RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 CCDC9Q9Y3X0 531 aaKnown RBP12.59□□□□□ -0.39
LIMA1-201ENST00000341247 GOLGA6L22H0YM25 854 aa12.58□□□□□ -0.4
LIMA1-201ENST00000341247 TTC5Q8N0Z6 440 aa12.58□□□□□ -0.4
LIMA1-201ENST00000341247 HYPKQ9NX55 129 aa12.58□□□□□ -0.4
LIMA1-201ENST00000341247 LMTK3Q96Q04 1460 aa12.58□□□□□ -0.4
LIMA1-201ENST00000341247 ATP5J2-PTCD1G3V325 749 aa12.58□□□□□ -0.4
LIMA1-201ENST00000341247 GRM8O00222 908 aa12.58□□□□□ -0.4
LIMA1-201ENST00000341247 PTCD1O75127 700 aaKnown RBP12.58□□□□□ -0.4
LIMA1-201ENST00000341247 IFIT2P09913 472 aaKnown RBP12.58□□□□□ -0.4
LIMA1-201ENST00000341247 DDX21Q9NR30 783 aaKnown RBP eCLIP12.58□□□□□ -0.4
LIMA1-201ENST00000341247 DDX58O95786 925 aaKnown RBP12.58□□□□□ -0.4
LIMA1-201ENST00000341247 CHMP4AQ9BY43 222 aa12.58□□□□□ -0.4
LIMA1-201ENST00000341247 CPA1P15085 419 aa12.57□□□□□ -0.4
LIMA1-201ENST00000341247 GAS2L3Q86XJ1 694 aa12.57□□□□□ -0.4
LIMA1-201ENST00000341247 PXDNLA1KZ92 1463 aa12.57□□□□□ -0.4
LIMA1-201ENST00000341247 CNTROBQ8N137 903 aa12.57□□□□□ -0.4
LIMA1-201ENST00000341247 KAZALD1Q96I82 304 aa12.57□□□□□ -0.4
LIMA1-201ENST00000341247 SCN11AQ9UI33 1791 aa12.57□□□□□ -0.4
LIMA1-201ENST00000341247 SPATA31A3Q5VYP0 1347 aa12.57□□□□□ -0.4
LIMA1-201ENST00000341247 IGKV5-2P06315 115 aa12.57□□□□□ -0.4
LIMA1-201ENST00000341247 IFNL2Q8IZJ0 200 aa12.57□□□□□ -0.4
LIMA1-201ENST00000341247 LINS1Q8NG48 757 aa12.56□□□□□ -0.4
LIMA1-201ENST00000341247 TNS3Q68CZ2 1445 aa12.56□□□□□ -0.4
LIMA1-201ENST00000341247 PRPF40AO75400 957 aaKnown RBP12.56□□□□□ -0.4
LIMA1-201ENST00000341247 ALDH1L1O75891 902 aa12.56□□□□□ -0.4
LIMA1-201ENST00000341247 NUCB2P80303 420 aa12.56□□□□□ -0.4
LIMA1-201ENST00000341247 DIAPH3Q9NSV4 1193 aa12.56□□□□□ -0.4
LIMA1-201ENST00000341247 CABP4P57796 275 aa12.55□□□□□ -0.4
LIMA1-201ENST00000341247 G3BP1Q13283 466 aaKnown RBP eCLIP12.55□□□□□ -0.4
LIMA1-201ENST00000341247 HSP90AB4PQ58FF6 505 aa12.55□□□□□ -0.4
LIMA1-201ENST00000341247 TLR7Q9NYK1 1049 aaKnown RBP12.55□□□□□ -0.4
LIMA1-201ENST00000341247 GLI3P10071 1580 aa12.55□□□□□ -0.4
LIMA1-201ENST00000341247 FSD2A1L4K1 749 aa12.55□□□□□ -0.4
LIMA1-201ENST00000341247 NEXNQ0ZGT2 675 aa12.55□□□□□ -0.4
LIMA1-201ENST00000341247 EPHA10Q5JZY3 1008 aa12.55□□□□□ -0.4
LIMA1-201ENST00000341247 KIAA1211Q6ZU35 1233 aa12.55□□□□□ -0.4
LIMA1-201ENST00000341247 ZDHHC9Q9Y397 364 aa12.55□□□□□ -0.4
LIMA1-201ENST00000341247 LRP10Q7Z4F1 713 aa12.55□□□□□ -0.4
LIMA1-201ENST00000341247 ZNF330Q9Y3S2 320 aaPredicted RBP12.55□□□□□ -0.4
LIMA1-201ENST00000341247 CADPS2Q86UW7 1296 aa12.54□□□□□ -0.4
LIMA1-201ENST00000341247 RASEFQ8IZ41 740 aa12.54□□□□□ -0.4
LIMA1-201ENST00000341247 BOLA2Q9H3K6 86 aa12.54□□□□□ -0.4
LIMA1-201ENST00000341247 GRPEL1Q9HAV7 217 aa12.54□□□□□ -0.4
LIMA1-201ENST00000341247 PRDM11Q9NQV5 511 aa12.54□□□□□ -0.4
LIMA1-201ENST00000341247 STRN4Q9NRL3 753 aa12.54□□□□□ -0.4
LIMA1-201ENST00000341247 CAVIN1Q6NZI2 390 aaKnown RBP12.54□□□□□ -0.4
LIMA1-201ENST00000341247 TOM1L2Q6ZVM7 507 aa12.54□□□□□ -0.4
LIMA1-201ENST00000341247 CHMP3Q9Y3E7 222 aa12.54□□□□□ -0.4
LIMA1-201ENST00000341247 NDUFB9Q9Y6M9 179 aa12.54□□□□□ -0.4
LIMA1-201ENST00000341247 SGSM2O43147 1006 aa12.54□□□□□ -0.4
LIMA1-201ENST00000341247 EAF2Q96CJ1 260 aaPredicted RBP12.54□□□□□ -0.4
LIMA1-201ENST00000341247 GLRX3O76003 335 aaKnown RBP12.53□□□□□ -0.4
LIMA1-201ENST00000341247 SASH1O94885 1247 aa12.53□□□□□ -0.4
LIMA1-201ENST00000341247 UBE3BQ7Z3V4 1068 aa12.53□□□□□ -0.4
LIMA1-201ENST00000341247 ECHDC1Q9NTX5 307 aa12.53□□□□□ -0.4
LIMA1-201ENST00000341247 LARP1Q6PKG0 1096 aaKnown RBP12.53□□□□□ -0.4
LIMA1-201ENST00000341247 ANKRD13DQ6ZTN6 518 aa12.53□□□□□ -0.4
LIMA1-201ENST00000341247 EDC3Q96F86 508 aaKnown RBP12.53□□□□□ -0.4
LIMA1-201ENST00000341247 RBM27Q9P2N5 1060 aaKnown RBP12.53□□□□□ -0.4
LIMA1-201ENST00000341247 DCCP43146 1447 aa12.53□□□□□ -0.4
LIMA1-201ENST00000341247 EP400Q96L91 3159 aa12.53□□□□□ -0.4
LIMA1-201ENST00000341247 NEURL1BA8MQ27 555 aa12.53□□□□□ -0.4
LIMA1-201ENST00000341247 CWC22Q9HCG8 908 aaKnown RBP12.53□□□□□ -0.4
LIMA1-201ENST00000341247 PTH1RQ03431 593 aa12.52□□□□□ -0.4
LIMA1-201ENST00000341247 SNRPA1P09661 255 aaKnown RBP12.52□□□□□ -0.41
LIMA1-201ENST00000341247 SKOR2Q2VWA4 1001 aaPredicted RBP12.52□□□□□ -0.41
LIMA1-201ENST00000341247 PRPF40BQ6NWY9 871 aaKnown RBP12.52□□□□□ -0.41
LIMA1-201ENST00000341247 AOX1Q06278 1338 aa12.52□□□□□ -0.41
LIMA1-201ENST00000341247 HSPA4P34932 840 aa12.52□□□□□ -0.41
LIMA1-201ENST00000341247 KCNJ4P48050 445 aa12.52□□□□□ -0.41
LIMA1-201ENST00000341247 GCKRQ14397 625 aa12.52□□□□□ -0.41
LIMA1-201ENST00000341247 FAM227BQ96M60 508 aa12.52□□□□□ -0.41
LIMA1-201ENST00000341247 GDPD2Q9HCC8 539 aa12.52□□□□□ -0.41
LIMA1-201ENST00000341247 SNX14Q9Y5W7 946 aa12.52□□□□□ -0.41
LIMA1-201ENST00000341247 CYP2E1P05181 493 aaPredicted RBP12.51□□□□□ -0.41
LIMA1-201ENST00000341247 MRE11P49959 708 aa12.51□□□□□ -0.41
LIMA1-201ENST00000341247 DCAF5Q96JK2 942 aa12.51□□□□□ -0.41
LIMA1-201ENST00000341247 LSG1Q9H089 658 aaKnown RBP12.51□□□□□ -0.41
LIMA1-201ENST00000341247 MTX1Q13505 466 aa12.51□□□□□ -0.41
LIMA1-201ENST00000341247 GPATCH3Q96I76 525 aa12.51□□□□□ -0.41
LIMA1-201ENST00000341247 FMNL2Q96PY5 1086 aa12.51□□□□□ -0.41
LIMA1-201ENST00000341247 LMBRD1Q9NUN5 540 aa12.51□□□□□ -0.41
LIMA1-201ENST00000341247 RAD50Q92878 1312 aa12.51□□□□□ -0.41
LIMA1-201ENST00000341247 CASTP20810 708 aaKnown RBP12.5□□□□□ -0.41
LIMA1-201ENST00000341247 METTL22Q9BUU2 404 aaPredicted RBP12.5□□□□□ -0.41
LIMA1-201ENST00000341247 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.5□□□□□ -0.41
LIMA1-201ENST00000341247 A0A087WZG4 1122 aa12.5□□□□□ -0.41
LIMA1-201ENST00000341247 ANAPC15P60006 121 aa12.5□□□□□ -0.41
LIMA1-201ENST00000341247 PKD1L3Q7Z443 1732 aa12.5□□□□□ -0.41
LIMA1-201ENST00000341247 ERC1Q8IUD2 1116 aa12.5□□□□□ -0.41
LIMA1-201ENST00000341247 NSFL1CQ9UNZ2 370 aaKnown RBP12.5□□□□□ -0.41
LIMA1-201ENST00000341247 CHGBP05060 677 aa12.49□□□□□ -0.41
LIMA1-201ENST00000341247 ADCK5Q3MIX3 580 aa12.49□□□□□ -0.41
LIMA1-201ENST00000341247 TCEANC2Q96MN5 208 aa12.49□□□□□ -0.41
LIMA1-201ENST00000341247 FSD1Q9BTV5 496 aa12.49□□□□□ -0.41
LIMA1-201ENST00000341247 SLAIN2Q9P270 581 aa12.49□□□□□ -0.41
LIMA1-201ENST00000341247 TTC41PQ6P2S7 1318 aa12.49□□□□□ -0.41
LIMA1-201ENST00000341247 OVOS2A0A0G2JMS6 1433 aa12.49□□□□□ -0.41
LIMA1-201ENST00000341247 SHANK3Q9BYB0 1731 aa12.49□□□□□ -0.41
LIMA1-201ENST00000341247 A1BGP04217 495 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms