RNA–Protein interactions for RNA: ENST00000473295.2

SCN1A-205, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 544 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-205ENST00000473295 RHPN1Q8TCX5 695 aa6.88□□□□□ -1.31
SCN1A-205ENST00000473295 TFIP11Q9UBB9 837 aaKnown RBP6.88□□□□□ -1.31
SCN1A-205ENST00000473295 MAFBQ9Y5Q3 323 aaPredicted RBP6.88□□□□□ -1.31
SCN1A-205ENST00000473295 RASA1P20936 1047 aa6.87□□□□□ -1.31
SCN1A-205ENST00000473295 SEC13P55735 322 aa6.87□□□□□ -1.31
SCN1A-205ENST00000473295 SNRPNP63162 240 aaKnown RBP6.87□□□□□ -1.31
SCN1A-205ENST00000473295 ZNF468Q5VIY5 522 aaPredicted RBP6.87□□□□□ -1.31
SCN1A-205ENST00000473295 LARP1Q6PKG0 1096 aaKnown RBP6.87□□□□□ -1.31
SCN1A-205ENST00000473295 POTEAQ6S8J7 498 aa6.87□□□□□ -1.31
SCN1A-205ENST00000473295 STAG2Q8N3U4 1231 aa6.87□□□□□ -1.31
SCN1A-205ENST00000473295 ZNF594Q96JF6 807 aaPredicted RBP6.87□□□□□ -1.31
SCN1A-205ENST00000473295 BTBD6Q96KE9 485 aa6.87□□□□□ -1.31
SCN1A-205ENST00000473295 TSPAN10Q9H1Z9 355 aaPredicted RBP6.87□□□□□ -1.31
SCN1A-205ENST00000473295 NOP53Q9NZM5 478 aaKnown RBP6.87□□□□□ -1.31
SCN1A-205ENST00000473295 GNB5O14775 395 aa6.86□□□□□ -1.31
SCN1A-205ENST00000473295 NEUROD1Q13562 356 aa6.86□□□□□ -1.31
SCN1A-205ENST00000473295 PLA2G4EQ3MJ16 856 aa6.86□□□□□ -1.31
SCN1A-205ENST00000473295 TBCELQ5QJ74 424 aa6.86□□□□□ -1.31
SCN1A-205ENST00000473295 LRRC69Q6ZNQ3 347 aa6.86□□□□□ -1.31
SCN1A-205ENST00000473295 MSTNO14793 375 aa6.85□□□□□ -1.31
SCN1A-205ENST00000473295 PPP1R12BO60237 982 aaPredicted RBP6.85□□□□□ -1.31
SCN1A-205ENST00000473295 CHSY3Q70JA7 882 aa6.85□□□□□ -1.31
SCN1A-205ENST00000473295 PPP1R12CQ9BZL4 782 aa6.85□□□□□ -1.31
SCN1A-205ENST00000473295 ATAD2Q6PL18 1390 aa6.84□□□□□ -1.31
SCN1A-205ENST00000473295 FAM196BA6NMK8 535 aa6.84□□□□□ -1.31
SCN1A-205ENST00000473295 SFI1A8K8P3 1242 aa6.84□□□□□ -1.31
SCN1A-205ENST00000473295 ALAS2P22557 587 aa6.84□□□□□ -1.31
SCN1A-205ENST00000473295 DGKGP49619 791 aa6.84□□□□□ -1.31
SCN1A-205ENST00000473295 TSEN2Q8NCE0 465 aaKnown RBP6.84□□□□□ -1.31
SCN1A-205ENST00000473295 PHACTR1Q9C0D0 580 aa6.84□□□□□ -1.31
SCN1A-205ENST00000473295 ELOA3CA0A087WX78 387 aaPredicted RBP6.83□□□□□ -1.32
SCN1A-205ENST00000473295 ELOA3DA6NLF2 546 aaPredicted RBP6.83□□□□□ -1.32
SCN1A-205ENST00000473295 DKK1O94907 266 aa6.83□□□□□ -1.32
SCN1A-205ENST00000473295 ELOA3BQ3SY89 546 aa6.83□□□□□ -1.32
SCN1A-205ENST00000473295 SH3PXD2AQ5TCZ1 1133 aa6.83□□□□□ -1.32
SCN1A-205ENST00000473295 LINC00114Q6XXX2 140 aa6.83□□□□□ -1.32
SCN1A-205ENST00000473295 FCHSD1Q86WN1 690 aa6.83□□□□□ -1.32
SCN1A-205ENST00000473295 ELOA3Q8NG57 546 aa6.83□□□□□ -1.32
SCN1A-205ENST00000473295 C7orf43Q8WVR3 580 aa6.83□□□□□ -1.32
SCN1A-205ENST00000473295 VRTNQ9H8Y1 702 aa6.83□□□□□ -1.32
SCN1A-205ENST00000473295 HCN4Q9Y3Q4 1203 aa6.83□□□□□ -1.32
SCN1A-205ENST00000473295 SIN3BO75182 1162 aa6.82□□□□□ -1.32
SCN1A-205ENST00000473295 HOXB4P17483 251 aaPredicted RBP6.82□□□□□ -1.32
SCN1A-205ENST00000473295 PCBP4P57723 403 aaKnown RBP6.82□□□□□ -1.32
SCN1A-205ENST00000473295 PTK7Q13308 1070 aa6.82□□□□□ -1.32
SCN1A-205ENST00000473295 GRIN2CQ14957 1233 aa6.82□□□□□ -1.32
SCN1A-205ENST00000473295 SYT9Q86SS6 491 aa6.82□□□□□ -1.32
SCN1A-205ENST00000473295 CEP63Q96MT8 703 aa6.82□□□□□ -1.32
SCN1A-205ENST00000473295 C2orf49Q9BVC5 232 aaPredicted RBP6.82□□□□□ -1.32
SCN1A-205ENST00000473295 BRD7Q9NPI1 651 aa6.82□□□□□ -1.32
SCN1A-205ENST00000473295 STRN4Q9NRL3 753 aa6.82□□□□□ -1.32
SCN1A-205ENST00000473295 KLF15Q9UIH9 416 aa6.82□□□□□ -1.32
SCN1A-205ENST00000473295 HCN2Q9UL51 889 aa6.82□□□□□ -1.32
SCN1A-205ENST00000473295 USP17L15C9J2P7 530 aa6.81□□□□□ -1.32
SCN1A-205ENST00000473295 USP17L10C9JJH3 530 aa6.81□□□□□ -1.32
SCN1A-205ENST00000473295 USP17L13C9JLJ4 530 aa6.81□□□□□ -1.32
SCN1A-205ENST00000473295 USP17L12C9JPN9 530 aa6.81□□□□□ -1.32
SCN1A-205ENST00000473295 USP17L11C9JVI0 530 aa6.81□□□□□ -1.32
SCN1A-205ENST00000473295 USP17L21D6R901 530 aa6.81□□□□□ -1.32
SCN1A-205ENST00000473295 USP17L18D6R9N7 530 aa6.81□□□□□ -1.32
SCN1A-205ENST00000473295 USP17L22D6RA61 530 aa6.81□□□□□ -1.32
SCN1A-205ENST00000473295 USP17L17D6RBQ6 530 aa6.81□□□□□ -1.32
SCN1A-205ENST00000473295 USP17L19D6RCP7 530 aa6.81□□□□□ -1.32
SCN1A-205ENST00000473295 USP17L20D6RJB6 530 aa6.81□□□□□ -1.32
SCN1A-205ENST00000473295 KCNQ4P56696 695 aa6.81□□□□□ -1.32
SCN1A-205ENST00000473295 USP17L24Q0WX57 530 aa6.81□□□□□ -1.32
SCN1A-205ENST00000473295 SUZ12Q15022 739 aaKnown RBP6.81□□□□□ -1.32
SCN1A-205ENST00000473295 ALDH16A1Q8IZ83 802 aa6.81□□□□□ -1.32
SCN1A-205ENST00000473295 SCG3Q8WXD2 468 aaKnown RBP6.81□□□□□ -1.32
SCN1A-205ENST00000473295 HINFPQ9BQA5 517 aa6.81□□□□□ -1.32
SCN1A-205ENST00000473295 EFCC1Q9HA90 598 aa6.81□□□□□ -1.32
SCN1A-205ENST00000473295 SPDYE3A6NKU9 549 aa6.8□□□□□ -1.32
SCN1A-205ENST00000473295 ADARB2-AS1A8MUL3 147 aa6.8□□□□□ -1.32
SCN1A-205ENST00000473295 C21orf2O43822 256 aa6.8□□□□□ -1.32
SCN1A-205ENST00000473295 IGFBP4P22692 258 aa6.8□□□□□ -1.32
SCN1A-205ENST00000473295 LMOD1P29536 600 aaPredicted RBP6.8□□□□□ -1.32
SCN1A-205ENST00000473295 KANK4Q5T7N3 995 aaPredicted RBP6.8□□□□□ -1.32
SCN1A-205ENST00000473295 ANKMY2Q8IV38 441 aa6.8□□□□□ -1.32
SCN1A-205ENST00000473295 TNFRSF25Q93038 417 aa6.8□□□□□ -1.32
SCN1A-205ENST00000473295 SUSD3Q96L08 255 aa6.8□□□□□ -1.32
SCN1A-205ENST00000473295 SPOCK3Q9BQ16 436 aa6.8□□□□□ -1.32
SCN1A-205ENST00000473295 KCNH4Q9UQ05 1017 aa6.8□□□□□ -1.32
SCN1A-205ENST00000473295 COL8A1P27658 744 aa6.79□□□□□ -1.32
SCN1A-205ENST00000473295 TYRO3Q06418 890 aa6.79□□□□□ -1.32
SCN1A-205ENST00000473295 SPEM2Q0P670 501 aa6.79□□□□□ -1.32
SCN1A-205ENST00000473295 SFSWAPQ12872 951 aaKnown RBP6.79□□□□□ -1.32
SCN1A-205ENST00000473295 DPYDQ12882 1025 aa6.79□□□□□ -1.32
SCN1A-205ENST00000473295 CRTC2Q53ET0 693 aaPredicted RBP6.79□□□□□ -1.32
SCN1A-205ENST00000473295 IER5Q5VY09 327 aa6.79□□□□□ -1.32
SCN1A-205ENST00000473295 CHMP7Q8WUX9 453 aaPredicted RBP6.79□□□□□ -1.32
SCN1A-205ENST00000473295 HSH2DQ96JZ2 352 aa6.79□□□□□ -1.32
SCN1A-205ENST00000473295 KRBA1A5PL33 1030 aa6.78□□□□□ -1.32
SCN1A-205ENST00000473295 RTN1Q16799 776 aa6.78□□□□□ -1.32
SCN1A-205ENST00000473295 SUV39H2Q9H5I1 410 aa6.78□□□□□ -1.32
SCN1A-205ENST00000473295 FOXO3O43524 673 aa6.77□□□□□ -1.33
SCN1A-205ENST00000473295 PROCP04070 461 aa6.77□□□□□ -1.33
SCN1A-205ENST00000473295 BTLAQ7Z6A9 289 aa6.77□□□□□ -1.33
SCN1A-205ENST00000473295 NGLY1Q96IV0 654 aa6.77□□□□□ -1.33
SCN1A-205ENST00000473295 SLC30A3Q99726 388 aa6.77□□□□□ -1.33
SCN1A-205ENST00000473295 MDFIQ99750 246 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 117.9 ms