RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 GOLGA7Q7Z5G4 137 aa17.7■□□□□ 0.42
CCDC28A-203ENST00000617445 CTAGE4Q8IX94 777 aa17.7■□□□□ 0.42
CCDC28A-203ENST00000617445 GOLM1Q8NBJ4 401 aa17.7■□□□□ 0.42
CCDC28A-203ENST00000617445 IFT81Q8WYA0 676 aa17.7■□□□□ 0.42
CCDC28A-203ENST00000617445 VKORC1Q9BQB6 163 aa17.7■□□□□ 0.42
CCDC28A-203ENST00000617445 DDX31Q9H8H2 851 aaKnown RBP17.7■□□□□ 0.42
CCDC28A-203ENST00000617445 SDAD1Q9NVU7 687 aaKnown RBP eCLIP17.7■□□□□ 0.42
CCDC28A-203ENST00000617445 ZNF180Q9UJW8 692 aa17.7■□□□□ 0.42
CCDC28A-203ENST00000617445 STX16-NPEPL1H3BU86 382 aa17.69■□□□□ 0.42
CCDC28A-203ENST00000617445 KIF2AO00139 706 aaPredicted RBP17.69■□□□□ 0.42
CCDC28A-203ENST00000617445 WWP2O00308 870 aa17.69■□□□□ 0.42
CCDC28A-203ENST00000617445 STX16O14662 325 aa17.69■□□□□ 0.42
CCDC28A-203ENST00000617445 PROM1O43490 865 aa17.69■□□□□ 0.42
CCDC28A-203ENST00000617445 FGF17O60258 216 aa17.69■□□□□ 0.42
CCDC28A-203ENST00000617445 ACSL3O95573 720 aa17.69■□□□□ 0.42
CCDC28A-203ENST00000617445 HTR1EP28566 365 aa17.69■□□□□ 0.42
CCDC28A-203ENST00000617445 RPS13P62277 151 aaKnown RBP17.69■□□□□ 0.42
CCDC28A-203ENST00000617445 ADORA2A-AS1P86434 159 aa17.69■□□□□ 0.42
CCDC28A-203ENST00000617445 PLIN5Q00G26 463 aa17.69■□□□□ 0.42
CCDC28A-203ENST00000617445 TNFRSF17Q02223 184 aa17.69■□□□□ 0.42
CCDC28A-203ENST00000617445 PAOXQ6QHF9 649 aa17.69■□□□□ 0.42
CCDC28A-203ENST00000617445 IL20RBQ6UXL0 311 aa17.69■□□□□ 0.42
CCDC28A-203ENST00000617445 RTL4Q6ZR62 310 aa17.69■□□□□ 0.42
CCDC28A-203ENST00000617445 DOLPP1Q86YN1 238 aa17.69■□□□□ 0.42
CCDC28A-203ENST00000617445 CHERPQ8IWX8 916 aaKnown RBP17.69■□□□□ 0.42
CCDC28A-203ENST00000617445 NUBPLQ8TB37 319 aa17.69■□□□□ 0.42
CCDC28A-203ENST00000617445 WDR20Q8TBZ3 569 aa17.69■□□□□ 0.42
CCDC28A-203ENST00000617445 ZNF721Q8TF20 911 aa17.69■□□□□ 0.42
CCDC28A-203ENST00000617445 ZNF592Q92610 1267 aa17.69■□□□□ 0.42
CCDC28A-203ENST00000617445 ATP6V1E2Q96A05 226 aa17.69■□□□□ 0.42
CCDC28A-203ENST00000617445 SENP5Q96HI0 755 aaPredicted RBP17.69■□□□□ 0.42
CCDC28A-203ENST00000617445 SERPINI1Q99574 410 aa17.69■□□□□ 0.42
CCDC28A-203ENST00000617445 NTMT1Q9BV86 223 aa17.69■□□□□ 0.42
CCDC28A-203ENST00000617445 WDR41Q9HAD4 459 aa17.69■□□□□ 0.42
CCDC28A-203ENST00000617445 MYOCOSA0A1B0GUC4 107 aa17.68■□□□□ 0.42
CCDC28A-203ENST00000617445 SMIM24O75264 130 aa17.68■□□□□ 0.42
CCDC28A-203ENST00000617445 OR6B1O95007 311 aa17.68■□□□□ 0.42
CCDC28A-203ENST00000617445 SEMA3DO95025 777 aa17.68■□□□□ 0.42
CCDC28A-203ENST00000617445 ETHE1O95571 254 aa17.68■□□□□ 0.42
CCDC28A-203ENST00000617445 GALNSP34059 522 aa17.68■□□□□ 0.42
CCDC28A-203ENST00000617445 PTGER1P34995 402 aa17.68■□□□□ 0.42
CCDC28A-203ENST00000617445 PTGS2P35354 604 aa17.68■□□□□ 0.42
CCDC28A-203ENST00000617445 SOX3P41225 446 aa17.68■□□□□ 0.42
CCDC28A-203ENST00000617445 CCNG1P51959 295 aa17.68■□□□□ 0.42
CCDC28A-203ENST00000617445 FOLH1Q04609 750 aa17.68■□□□□ 0.42
CCDC28A-203ENST00000617445 TBL3Q12788 808 aaKnown RBP17.68■□□□□ 0.42
CCDC28A-203ENST00000617445 LGSNQ5TDP6 509 aa17.68■□□□□ 0.42
CCDC28A-203ENST00000617445 MRM1Q6IN84 353 aaKnown RBP17.68■□□□□ 0.42
CCDC28A-203ENST00000617445 ARHGAP11AQ6P4F7 1023 aa17.68■□□□□ 0.42
CCDC28A-203ENST00000617445 CYP20A1Q6UW02 462 aa17.68■□□□□ 0.42
CCDC28A-203ENST00000617445 ST13P4Q8IZP2 240 aaPredicted RBP17.68■□□□□ 0.42
CCDC28A-203ENST00000617445 CNPY4Q8N129 248 aa17.68■□□□□ 0.42
CCDC28A-203ENST00000617445 PLD6Q8N2A8 252 aaKnown RBP17.68■□□□□ 0.42
CCDC28A-203ENST00000617445 SLC15A4Q8N697 577 aa17.68■□□□□ 0.42
CCDC28A-203ENST00000617445 PTGR2Q8N8N7 351 aaPredicted RBP17.68■□□□□ 0.42
CCDC28A-203ENST00000617445 NOA1Q8NC60 698 aaKnown RBP17.68■□□□□ 0.42
CCDC28A-203ENST00000617445 AGAP11Q8TF27 550 aa17.68■□□□□ 0.42
CCDC28A-203ENST00000617445 PAFAH2Q99487 392 aa17.68■□□□□ 0.42
CCDC28A-203ENST00000617445 SORBS1Q9BX66 1292 aaKnown RBP17.68■□□□□ 0.42
CCDC28A-203ENST00000617445 NOL11Q9H8H0 719 aaKnown RBP17.68■□□□□ 0.42
CCDC28A-203ENST00000617445 LIN28AQ9H9Z2 209 aaKnown RBP17.68■□□□□ 0.42
CCDC28A-203ENST00000617445 PLSCR2Q9NRY7 297 aa17.68■□□□□ 0.42
CCDC28A-203ENST00000617445 RNF11Q9Y3C5 154 aa17.68■□□□□ 0.42
CCDC28A-203ENST00000617445 ATG4BQ9Y4P1 393 aa17.68■□□□□ 0.42
CCDC28A-203ENST00000617445 EML6Q6ZMW3 1958 aa17.68■□□□□ 0.42
CCDC28A-203ENST00000617445 LRBAP50851 2863 aa17.67■□□□□ 0.42
CCDC28A-203ENST00000617445 A0A087WUV0 522 aaPredicted RBP17.67■□□□□ 0.42
CCDC28A-203ENST00000617445 A0A0A6YYD5 115 aa17.67■□□□□ 0.42
CCDC28A-203ENST00000617445 ARHGAP10A1A4S6 786 aa17.67■□□□□ 0.42
CCDC28A-203ENST00000617445 LRRC14BA6NHZ5 514 aa17.67■□□□□ 0.42
CCDC28A-203ENST00000617445 ACOT7O00154 380 aa17.67■□□□□ 0.42
CCDC28A-203ENST00000617445 HS6ST1O60243 411 aa17.67■□□□□ 0.42
CCDC28A-203ENST00000617445 SIX3O95343 332 aaPredicted RBP17.67■□□□□ 0.42
CCDC28A-203ENST00000617445 GPR75O95800 540 aa17.67■□□□□ 0.42
CCDC28A-203ENST00000617445 IGKV3-11P04433 115 aa17.67■□□□□ 0.42
CCDC28A-203ENST00000617445 ALOX15P16050 662 aaPredicted RBP17.67■□□□□ 0.42
CCDC28A-203ENST00000617445 CNR1P21554 472 aa17.67■□□□□ 0.42
CCDC28A-203ENST00000617445 PTGER4P35408 488 aa17.67■□□□□ 0.42
CCDC28A-203ENST00000617445 BSGP35613 385 aa17.67■□□□□ 0.42
CCDC28A-203ENST00000617445 HNRNPH2P55795 449 aaKnown RBP17.67■□□□□ 0.42
CCDC28A-203ENST00000617445 GPR85P60893 370 aa17.67■□□□□ 0.42
CCDC28A-203ENST00000617445 ID2Q02363 134 aa17.67■□□□□ 0.42
CCDC28A-203ENST00000617445 CMPK2Q5EBM0 449 aa17.67■□□□□ 0.42
CCDC28A-203ENST00000617445 PIGGQ5H8A4 983 aa17.67■□□□□ 0.42
CCDC28A-203ENST00000617445 NDUFAF5Q5TEU4 345 aa17.67■□□□□ 0.42
CCDC28A-203ENST00000617445 C16orf47Q6ZP98 133 aaPredicted RBP17.67■□□□□ 0.42
CCDC28A-203ENST00000617445 GK5Q6ZS86 529 aa17.67■□□□□ 0.42
CCDC28A-203ENST00000617445 SLC22A16Q86VW1 577 aa17.67■□□□□ 0.42
CCDC28A-203ENST00000617445 NUDT13Q86X67 352 aa17.67■□□□□ 0.42
CCDC28A-203ENST00000617445 OR4N5Q8IXE1 308 aa17.67■□□□□ 0.42
CCDC28A-203ENST00000617445 DND1Q8IYX4 353 aaKnown RBP17.67■□□□□ 0.42
CCDC28A-203ENST00000617445 RNF175Q8N4F7 328 aa17.67■□□□□ 0.42
CCDC28A-203ENST00000617445 ZNF321PQ8N8H1 164 aa17.67■□□□□ 0.42
CCDC28A-203ENST00000617445 FAM57AQ8TBR7 257 aa17.67■□□□□ 0.42
CCDC28A-203ENST00000617445 PHF21BQ96EK2 531 aa17.67■□□□□ 0.42
CCDC28A-203ENST00000617445 FBXL20Q96IG2 436 aa17.67■□□□□ 0.42
CCDC28A-203ENST00000617445 SCYL1Q96KG9 808 aa17.67■□□□□ 0.42
CCDC28A-203ENST00000617445 PHF12Q96QT6 1004 aa17.67■□□□□ 0.42
CCDC28A-203ENST00000617445 MRPL57Q9BQC6 102 aaKnown RBP17.67■□□□□ 0.42
CCDC28A-203ENST00000617445 FAM173AQ9BQD7 235 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 107.8 ms