RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 BICC1Q9H694 974 aaKnown RBP23.53■■□□□ 1.36
COL9A3-201ENST00000343916 CWC27Q6UX04 472 aaKnown RBP23.53■■□□□ 1.36
COL9A3-201ENST00000343916 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.53■■□□□ 1.36
COL9A3-201ENST00000343916 SGSM2O43147 1006 aa23.52■■□□□ 1.36
COL9A3-201ENST00000343916 IGKV5-2P06315 115 aa23.52■■□□□ 1.36
COL9A3-201ENST00000343916 DDX49Q9Y6V7 483 aaKnown RBP23.52■■□□□ 1.36
COL9A3-201ENST00000343916 PTMSP20962 102 aa23.52■■□□□ 1.36
COL9A3-201ENST00000343916 FOXD4L5Q5VV16 416 aaPredicted RBP23.52■■□□□ 1.36
COL9A3-201ENST00000343916 FOXD4L4Q8WXT5 416 aaPredicted RBP23.52■■□□□ 1.36
COL9A3-201ENST00000343916 GRPEL1Q9HAV7 217 aa23.52■■□□□ 1.36
COL9A3-201ENST00000343916 CYP27B1O15528 508 aa23.51■■□□□ 1.35
COL9A3-201ENST00000343916 IFNL2Q8IZJ0 200 aa23.51■■□□□ 1.35
COL9A3-201ENST00000343916 HSPA4P34932 840 aa23.51■■□□□ 1.35
COL9A3-201ENST00000343916 MRE11P49959 708 aa23.51■■□□□ 1.35
COL9A3-201ENST00000343916 XAGE3Q8WTP9 111 aa23.51■■□□□ 1.35
COL9A3-201ENST00000343916 C5P01031 1676 aa23.5■■□□□ 1.35
COL9A3-201ENST00000343916 COPS6Q7L5N1 327 aa23.5■■□□□ 1.35
COL9A3-201ENST00000343916 USP16Q9Y5T5 823 aa23.5■■□□□ 1.35
COL9A3-201ENST00000343916 SCN11AQ9UI33 1791 aa23.5■■□□□ 1.35
COL9A3-201ENST00000343916 GLRX3O76003 335 aaKnown RBP23.5■■□□□ 1.35
COL9A3-201ENST00000343916 TTC41PQ6P2S7 1318 aa23.49■■□□□ 1.35
COL9A3-201ENST00000343916 USP42Q9H9J4 1324 aaKnown RBP23.49■■□□□ 1.35
COL9A3-201ENST00000343916 COL18A1P39060 1754 aa23.49■■□□□ 1.35
COL9A3-201ENST00000343916 MCM2P49736 904 aa23.49■■□□□ 1.35
COL9A3-201ENST00000343916 CADPS2Q86UW7 1296 aa23.49■■□□□ 1.35
COL9A3-201ENST00000343916 RAD50Q92878 1312 aa23.48■■□□□ 1.35
COL9A3-201ENST00000343916 IFIT2P09913 472 aaKnown RBP23.48■■□□□ 1.35
COL9A3-201ENST00000343916 AACSQ86V21 672 aa23.48■■□□□ 1.35
COL9A3-201ENST00000343916 KLHDC4Q8TBB5 520 aa23.48■■□□□ 1.35
COL9A3-201ENST00000343916 SIL1Q9H173 461 aa23.48■■□□□ 1.35
COL9A3-201ENST00000343916 UTYO14607 1347 aa23.48■■□□□ 1.35
COL9A3-201ENST00000343916 KLHL40Q2TBA0 621 aa23.48■■□□□ 1.35
COL9A3-201ENST00000343916 LSG1Q9H089 658 aaKnown RBP23.48■■□□□ 1.35
COL9A3-201ENST00000343916 TNS3Q68CZ2 1445 aa23.47■■□□□ 1.35
COL9A3-201ENST00000343916 SASH1O94885 1247 aa23.47■■□□□ 1.35
COL9A3-201ENST00000343916 MYD88Q99836 296 aa23.47■■□□□ 1.35
COL9A3-201ENST00000343916 ECHDC1Q9NTX5 307 aa23.47■■□□□ 1.35
COL9A3-201ENST00000343916 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.47■■□□□ 1.354e-7■□□□□ 10.1
COL9A3-201ENST00000343916 DCCP43146 1447 aa23.47■■□□□ 1.35
COL9A3-201ENST00000343916 NEURL1BA8MQ27 555 aa23.47■■□□□ 1.35
COL9A3-201ENST00000343916 LARP1Q6PKG0 1096 aaKnown RBP23.47■■□□□ 1.35
COL9A3-201ENST00000343916 TTC5Q8N0Z6 440 aa23.47■■□□□ 1.35
COL9A3-201ENST00000343916 JARID2Q92833 1246 aaPredicted RBP23.47■■□□□ 1.35
COL9A3-201ENST00000343916 LMBRD1Q9NUN5 540 aa23.47■■□□□ 1.35
COL9A3-201ENST00000343916 HDAC5Q9UQL6 1122 aa23.47■■□□□ 1.35
COL9A3-201ENST00000343916 CUL4AQ13619 759 aa23.46■■□□□ 1.35
COL9A3-201ENST00000343916 IL17RAQ96F46 866 aa23.46■■□□□ 1.35
COL9A3-201ENST00000343916 CRYBG1Q9Y4K1 1723 aa23.46■■□□□ 1.35
COL9A3-201ENST00000343916 ERC1Q8IUD2 1116 aa23.45■■□□□ 1.35
COL9A3-201ENST00000343916 RASEFQ8IZ41 740 aa23.45■■□□□ 1.35
COL9A3-201ENST00000343916 DCAF5Q96JK2 942 aa23.45■■□□□ 1.35
COL9A3-201ENST00000343916 SPATA31A3Q5VYP0 1347 aa23.45■■□□□ 1.34
COL9A3-201ENST00000343916 NCLP19338 710 aaKnown RBP23.45■■□□□ 1.34
COL9A3-201ENST00000343916 NEXNQ0ZGT2 675 aa23.45■■□□□ 1.34
COL9A3-201ENST00000343916 EAF2Q96CJ1 260 aaPredicted RBP23.45■■□□□ 1.34
COL9A3-201ENST00000343916 EPHA10Q5JZY3 1008 aa23.44■■□□□ 1.34
COL9A3-201ENST00000343916 CCDC8Q9H0W5 538 aaPredicted RBP23.44■■□□□ 1.34
COL9A3-201ENST00000343916 DIAPH3Q9NSV4 1193 aa23.44■■□□□ 1.34
COL9A3-201ENST00000343916 SNX14Q9Y5W7 946 aa23.44■■□□□ 1.34
COL9A3-201ENST00000343916 ZNF335Q9H4Z2 1342 aaPredicted RBP23.44■■□□□ 1.34
COL9A3-201ENST00000343916 PRPF40AO75400 957 aaKnown RBP23.44■■□□□ 1.34
COL9A3-201ENST00000343916 SNRPA1P09661 255 aaKnown RBP23.44■■□□□ 1.34
COL9A3-201ENST00000343916 G3BP1Q13283 466 aaKnown RBP eCLIP23.44■■□□□ 1.34
COL9A3-201ENST00000343916 GCKRQ14397 625 aa23.44■■□□□ 1.34
COL9A3-201ENST00000343916 EPB41L2O43491 1005 aaKnown RBP23.43■■□□□ 1.34
COL9A3-201ENST00000343916 KIAA1211Q6ZU35 1233 aa23.43■■□□□ 1.34
COL9A3-201ENST00000343916 LRP10Q7Z4F1 713 aa23.43■■□□□ 1.34
COL9A3-201ENST00000343916 TLR7Q9NYK1 1049 aaKnown RBP23.43■■□□□ 1.34
COL9A3-201ENST00000343916 XIRP1Q702N8 1843 aaKnown RBP23.43■■□□□ 1.34
COL9A3-201ENST00000343916 ANKRD13DQ6ZTN6 518 aa23.43■■□□□ 1.34
COL9A3-201ENST00000343916 METTL22Q9BUU2 404 aaPredicted RBP23.43■■□□□ 1.34
COL9A3-201ENST00000343916 GPATCH3Q96I76 525 aa23.42■■□□□ 1.34
COL9A3-201ENST00000343916 LARP6Q9BRS8 491 aaKnown RBP23.42■■□□□ 1.34
COL9A3-201ENST00000343916 ISY1Q9ULR0 285 aaKnown RBP23.42■■□□□ 1.34
COL9A3-201ENST00000343916 CABP4P57796 275 aa23.41■■□□□ 1.34
COL9A3-201ENST00000343916 CAVIN1Q6NZI2 390 aaKnown RBP23.41■■□□□ 1.34
COL9A3-201ENST00000343916 PTH1RQ03431 593 aa23.41■■□□□ 1.34
COL9A3-201ENST00000343916 FMNL2Q96PY5 1086 aa23.41■■□□□ 1.34
COL9A3-201ENST00000343916 INTS4Q96HW7 963 aaKnown RBP23.4■■□□□ 1.34
COL9A3-201ENST00000343916 CPA1P15085 419 aa23.4■■□□□ 1.34
COL9A3-201ENST00000343916 ATP5J2-PTCD1G3V325 749 aa23.39■■□□□ 1.33
COL9A3-201ENST00000343916 PTCD1O75127 700 aaKnown RBP23.39■■□□□ 1.33
COL9A3-201ENST00000343916 BRD1O95696 1058 aa23.39■■□□□ 1.33
COL9A3-201ENST00000343916 BRINP3Q76B58 766 aa23.38■■□□□ 1.33
COL9A3-201ENST00000343916 GPT2Q8TD30 523 aa23.38■■□□□ 1.33
COL9A3-201ENST00000343916 EVI5LQ96CN4 794 aa23.38■■□□□ 1.33
COL9A3-201ENST00000343916 BOLA2Q9H3K6 86 aa23.38■■□□□ 1.33
COL9A3-201ENST00000343916 MRC1P22897 1456 aa23.37■■□□□ 1.33
COL9A3-201ENST00000343916 FOXD4L6Q3SYB3 417 aaPredicted RBP23.37■■□□□ 1.33
COL9A3-201ENST00000343916 FOXD4L3Q6VB84 417 aaPredicted RBP23.37■■□□□ 1.33
COL9A3-201ENST00000343916 UBE3BQ7Z3V4 1068 aa23.37■■□□□ 1.33
COL9A3-201ENST00000343916 RUFY2Q8WXA3 655 aa23.37■■□□□ 1.33
COL9A3-201ENST00000343916 FAM227BQ96M60 508 aa23.37■■□□□ 1.33
COL9A3-201ENST00000343916 TTC14Q96N46 770 aa23.37■■□□□ 1.33
COL9A3-201ENST00000343916 AK2P54819 239 aa23.37■■□□□ 1.33
COL9A3-201ENST00000343916 CPDO75976 1380 aa23.36■■□□□ 1.33
COL9A3-201ENST00000343916 CASTP20810 708 aaKnown RBP23.36■■□□□ 1.33
COL9A3-201ENST00000343916 PRPF40BQ6NWY9 871 aaKnown RBP23.36■■□□□ 1.33
COL9A3-201ENST00000343916 PRDM11Q9NQV5 511 aa23.36■■□□□ 1.33
COL9A3-201ENST00000343916 RBM27Q9P2N5 1060 aaKnown RBP23.36■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms