RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 OR1L3Q8NH93 324 aa17.58■□□□□ 0.4
CLN3-206ENST00000360019 ATOH1Q92858 354 aaPredicted RBP17.58■□□□□ 0.4
CLN3-206ENST00000360019 EDEM2Q9BV94 578 aa17.58■□□□□ 0.4
CLN3-206ENST00000360019 TRIM4Q9C037 500 aa17.58■□□□□ 0.4
CLN3-206ENST00000360019 PCDHAC1Q9H158 963 aa17.58■□□□□ 0.4
CLN3-206ENST00000360019 SLC35C2Q9NQQ7 365 aa17.58■□□□□ 0.4
CLN3-206ENST00000360019 USP22Q9UPT9 525 aa17.58■□□□□ 0.4
CLN3-206ENST00000360019 COL5A1P20908 1838 aaPredicted RBP17.57■□□□□ 0.4
CLN3-206ENST00000360019 NTN3O00634 580 aaPredicted RBP17.57■□□□□ 0.4
CLN3-206ENST00000360019 ACOT8O14734 319 aa17.57■□□□□ 0.4
CLN3-206ENST00000360019 NVLO15381 856 aaKnown RBP17.57■□□□□ 0.4
CLN3-206ENST00000360019 OR2B3O76000 313 aa17.57■□□□□ 0.4
CLN3-206ENST00000360019 ZCCHC18P0CG32 403 aa17.57■□□□□ 0.4
CLN3-206ENST00000360019 DDX5P17844 614 aaKnown RBP17.57■□□□□ 0.4
CLN3-206ENST00000360019 ACP1P24666 158 aa17.57■□□□□ 0.4
CLN3-206ENST00000360019 BUD31P41223 144 aaPredicted RBP17.57■□□□□ 0.4
CLN3-206ENST00000360019 ERFP50548 548 aa17.57■□□□□ 0.4
CLN3-206ENST00000360019 EEFSECP57772 596 aaKnown RBP17.57■□□□□ 0.4
CLN3-206ENST00000360019 GRM7Q14831 915 aa17.57■□□□□ 0.4
CLN3-206ENST00000360019 NDUFA9Q16795 377 aa17.57■□□□□ 0.4
CLN3-206ENST00000360019 FBXW10Q5XX13 1052 aa17.57■□□□□ 0.4
CLN3-206ENST00000360019 CLEC4FQ8N1N0 589 aa17.57■□□□□ 0.4
CLN3-206ENST00000360019 C10orf111Q8N326 155 aa17.57■□□□□ 0.4
CLN3-206ENST00000360019 ASB9Q96DX5 294 aa17.57■□□□□ 0.4
CLN3-206ENST00000360019 CCDC74BQ96LY2 380 aa17.57■□□□□ 0.4
CLN3-206ENST00000360019 DPYSL5Q9BPU6 564 aa17.57■□□□□ 0.4
CLN3-206ENST00000360019 THUMPD3Q9BV44 507 aaKnown RBP17.57■□□□□ 0.4
CLN3-206ENST00000360019 SEMA4GQ9NTN9 838 aa17.57■□□□□ 0.4
CLN3-206ENST00000360019 MS4A12Q9NXJ0 267 aa17.57■□□□□ 0.4
CLN3-206ENST00000360019 MUC6Q6W4X9 2439 aa17.57■□□□□ 0.4
CLN3-206ENST00000360019 A0A1W2PS29 197 aa17.56■□□□□ 0.4
CLN3-206ENST00000360019 TRIM25Q14258 630 aaKnown RBP17.56■□□□□ 0.4
CLN3-206ENST00000360019 ZNF750Q32MQ0 723 aa17.56■□□□□ 0.4
CLN3-206ENST00000360019 C6orf163Q5TEZ5 329 aa17.56■□□□□ 0.4
CLN3-206ENST00000360019 SLITRK4Q8IW52 837 aa17.56■□□□□ 0.4
CLN3-206ENST00000360019 ZNF501Q96CX3 271 aaPredicted RBP17.56■□□□□ 0.4
CLN3-206ENST00000360019 CNRIP1Q96F85 164 aaPredicted RBP17.56■□□□□ 0.4
CLN3-206ENST00000360019 GFM1Q96RP9 751 aaKnown RBP17.56■□□□□ 0.4
CLN3-206ENST00000360019 SH3GL1Q99961 368 aa17.56■□□□□ 0.4
CLN3-206ENST00000360019 NPLQ9BXD5 320 aaPredicted RBP17.56■□□□□ 0.4
CLN3-206ENST00000360019 PIF1Q9H611 641 aa17.56■□□□□ 0.4
CLN3-206ENST00000360019 KAT8Q9H7Z6 458 aaKnown RBP17.56■□□□□ 0.4
CLN3-206ENST00000360019 TAS2R9Q9NYW1 312 aa17.56■□□□□ 0.4
CLN3-206ENST00000360019 ZNF282Q9UDV7 671 aaPredicted RBP17.56■□□□□ 0.4
CLN3-206ENST00000360019 FTSJ1Q9UET6 329 aa17.56■□□□□ 0.4
CLN3-206ENST00000360019 VPS4AQ9UN37 437 aa17.56■□□□□ 0.4
CLN3-206ENST00000360019 PCDHGB4Q9UN71 923 aa17.56■□□□□ 0.4
CLN3-206ENST00000360019 HCN4Q9Y3Q4 1203 aa17.56■□□□□ 0.4
CLN3-206ENST00000360019 D6RAR5 112 aa17.56■□□□□ 0.4
CLN3-206ENST00000360019 CLIC1O00299 241 aa17.56■□□□□ 0.4
CLN3-206ENST00000360019 ERAL1O75616 437 aaKnown RBP17.56■□□□□ 0.4
CLN3-206ENST00000360019 NSA2O95478 260 aaKnown RBP17.56■□□□□ 0.4
CLN3-206ENST00000360019 GCGRP47871 477 aa17.56■□□□□ 0.4
CLN3-206ENST00000360019 SIM1P81133 766 aaPredicted RBP17.56■□□□□ 0.4
CLN3-206ENST00000360019 SHC2P98077 582 aa17.56■□□□□ 0.4
CLN3-206ENST00000360019 DUSP2Q05923 314 aa17.56■□□□□ 0.4
CLN3-206ENST00000360019 CCNIQ14094 377 aa17.56■□□□□ 0.4
CLN3-206ENST00000360019 CLPPQ16740 277 aaPredicted RBP17.56■□□□□ 0.4
CLN3-206ENST00000360019 SPATS1Q496A3 300 aa17.56■□□□□ 0.4
CLN3-206ENST00000360019 PRAMEF17Q5VTA0 474 aa17.56■□□□□ 0.4
CLN3-206ENST00000360019 ZNF551Q7Z340 670 aaPredicted RBP17.56■□□□□ 0.4
CLN3-206ENST00000360019 GPR155Q7Z3F1 870 aa17.56■□□□□ 0.4
CLN3-206ENST00000360019 IFNEQ86WN2 208 aa17.56■□□□□ 0.4
CLN3-206ENST00000360019 TTC29Q8NA56 475 aaPredicted RBP17.56■□□□□ 0.4
CLN3-206ENST00000360019 OR10A6Q8NH74 314 aa17.56■□□□□ 0.4
CLN3-206ENST00000360019 OR5P2Q8WZ92 322 aa17.56■□□□□ 0.4
CLN3-206ENST00000360019 ZBED6CLQ96FA7 236 aaPredicted RBP17.56■□□□□ 0.4
CLN3-206ENST00000360019 ZNF583Q96ND8 569 aa17.56■□□□□ 0.4
CLN3-206ENST00000360019 RPF2Q9H7B2 306 aaKnown RBP17.56■□□□□ 0.4
CLN3-206ENST00000360019 FGF21Q9NSA1 209 aa17.56■□□□□ 0.4
CLN3-206ENST00000360019 ACSS1Q9NUB1 689 aaPredicted RBP17.56■□□□□ 0.4
CLN3-206ENST00000360019 EP300Q09472 2414 aaPredicted RBP17.55■□□□□ 0.4
CLN3-206ENST00000360019 CYR61O00622 381 aa17.55■□□□□ 0.4
CLN3-206ENST00000360019 GP1BAP07359 652 aa17.55■□□□□ 0.4
CLN3-206ENST00000360019 EMP3P54852 163 aa17.55■□□□□ 0.4
CLN3-206ENST00000360019 MANFP55145 182 aaKnown RBP17.55■□□□□ 0.4
CLN3-206ENST00000360019 FLOT2Q14254 428 aa17.55■□□□□ 0.4
CLN3-206ENST00000360019 CEBPEQ15744 281 aa17.55■□□□□ 0.4
CLN3-206ENST00000360019 C10orf67Q8IYJ2 551 aa17.55■□□□□ 0.4
CLN3-206ENST00000360019 TMEM52Q8NDY8 209 aa17.55■□□□□ 0.4
CLN3-206ENST00000360019 SUN3Q8TAQ9 357 aa17.55■□□□□ 0.4
CLN3-206ENST00000360019 ZFP90Q8TF47 636 aa17.55■□□□□ 0.4
CLN3-206ENST00000360019 AMDHD1Q96NU7 426 aa17.55■□□□□ 0.4
CLN3-206ENST00000360019 PRRX2Q99811 253 aa17.55■□□□□ 0.4
CLN3-206ENST00000360019 KCTD14Q9BQ13 255 aaPredicted RBP17.55■□□□□ 0.4
CLN3-206ENST00000360019 ECSITQ9BQ95 431 aa17.55■□□□□ 0.4
CLN3-206ENST00000360019 GLIPR2Q9H4G4 154 aa17.55■□□□□ 0.4
CLN3-206ENST00000360019 CXorf36Q9H7Y0 433 aa17.55■□□□□ 0.4
CLN3-206ENST00000360019 TPT1P8Q9HAU6 139 aa17.55■□□□□ 0.4
CLN3-206ENST00000360019 PARD6AQ9NPB6 346 aa17.55■□□□□ 0.4
CLN3-206ENST00000360019 TMEM9BQ9NQ34 198 aa17.55■□□□□ 0.4
CLN3-206ENST00000360019 CUTCQ9NTM9 273 aa17.55■□□□□ 0.4
CLN3-206ENST00000360019 TMEM184BQ9Y519 407 aaPredicted RBP17.55■□□□□ 0.4
CLN3-206ENST00000360019 MYO1GB0I1T2 1018 aa17.54■□□□□ 0.4
CLN3-206ENST00000360019 DNAJA2O60884 412 aa17.54■□□□□ 0.4
CLN3-206ENST00000360019 BCAS2O75934 225 aaPredicted RBP17.54■□□□□ 0.4
CLN3-206ENST00000360019 C8orf89P0DMQ9 161 aa17.54■□□□□ 0.4
CLN3-206ENST00000360019 ITGA1P56199 1179 aa17.54■□□□□ 0.4
CLN3-206ENST00000360019 RAB38P57729 211 aa17.54■□□□□ 0.4
CLN3-206ENST00000360019 HSPB3Q12988 150 aa17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms