RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 COMMD10Q9Y6G5 202 aa6.06□□□□□ -1.44
SCN1A-201ENST00000303395 GOLGA4Q13439 2230 aaKnown RBP6.06□□□□□ -1.44
SCN1A-201ENST00000303395 EIF4G3O43432 1585 aaKnown RBP6.06□□□□□ -1.44
SCN1A-201ENST00000303395 SLC3A2P08195 630 aaKnown RBP6.06□□□□□ -1.44
SCN1A-201ENST00000303395 SH2D4BQ5SQS7 431 aa6.06□□□□□ -1.44
SCN1A-201ENST00000303395 TAOK3Q9H2K8 898 aa6.06□□□□□ -1.44
SCN1A-201ENST00000303395 EID1Q9Y6B2 187 aa6.06□□□□□ -1.44
SCN1A-201ENST00000303395 CALR3Q96L12 384 aaKnown RBP6.05□□□□□ -1.44
SCN1A-201ENST00000303395 TSKSQ9UJT2 592 aa6.05□□□□□ -1.44
SCN1A-201ENST00000303395 PLVAPQ9BX97 442 aa6.05□□□□□ -1.44
SCN1A-201ENST00000303395 ANO2Q9NQ90 1003 aa6.05□□□□□ -1.44
SCN1A-201ENST00000303395 KDM5AP29375 1690 aaKnown RBP6.05□□□□□ -1.44
SCN1A-201ENST00000303395 GRIN2AQ12879 1464 aa6.05□□□□□ -1.44
SCN1A-201ENST00000303395 CCDC172P0C7W6 258 aa6.05□□□□□ -1.44
SCN1A-201ENST00000303395 EIF5P55010 431 aaKnown RBP6.05□□□□□ -1.44
SCN1A-201ENST00000303395 LLPHQ9BRT6 129 aaKnown RBP6.05□□□□□ -1.44
SCN1A-201ENST00000303395 NSD3Q9BZ95 1437 aa6.05□□□□□ -1.44
SCN1A-201ENST00000303395 KDM2BQ8NHM5 1336 aa6.05□□□□□ -1.44
SCN1A-201ENST00000303395 ERCC3P19447 782 aa6.05□□□□□ -1.44
SCN1A-201ENST00000303395 NBPF11Q86T75 865 aa6.05□□□□□ -1.44
SCN1A-201ENST00000303395 PLCD3Q8N3E9 789 aa6.05□□□□□ -1.44
SCN1A-201ENST00000303395 KCNG4Q8TDN1 519 aa6.05□□□□□ -1.44
SCN1A-201ENST00000303395 UPF3BQ9BZI7 483 aaKnown RBP6.05□□□□□ -1.44
SCN1A-201ENST00000303395 ARHGEF10O15013 1369 aa6.05□□□□□ -1.44
SCN1A-201ENST00000303395 MX1P20591 662 aa6.05□□□□□ -1.44
SCN1A-201ENST00000303395 SMC1AQ14683 1233 aaKnown RBP6.05□□□□□ -1.44
SCN1A-201ENST00000303395 CDK5RAP3Q96JB5 506 aa6.05□□□□□ -1.44
SCN1A-201ENST00000303395 FYB1O15117 783 aa6.05□□□□□ -1.44
SCN1A-201ENST00000303395 TCHPQ9BT92 498 aa6.05□□□□□ -1.44
SCN1A-201ENST00000303395 A0A1B0GUL7 405 aa6.05□□□□□ -1.44
SCN1A-201ENST00000303395 KIF1CO43896 1103 aaKnown RBP6.05□□□□□ -1.44
SCN1A-201ENST00000303395 UBTFL1P0CB47 393 aaPredicted RBP6.05□□□□□ -1.44
SCN1A-201ENST00000303395 RARSP54136 660 aaKnown RBP6.05□□□□□ -1.44
SCN1A-201ENST00000303395 CEP120Q8N960 986 aa6.05□□□□□ -1.44
SCN1A-201ENST00000303395 TM6SF1Q9BZW5 370 aa6.05□□□□□ -1.44
SCN1A-201ENST00000303395 CEP83Q9Y592 693 aa6.05□□□□□ -1.44
SCN1A-201ENST00000303395 ADAMTS12P58397 1594 aa6.05□□□□□ -1.44
SCN1A-201ENST00000303395 PLA2R1Q13018 1463 aa6.04□□□□□ -1.44
SCN1A-201ENST00000303395 BRD3Q15059 726 aa6.04□□□□□ -1.44
SCN1A-201ENST00000303395 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP6.04□□□□□ -1.44
SCN1A-201ENST00000303395 RMND1Q9NWS8 449 aa6.04□□□□□ -1.44
SCN1A-201ENST00000303395 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP6.04□□□□□ -1.44
SCN1A-201ENST00000303395 STK24Q9Y6E0 443 aa6.04□□□□□ -1.44
SCN1A-201ENST00000303395 GCOM1H8Y6P7 765 aaPredicted RBP6.04□□□□□ -1.44
SCN1A-201ENST00000303395 MYZAPP0CAP1 466 aa6.04□□□□□ -1.44
SCN1A-201ENST00000303395 CETN2P41208 172 aa6.04□□□□□ -1.44
SCN1A-201ENST00000303395 KIAA0232Q92628 1395 aa6.04□□□□□ -1.44
SCN1A-201ENST00000303395 DUSP27Q5VZP5 1158 aa6.04□□□□□ -1.44
SCN1A-201ENST00000303395 CERS3Q8IU89 383 aa6.04□□□□□ -1.44
SCN1A-201ENST00000303395 KIF1BPQ96EK5 621 aa6.04□□□□□ -1.44
SCN1A-201ENST00000303395 ALS2CR12Q96Q35 445 aa6.04□□□□□ -1.44
SCN1A-201ENST00000303395 KIAA0556O60303 1618 aa6.04□□□□□ -1.44
SCN1A-201ENST00000303395 FERP16591 822 aa6.04□□□□□ -1.44
SCN1A-201ENST00000303395 CDC25BP30305 580 aa6.04□□□□□ -1.44
SCN1A-201ENST00000303395 MIPOL1Q8TD10 442 aa6.04□□□□□ -1.44
SCN1A-201ENST00000303395 MAGEC2Q9UBF1 373 aaPredicted RBP6.04□□□□□ -1.44
SCN1A-201ENST00000303395 USO1O60763 962 aaKnown RBP6.04□□□□□ -1.44
SCN1A-201ENST00000303395 RIPK4P57078 832 aa6.04□□□□□ -1.44
SCN1A-201ENST00000303395 MRPS9P82933 396 aaKnown RBP6.04□□□□□ -1.44
SCN1A-201ENST00000303395 NFE2L2Q16236 605 aa6.04□□□□□ -1.44
SCN1A-201ENST00000303395 PRPF31Q8WWY3 499 aaKnown RBP6.04□□□□□ -1.44
SCN1A-201ENST00000303395 CARMIL3Q8ND23 1372 aa6.04□□□□□ -1.44
SCN1A-201ENST00000303395 CCDC57Q2TAC2 916 aa6.04□□□□□ -1.44
SCN1A-201ENST00000303395 AMOTQ4VCS5 1084 aa6.04□□□□□ -1.44
SCN1A-201ENST00000303395 NFXL1Q6ZNB6 911 aa6.04□□□□□ -1.44
SCN1A-201ENST00000303395 FMNL2Q96PY5 1086 aa6.04□□□□□ -1.44
SCN1A-201ENST00000303395 TBC1D2Q9BYX2 928 aa6.04□□□□□ -1.44
SCN1A-201ENST00000303395 ADCY10Q96PN6 1610 aa6.04□□□□□ -1.44
SCN1A-201ENST00000303395 ARHGAP29Q52LW3 1261 aa6.03□□□□□ -1.44
SCN1A-201ENST00000303395 CACNA2D4Q7Z3S7 1137 aa6.03□□□□□ -1.44
SCN1A-201ENST00000303395 PAIP2Q9BPZ3 127 aaKnown RBP6.03□□□□□ -1.44
SCN1A-201ENST00000303395 GPATCH8Q9UKJ3 1502 aaKnown RBP6.03□□□□□ -1.44
SCN1A-201ENST00000303395 BAG4O95429 457 aaKnown RBP6.03□□□□□ -1.44
SCN1A-201ENST00000303395 NUCB1Q02818 461 aa6.03□□□□□ -1.44
SCN1A-201ENST00000303395 SKIDA1Q1XH10 827 aa6.03□□□□□ -1.44
SCN1A-201ENST00000303395 BRAPQ7Z569 592 aa6.03□□□□□ -1.44
SCN1A-201ENST00000303395 SPATA32Q96LK8 384 aa6.03□□□□□ -1.44
SCN1A-201ENST00000303395 MOV10L1Q9BXT6 1211 aaKnown RBP6.03□□□□□ -1.44
SCN1A-201ENST00000303395 CD109Q6YHK3 1445 aa6.03□□□□□ -1.44
SCN1A-201ENST00000303395 ZFYP08048 801 aaPredicted RBP6.03□□□□□ -1.44
SCN1A-201ENST00000303395 POTEJP0CG39 1038 aa6.03□□□□□ -1.44
SCN1A-201ENST00000303395 NEK4P51957 841 aa6.03□□□□□ -1.44
SCN1A-201ENST00000303395 ZNF287Q9HBT7 754 aa6.03□□□□□ -1.44
SCN1A-201ENST00000303395 SWAP70Q9UH65 585 aa6.03□□□□□ -1.44
SCN1A-201ENST00000303395 HDAC9Q9UKV0 1011 aa6.03□□□□□ -1.44
SCN1A-201ENST00000303395 EVA1CP58658 441 aa6.03□□□□□ -1.44
SCN1A-201ENST00000303395 CCDC155Q8N6L0 562 aa6.03□□□□□ -1.44
SCN1A-201ENST00000303395 ADAMTS8Q9UP79 889 aa6.03□□□□□ -1.44
SCN1A-201ENST00000303395 IRX3P78415 501 aaPredicted RBP6.03□□□□□ -1.44
SCN1A-201ENST00000303395 IFFO1Q0D2I5 559 aa6.03□□□□□ -1.44
SCN1A-201ENST00000303395 BRPF3Q9ULD4 1205 aa6.03□□□□□ -1.44
SCN1A-201ENST00000303395 CCDC181Q5TID7 509 aa6.03□□□□□ -1.44
SCN1A-201ENST00000303395 BLOC1S2Q6QNY1 142 aa6.03□□□□□ -1.44
SCN1A-201ENST00000303395 BCL2L13Q9BXK5 485 aa6.03□□□□□ -1.44
SCN1A-201ENST00000303395 RFX7Q2KHR2 1363 aa6.03□□□□□ -1.44
SCN1A-201ENST00000303395 STK38Q15208 465 aa6.03□□□□□ -1.44
SCN1A-201ENST00000303395 RAB3IL1Q8TBN0 382 aa6.03□□□□□ -1.44
SCN1A-201ENST00000303395 TNPO1Q92973 898 aaKnown RBP6.03□□□□□ -1.44
SCN1A-201ENST00000303395 ZNF622Q969S3 477 aaKnown RBP eCLIP6.03□□□□□ -1.44
SCN1A-201ENST00000303395 RAB34Q9BZG1 259 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms