RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 ZNF232Q9UNY5 417 aa6.92□□□□□ -1.3
CPSF3-205ENST00000489629 GJA3Q9Y6H8 435 aa6.92□□□□□ -1.3
CPSF3-205ENST00000489629 NEURL1BA8MQ27 555 aa6.91□□□□□ -1.3
CPSF3-205ENST00000489629 LRRC69Q6ZNQ3 347 aa6.91□□□□□ -1.3
CPSF3-205ENST00000489629 DCAF5Q96JK2 942 aa6.91□□□□□ -1.3
CPSF3-205ENST00000489629 BTBD6Q96KE9 485 aa6.91□□□□□ -1.3
CPSF3-205ENST00000489629 MARK1Q9P0L2 795 aa6.91□□□□□ -1.3
CPSF3-205ENST00000489629 ITGB2P05107 769 aa6.9□□□□□ -1.3
CPSF3-205ENST00000489629 SEC13P55735 322 aa6.9□□□□□ -1.3
CPSF3-205ENST00000489629 PTK7Q13308 1070 aa6.9□□□□□ -1.3
CPSF3-205ENST00000489629 CRTC2Q53ET0 693 aaPredicted RBP6.9□□□□□ -1.3
CPSF3-205ENST00000489629 LINC00114Q6XXX2 140 aa6.9□□□□□ -1.3
CPSF3-205ENST00000489629 STAG2Q8N3U4 1231 aa6.9□□□□□ -1.3
CPSF3-205ENST00000489629 PHACTR1Q9C0D0 580 aa6.9□□□□□ -1.3
CPSF3-205ENST00000489629 HCN4Q9Y3Q4 1203 aa6.9□□□□□ -1.3
CPSF3-205ENST00000489629 ADH6P28332 368 aa6.89□□□□□ -1.31
CPSF3-205ENST00000489629 ZNF468Q5VIY5 522 aaPredicted RBP6.89□□□□□ -1.31
CPSF3-205ENST00000489629 FCHSD1Q86WN1 690 aa6.89□□□□□ -1.31
CPSF3-205ENST00000489629 RHPN1Q8TCX5 695 aa6.89□□□□□ -1.31
CPSF3-205ENST00000489629 C2orf49Q9BVC5 232 aaPredicted RBP6.89□□□□□ -1.31
CPSF3-205ENST00000489629 MKL2Q9ULH7 1088 aa6.89□□□□□ -1.31
CPSF3-205ENST00000489629 ATAD2Q6PL18 1390 aa6.89□□□□□ -1.31
CPSF3-205ENST00000489629 FAM196BA6NMK8 535 aa6.88□□□□□ -1.31
CPSF3-205ENST00000489629 PPP1R12BO60237 982 aaPredicted RBP6.88□□□□□ -1.31
CPSF3-205ENST00000489629 DPYDQ12882 1025 aa6.88□□□□□ -1.31
CPSF3-205ENST00000489629 GRIN2CQ14957 1233 aa6.88□□□□□ -1.31
CPSF3-205ENST00000489629 CFAP70Q5T0N1 1121 aa6.88□□□□□ -1.31
CPSF3-205ENST00000489629 LARP1Q6PKG0 1096 aaKnown RBP6.88□□□□□ -1.31
CPSF3-205ENST00000489629 GAS2L2Q8NHY3 880 aa6.88□□□□□ -1.31
CPSF3-205ENST00000489629 MDFIQ99750 246 aa6.88□□□□□ -1.31
CPSF3-205ENST00000489629 USP17L15C9J2P7 530 aa6.87□□□□□ -1.31
CPSF3-205ENST00000489629 USP17L10C9JJH3 530 aa6.87□□□□□ -1.31
CPSF3-205ENST00000489629 USP17L13C9JLJ4 530 aa6.87□□□□□ -1.31
CPSF3-205ENST00000489629 USP17L12C9JPN9 530 aa6.87□□□□□ -1.31
CPSF3-205ENST00000489629 USP17L11C9JVI0 530 aa6.87□□□□□ -1.31
CPSF3-205ENST00000489629 USP17L21D6R901 530 aa6.87□□□□□ -1.31
CPSF3-205ENST00000489629 USP17L18D6R9N7 530 aa6.87□□□□□ -1.31
CPSF3-205ENST00000489629 USP17L22D6RA61 530 aa6.87□□□□□ -1.31
CPSF3-205ENST00000489629 USP17L17D6RBQ6 530 aa6.87□□□□□ -1.31
CPSF3-205ENST00000489629 USP17L19D6RCP7 530 aa6.87□□□□□ -1.31
CPSF3-205ENST00000489629 USP17L20D6RJB6 530 aa6.87□□□□□ -1.31
CPSF3-205ENST00000489629 IGHA1P01876 353 aa6.87□□□□□ -1.31
CPSF3-205ENST00000489629 COL8A1P27658 744 aa6.87□□□□□ -1.31
CPSF3-205ENST00000489629 LMOD1P29536 600 aaPredicted RBP6.87□□□□□ -1.31
CPSF3-205ENST00000489629 DGKGP49619 791 aa6.87□□□□□ -1.31
CPSF3-205ENST00000489629 PCBP4P57723 403 aaKnown RBP6.87□□□□□ -1.31
CPSF3-205ENST00000489629 USP17L24Q0WX57 530 aa6.87□□□□□ -1.31
CPSF3-205ENST00000489629 SFSWAPQ12872 951 aaKnown RBP6.87□□□□□ -1.31
CPSF3-205ENST00000489629 PLA2G4EQ3MJ16 856 aa6.87□□□□□ -1.31
CPSF3-205ENST00000489629 GPAT2Q6NUI2 795 aa6.87□□□□□ -1.31
CPSF3-205ENST00000489629 ZNF280CQ8ND82 737 aa6.87□□□□□ -1.31
CPSF3-205ENST00000489629 SCG3Q8WXD2 468 aaKnown RBP6.87□□□□□ -1.31
CPSF3-205ENST00000489629 ARXQ96QS3 562 aa6.87□□□□□ -1.31
CPSF3-205ENST00000489629 VRTNQ9H8Y1 702 aa6.87□□□□□ -1.31
CPSF3-205ENST00000489629 RRAGCQ9HB90 399 aa6.87□□□□□ -1.31
CPSF3-205ENST00000489629 ZNF777Q9ULD5 760 aaPredicted RBP6.87□□□□□ -1.31
CPSF3-205ENST00000489629 CHMP3Q9Y3E7 222 aa6.87□□□□□ -1.31
CPSF3-205ENST00000489629 RBM19Q9Y4C8 960 aaKnown RBP6.87□□□□□ -1.31
CPSF3-205ENST00000489629 AMPD1P23109 780 aa6.86□□□□□ -1.31
CPSF3-205ENST00000489629 CHSY3Q70JA7 882 aa6.86□□□□□ -1.31
CPSF3-205ENST00000489629 ANKMY2Q8IV38 441 aa6.86□□□□□ -1.31
CPSF3-205ENST00000489629 ALDH16A1Q8IZ83 802 aa6.86□□□□□ -1.31
CPSF3-205ENST00000489629 HSH2DQ96JZ2 352 aa6.86□□□□□ -1.31
CPSF3-205ENST00000489629 SUSD3Q96L08 255 aa6.86□□□□□ -1.31
CPSF3-205ENST00000489629 SLC30A3Q99726 388 aa6.86□□□□□ -1.31
CPSF3-205ENST00000489629 SUV39H2Q9H5I1 410 aa6.86□□□□□ -1.31
CPSF3-205ENST00000489629 NEUROD4Q9HD90 331 aa6.86□□□□□ -1.31
CPSF3-205ENST00000489629 PRR12Q9ULL5 1215 aa6.86□□□□□ -1.31
CPSF3-205ENST00000489629 KCNQ4P56696 695 aa6.85□□□□□ -1.31
CPSF3-205ENST00000489629 TYRO3Q06418 890 aa6.85□□□□□ -1.31
CPSF3-205ENST00000489629 ANKIB1Q9P2G1 1089 aa6.85□□□□□ -1.31
CPSF3-205ENST00000489629 KRBA1A5PL33 1030 aa6.84□□□□□ -1.31
CPSF3-205ENST00000489629 SYT9Q86SS6 491 aa6.84□□□□□ -1.31
CPSF3-205ENST00000489629 ALYREFQ86V81 257 aaKnown RBP6.84□□□□□ -1.31
CPSF3-205ENST00000489629 HINFPQ9BQA5 517 aa6.84□□□□□ -1.31
CPSF3-205ENST00000489629 BRD7Q9NPI1 651 aa6.84□□□□□ -1.31
CPSF3-205ENST00000489629 SIN3BO75182 1162 aa6.83□□□□□ -1.32
CPSF3-205ENST00000489629 LGR5O75473 907 aa6.83□□□□□ -1.32
CPSF3-205ENST00000489629 IGFBP4P22692 258 aa6.83□□□□□ -1.32
CPSF3-205ENST00000489629 CHMP7Q8WUX9 453 aaPredicted RBP6.83□□□□□ -1.32
CPSF3-205ENST00000489629 CEP63Q96MT8 703 aa6.83□□□□□ -1.32
CPSF3-205ENST00000489629 ELOA3CA0A087WX78 387 aaPredicted RBP6.82□□□□□ -1.32
CPSF3-205ENST00000489629 ELOA3DA6NLF2 546 aaPredicted RBP6.82□□□□□ -1.32
CPSF3-205ENST00000489629 ADARB2-AS1A8MUL3 147 aa6.82□□□□□ -1.32
CPSF3-205ENST00000489629 GNB5O14775 395 aa6.82□□□□□ -1.32
CPSF3-205ENST00000489629 PROCP04070 461 aa6.82□□□□□ -1.32
CPSF3-205ENST00000489629 SUZ12Q15022 739 aaKnown RBP6.82□□□□□ -1.32
CPSF3-205ENST00000489629 ELOA3BQ3SY89 546 aa6.82□□□□□ -1.32
CPSF3-205ENST00000489629 ELOA3Q8NG57 546 aa6.82□□□□□ -1.32
CPSF3-205ENST00000489629 TNFRSF25Q93038 417 aa6.82□□□□□ -1.32
CPSF3-205ENST00000489629 SPOCK3Q9BQ16 436 aa6.82□□□□□ -1.32
CPSF3-205ENST00000489629 WEE1P30291 646 aa6.81□□□□□ -1.32
CPSF3-205ENST00000489629 SPEM2Q0P670 501 aa6.81□□□□□ -1.32
CPSF3-205ENST00000489629 RTN1Q16799 776 aa6.81□□□□□ -1.32
CPSF3-205ENST00000489629 BTLAQ7Z6A9 289 aa6.81□□□□□ -1.32
CPSF3-205ENST00000489629 NGLY1Q96IV0 654 aa6.81□□□□□ -1.32
CPSF3-205ENST00000489629 DMGDHQ9UI17 866 aaKnown RBP6.81□□□□□ -1.32
CPSF3-205ENST00000489629 KCNH4Q9UQ05 1017 aa6.81□□□□□ -1.32
CPSF3-205ENST00000489629 BCS1LQ9Y276 419 aa6.81□□□□□ -1.32
CPSF3-205ENST00000489629 PIK3R2O00459 728 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms