543766 FAM81BQ96LP2 452 aa10.42□□□□□ -0.74
VPS13D-212ENST00000543766 UNC45AQ9H3U1 944 aa10.42□□□□□ -0.74
VPS13D-212ENST00000543766 TSPY4P0CV99 314 aa10.42□□□□□ -0.74
VPS13D-212ENST00000543766 TSPY10P0CW01 314 aa10.42□□□□□ -0.74
VPS13D-212ENST00000543766 HNRNPH2P55795 449 aaKnown RBP10.42□□□□□ -0.74
VPS13D-212ENST00000543766 OGFRQ9NZT2 677 aa10.42□□□□□ -0.74
VPS13D-212ENST00000543766 KIAA1522Q9P206 1035 aaPredicted RBP10.42□□□□□ -0.74
VPS13D-212ENST00000543766 KDM5DQ9BY66 1539 aa10.41□□□□□ -0.74
VPS13D-212ENST00000543766 RBBP5Q15291 538 aaKnown RBP10.41□□□□□ -0.74
VPS13D-212ENST00000543766 RPS6KC1Q96S38 1066 aa10.41□□□□□ -0.74
VPS13D-212ENST00000543766 ARHGAP31Q2M1Z3 1444 aa10.41□□□□□ -0.74
VPS13D-212ENST00000543766 KIF15Q9NS87 1388 aa10.41□□□□□ -0.74
VPS13D-212ENST00000543766 TRIM66O15016 1216 aa10.41□□□□□ -0.74
VPS13D-212ENST00000543766 TRAF1Q13077 416 aa10.41□□□□□ -0.74
VPS13D-212ENST00000543766 MCTP2Q6DN12 878 aa10.41□□□□□ -0.74
VPS13D-212ENST00000543766 FAM117BQ6P1L5 589 aa10.41□□□□□ -0.74
VPS13D-212ENST00000543766 TRIM6Q9C030 488 aaPredicted RBP10.41□□□□□ -0.74
VPS13D-212ENST00000543766 ZHX3Q9H4I2 956 aa10.41□□□□□ -0.74
VPS13D-212ENST00000543766 CWC25Q9NXE8 425 aaPredicted RBP10.41□□□□□ -0.74
VPS13D-212ENST00000543766 CHPF2Q9P2E5 772 aa10.41□□□□□ -0.74
VPS13D-212ENST00000543766 COG6Q9Y2V7 657 aa10.41□□□□□ -0.74
VPS13D-212ENST00000543766 CCDC196A0A1B0GTZ2 297 aa10.41□□□□□ -0.74
VPS13D-212ENST00000543766 A0A1B0GUL7 405 aa10.41□□□□□ -0.74
VPS13D-212ENST00000543766 MNAT1P51948 309 aa10.41□□□□□ -0.74
VPS13D-212ENST00000543766 C20orf194Q5TEA3 1177 aa10.41□□□□□ -0.74
VPS13D-212ENST00000543766 UBE2Q1Q7Z7E8 422 aa10.41□□□□□ -0.74
VPS13D-212ENST00000543766 CDC5LQ99459 802 aaKnown RBP10.41□□□□□ -0.74
VPS13D-212ENST00000543766 SEZ6LQ9BYH1 1024 aa10.41□□□□□ -0.74
VPS13D-212ENST00000543766 SLC7A5P2Q9GIP4 190 aa10.41□□□□□ -0.74
VPS13D-212ENST00000543766 PRG4Q92954 1404 aaPredicted RBP10.41□□□□□ -0.74
VPS13D-212ENST00000543766 MYBBP1AQ9BQG0 1328 aaKnown RBP10.41□□□□□ -0.74
VPS13D-212ENST00000543766 PLEKHG3A1L390 1219 aa10.4□□□□□ -0.74
VPS13D-212ENST00000543766 TRIM64CA6NLI5 447 aa10.4□□□□□ -0.74
VPS13D-212ENST00000543766 CDKL5O76039 1030 aa10.4□□□□□ -0.74
VPS13D-212ENST00000543766 SASH1O94885 1247 aa10.4□□□□□ -0.74
VPS13D-212ENST00000543766 DDIT3P35638 169 aa10.4□□□□□ -0.74
VPS13D-212ENST00000543766 KIF11P52732 1056 aa10.4□□□□□ -0.74
VPS13D-212ENST00000543766 TSR1Q2NL82 804 aaKnown RBP10.4□□□□□ -0.74
VPS13D-212ENST00000543766 AMOTQ4VCS5 1084 aa10.4□□□□□ -0.74
VPS13D-212ENST00000543766 SUN2Q9UH99 717 aa10.4□□□□□ -0.74
VPS13D-212ENST00000543766 ATP10BO94823 1461 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms