RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 MSL1Q68DK7 614 aa10.7□□□□□ -0.7
SCN1A-207ENST00000507401 GAS2L2Q8NHY3 880 aa10.7□□□□□ -0.7
SCN1A-207ENST00000507401 GNAT3A8MTJ3 354 aa10.69□□□□□ -0.7
SCN1A-207ENST00000507401 GRIN3BO60391 1043 aa10.69□□□□□ -0.7
SCN1A-207ENST00000507401 FCHSD2O94868 740 aa10.69□□□□□ -0.7
SCN1A-207ENST00000507401 SMIM5Q71RC9 77 aa10.69□□□□□ -0.7
SCN1A-207ENST00000507401 VSIG10Q8N0Z9 540 aa10.69□□□□□ -0.7
SCN1A-207ENST00000507401 ARHGEF1Q92888 912 aaKnown RBP10.69□□□□□ -0.7
SCN1A-207ENST00000507401 BCL11AQ9H165 835 aa10.69□□□□□ -0.7
SCN1A-207ENST00000507401 ADAMTS7Q9UKP4 1686 aa10.69□□□□□ -0.7
SCN1A-207ENST00000507401 COL5A3P25940 1745 aaPredicted RBP10.68□□□□□ -0.7
SCN1A-207ENST00000507401 RFC4P35249 363 aa10.68□□□□□ -0.7
SCN1A-207ENST00000507401 EMP3P54852 163 aa10.68□□□□□ -0.7
SCN1A-207ENST00000507401 ERICH6Q7L0X2 663 aa10.68□□□□□ -0.7
SCN1A-207ENST00000507401 NLGN2Q8NFZ4 835 aa10.68□□□□□ -0.7
SCN1A-207ENST00000507401 MRC1P22897 1456 aa10.68□□□□□ -0.7
SCN1A-207ENST00000507401 UTRNP46939 3433 aa10.67□□□□□ -0.7
SCN1A-207ENST00000507401 CICQ96RK0 1608 aaPredicted RBP10.67□□□□□ -0.7
SCN1A-207ENST00000507401 CHD4Q14839 1912 aa10.67□□□□□ -0.7
SCN1A-207ENST00000507401 GTPBP6O43824 516 aaPredicted RBP10.67□□□□□ -0.7
SCN1A-207ENST00000507401 CRKLP46109 303 aaKnown RBP10.67□□□□□ -0.7
SCN1A-207ENST00000507401 GPR153Q6NV75 609 aa10.67□□□□□ -0.7
SCN1A-207ENST00000507401 IL17REQ8NFR9 667 aa10.67□□□□□ -0.7
SCN1A-207ENST00000507401 PHACTR3Q96KR7 559 aa10.67□□□□□ -0.7
SCN1A-207ENST00000507401 RSPH6AQ9H0K4 717 aa10.67□□□□□ -0.7
SCN1A-207ENST00000507401 MYH14Q7Z406 1995 aaKnown RBP10.66□□□□□ -0.7
SCN1A-207ENST00000507401 U2AF1L5P0DN76 240 aaPredicted RBP10.66□□□□□ -0.7
SCN1A-207ENST00000507401 GYS1P13807 737 aa10.66□□□□□ -0.7
SCN1A-207ENST00000507401 PRKAR2BP31323 418 aa10.66□□□□□ -0.7
SCN1A-207ENST00000507401 U2AF1Q01081 240 aaKnown RBP eCLIP10.66□□□□□ -0.7
SCN1A-207ENST00000507401 TEFQ10587 303 aa10.66□□□□□ -0.7
SCN1A-207ENST00000507401 INTS5Q6P9B9 1019 aaKnown RBP10.66□□□□□ -0.7
SCN1A-207ENST00000507401 ZNF710Q8N1W2 664 aa10.66□□□□□ -0.7
SCN1A-207ENST00000507401 TEX13AQ9BXU3 409 aaPredicted RBP10.66□□□□□ -0.7
SCN1A-207ENST00000507401 ZSWIM6Q9HCJ5 1215 aa10.66□□□□□ -0.7
SCN1A-207ENST00000507401 VIRMAQ69YN4 1812 aaKnown RBP10.65□□□□□ -0.7
SCN1A-207ENST00000507401 HTATSF1O43719 755 aaKnown RBP10.65□□□□□ -0.7
SCN1A-207ENST00000507401 MMP10P09238 476 aa10.65□□□□□ -0.7
SCN1A-207ENST00000507401 CYP19A1P11511 503 aaPredicted RBP10.65□□□□□ -0.7
SCN1A-207ENST00000507401 TGFB2P61812 414 aa10.65□□□□□ -0.7
SCN1A-207ENST00000507401 SLC39A6Q13433 755 aa10.65□□□□□ -0.7
SCN1A-207ENST00000507401 DNAJC10Q8IXB1 793 aa10.65□□□□□ -0.7
SCN1A-207ENST00000507401 RTN4Q9NQC3 1192 aaKnown RBP10.65□□□□□ -0.7
SCN1A-207ENST00000507401 CCDC87Q9NVE4 849 aa10.65□□□□□ -0.7
SCN1A-207ENST00000507401 ZNF790Q6PG37 636 aa10.64□□□□□ -0.71
SCN1A-207ENST00000507401 TTC5Q8N0Z6 440 aa10.64□□□□□ -0.71
SCN1A-207ENST00000507401 HS3ST6Q96QI5 342 aa10.64□□□□□ -0.71
SCN1A-207ENST00000507401 CEMIPQ8WUJ3 1361 aa10.64□□□□□ -0.71
SCN1A-207ENST00000507401 STARD3NLO95772 234 aa10.63□□□□□ -0.71
SCN1A-207ENST00000507401 YBX3P16989 372 aaKnown RBP eCLIP10.63□□□□□ -0.71
SCN1A-207ENST00000507401 RALBP1Q15311 655 aa10.63□□□□□ -0.71
SCN1A-207ENST00000507401 PNNQ9H307 717 aaKnown RBP10.63□□□□□ -0.71
SCN1A-207ENST00000507401 PARP3Q9Y6F1 533 aa10.63□□□□□ -0.71
SCN1A-207ENST00000507401 TJP1Q07157 1748 aa10.63□□□□□ -0.71
SCN1A-207ENST00000507401 KCPQ6ZWJ8 1503 aa10.63□□□□□ -0.71
SCN1A-207ENST00000507401 SOS1Q07889 1333 aaPredicted RBP10.62□□□□□ -0.71
SCN1A-207ENST00000507401 USP42Q9H9J4 1324 aaKnown RBP10.62□□□□□ -0.71
SCN1A-207ENST00000507401 FAM205CA6NFA0 338 aa10.62□□□□□ -0.71
SCN1A-207ENST00000507401 RIMBP2O15034 1052 aa10.62□□□□□ -0.71
SCN1A-207ENST00000507401 ZPR1O75312 459 aa10.62□□□□□ -0.71
SCN1A-207ENST00000507401 NEFMP07197 916 aa10.62□□□□□ -0.71
SCN1A-207ENST00000507401 TM4SF1P30408 202 aa10.62□□□□□ -0.71
SCN1A-207ENST00000507401 ZNF784Q8NCA9 323 aaPredicted RBP10.62□□□□□ -0.71
SCN1A-207ENST00000507401 RTF1Q92541 710 aaKnown RBP10.62□□□□□ -0.71
SCN1A-207ENST00000507401 ZNF496Q96IT1 587 aaPredicted RBP10.62□□□□□ -0.71
SCN1A-207ENST00000507401 NARFQ9UHQ1 456 aa10.62□□□□□ -0.71
SCN1A-207ENST00000507401 GOLGB1Q14789 3259 aaKnown RBP10.61□□□□□ -0.71
SCN1A-207ENST00000507401 A0A087WZG4 1122 aa10.61□□□□□ -0.71
SCN1A-207ENST00000507401 BTBD11A6QL63 1104 aa10.61□□□□□ -0.71
SCN1A-207ENST00000507401 TMC2Q8TDI7 906 aa10.61□□□□□ -0.71
SCN1A-207ENST00000507401 FMNL2Q96PY5 1086 aa10.61□□□□□ -0.71
SCN1A-207ENST00000507401 RYDENQ9NUL5 291 aaKnown RBP10.61□□□□□ -0.71
SCN1A-207ENST00000507401 UBR2Q8IWV8 1755 aa10.61□□□□□ -0.71
SCN1A-207ENST00000507401 HEG1Q9ULI3 1381 aa10.61□□□□□ -0.71
SCN1A-207ENST00000507401 KIF13BQ9NQT8 1826 aa10.61□□□□□ -0.71
SCN1A-207ENST00000507401 SIPA1L3O60292 1781 aaPredicted RBP10.6□□□□□ -0.71
SCN1A-207ENST00000507401 EIF5P55010 431 aaKnown RBP10.6□□□□□ -0.71
SCN1A-207ENST00000507401 GPHNQ9NQX3 736 aaPredicted RBP10.6□□□□□ -0.71
SCN1A-207ENST00000507401 SRP68Q9UHB9 627 aaKnown RBP10.6□□□□□ -0.71
SCN1A-207ENST00000507401 ZBTB1Q9Y2K1 713 aa10.6□□□□□ -0.71
SCN1A-207ENST00000507401 C4AP0C0L4 1744 aa10.59□□□□□ -0.71
SCN1A-207ENST00000507401 SLC34A2O95436 690 aa10.59□□□□□ -0.71
SCN1A-207ENST00000507401 IL6STP40189 918 aaPredicted RBP10.59□□□□□ -0.71
SCN1A-207ENST00000507401 TAF7Q15545 349 aaPredicted RBP10.59□□□□□ -0.71
SCN1A-207ENST00000507401 ARSIQ5FYB1 569 aa10.59□□□□□ -0.71
SCN1A-207ENST00000507401 USPL1Q5W0Q7 1092 aa10.59□□□□□ -0.71
SCN1A-207ENST00000507401 KHSRPQ92945 711 aaKnown RBP eCLIP10.59□□□□□ -0.71
SCN1A-207ENST00000507401 PLEKHF1Q96S99 279 aa10.59□□□□□ -0.71
SCN1A-207ENST00000507401 C10orf71Q711Q0 1435 aa10.58□□□□□ -0.72
SCN1A-207ENST00000507401 COL15A1P39059 1388 aa10.58□□□□□ -0.72
SCN1A-207ENST00000507401 A0A0G2JLW4 131 aa10.58□□□□□ -0.72
SCN1A-207ENST00000507401 CANXP27824 592 aaKnown RBP10.58□□□□□ -0.72
SCN1A-207ENST00000507401 FOXK1P85037 733 aa10.58□□□□□ -0.72
SCN1A-207ENST00000507401 DDR1Q08345 913 aa10.58□□□□□ -0.72
SCN1A-207ENST00000507401 DDX10Q13206 875 aaKnown RBP10.58□□□□□ -0.72
SCN1A-207ENST00000507401 MCM10Q7L590 875 aa10.58□□□□□ -0.72
SCN1A-207ENST00000507401 KRTAP3-3Q9BYR6 98 aa10.58□□□□□ -0.72
SCN1A-207ENST00000507401 KRTAP3-2Q9BYR7 98 aa10.58□□□□□ -0.72
SCN1A-207ENST00000507401 POLRMTO00411 1230 aaKnown RBP10.57□□□□□ -0.72
SCN1A-207ENST00000507401 KCNQ3O43525 872 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms