RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 KLF2Q9Y5W3 355 aaPredicted RBP17.78■□□□□ 0.44
CCDC28A-203ENST00000617445 ESYT3A0FGR9 886 aa17.77■□□□□ 0.44
CCDC28A-203ENST00000617445 NPIPA5E9PKD4 350 aa17.77■□□□□ 0.44
CCDC28A-203ENST00000617445 TGFBR3LH3BV60 316 aa17.77■□□□□ 0.44
CCDC28A-203ENST00000617445 UGDHO60701 494 aa17.77■□□□□ 0.44
CCDC28A-203ENST00000617445 ITGA10O75578 1167 aa17.77■□□□□ 0.44
CCDC28A-203ENST00000617445 URI1O94763 535 aaPredicted RBP17.77■□□□□ 0.44
CCDC28A-203ENST00000617445 KLHL2O95198 593 aa17.77■□□□□ 0.44
CCDC28A-203ENST00000617445 IFNA16P05015 189 aa17.77■□□□□ 0.44
CCDC28A-203ENST00000617445 PCNAP12004 261 aa17.77■□□□□ 0.44
CCDC28A-203ENST00000617445 HIST1H1TP22492 207 aaPredicted RBP17.77■□□□□ 0.44
CCDC28A-203ENST00000617445 ALDH18A1P54886 795 aaKnown RBP17.77■□□□□ 0.44
CCDC28A-203ENST00000617445 BMPR2Q13873 1038 aa17.77■□□□□ 0.44
CCDC28A-203ENST00000617445 SETDB1Q15047 1291 aa17.77■□□□□ 0.44
CCDC28A-203ENST00000617445 DEPDC1Q5TB30 811 aa17.77■□□□□ 0.44
CCDC28A-203ENST00000617445 KHDRBS2Q5VWX1 349 aaKnown RBP17.77■□□□□ 0.44
CCDC28A-203ENST00000617445 LIPJQ5W064 366 aa17.77■□□□□ 0.44
CCDC28A-203ENST00000617445 UBE3DQ7Z6J8 389 aa17.77■□□□□ 0.44
CCDC28A-203ENST00000617445 ZNF227Q86WZ6 799 aa17.77■□□□□ 0.44
CCDC28A-203ENST00000617445 SPPL2CQ8IUH8 684 aa17.77■□□□□ 0.44
CCDC28A-203ENST00000617445 ZNF808Q8N4W9 903 aaPredicted RBP17.77■□□□□ 0.44
CCDC28A-203ENST00000617445 KCTD4Q8WVF5 259 aa17.77■□□□□ 0.44
CCDC28A-203ENST00000617445 REPS1Q96D71 796 aa17.77■□□□□ 0.44
CCDC28A-203ENST00000617445 FUT8Q9BYC5 575 aa17.77■□□□□ 0.44
CCDC28A-203ENST00000617445 ACSS3Q9H6R3 686 aa17.77■□□□□ 0.44
CCDC28A-203ENST00000617445 RUBCNLQ9H714 662 aa17.77■□□□□ 0.44
CCDC28A-203ENST00000617445 SNX15Q9NRS6 342 aa17.77■□□□□ 0.44
CCDC28A-203ENST00000617445 MS4A12Q9NXJ0 267 aa17.77■□□□□ 0.44
CCDC28A-203ENST00000617445 NPIPA1Q9UND3 350 aa17.77■□□□□ 0.44
CCDC28A-203ENST00000617445 A0A096LPK6 155 aa17.76■□□□□ 0.43
CCDC28A-203ENST00000617445 HMX2A2RU54 273 aa17.76■□□□□ 0.43
CCDC28A-203ENST00000617445 HNRNPRO43390 633 aaKnown RBP17.76■□□□□ 0.43
CCDC28A-203ENST00000617445 KLK8O60259 260 aa17.76■□□□□ 0.43
CCDC28A-203ENST00000617445 TGFB1P01137 390 aa17.76■□□□□ 0.43
CCDC28A-203ENST00000617445 GFAPP14136 432 aa17.76■□□□□ 0.43
CCDC28A-203ENST00000617445 ZNF24P17028 368 aa17.76■□□□□ 0.43
CCDC28A-203ENST00000617445 AGAP20933 346 aa17.76■□□□□ 0.43
CCDC28A-203ENST00000617445 TYK2P29597 1187 aa17.76■□□□□ 0.43
CCDC28A-203ENST00000617445 GMPRP36959 345 aa17.76■□□□□ 0.43
CCDC28A-203ENST00000617445 PIK3CGP48736 1102 aa17.76■□□□□ 0.43
CCDC28A-203ENST00000617445 SERPINB8P50452 374 aa17.76■□□□□ 0.43
CCDC28A-203ENST00000617445 ST13P50502 369 aaKnown RBP17.76■□□□□ 0.43
CCDC28A-203ENST00000617445 SSR4P51571 173 aa17.76■□□□□ 0.43
CCDC28A-203ENST00000617445 PHEXP78562 749 aa17.76■□□□□ 0.43
CCDC28A-203ENST00000617445 XKRXQ6PP77 449 aa17.76■□□□□ 0.43
CCDC28A-203ENST00000617445 HSDL2Q6YN16 418 aa17.76■□□□□ 0.43
CCDC28A-203ENST00000617445 CLNKQ7Z7G1 428 aa17.76■□□□□ 0.43
CCDC28A-203ENST00000617445 CYP4Z2PQ8N1L4 340 aa17.76■□□□□ 0.43
CCDC28A-203ENST00000617445 MMGT1Q8N4V1 131 aa17.76■□□□□ 0.43
CCDC28A-203ENST00000617445 TEX9Q8N6V9 391 aa17.76■□□□□ 0.43
CCDC28A-203ENST00000617445 MNS1Q8NEH6 495 aa17.76■□□□□ 0.43
CCDC28A-203ENST00000617445 OR8K3Q8NH51 312 aa17.76■□□□□ 0.43
CCDC28A-203ENST00000617445 ITLN2Q8WWU7 325 aaPredicted RBP17.76■□□□□ 0.43
CCDC28A-203ENST00000617445 RGMAQ96B86 450 aa17.76■□□□□ 0.43
CCDC28A-203ENST00000617445 CCDC120Q96HB5 630 aa17.76■□□□□ 0.43
CCDC28A-203ENST00000617445 CSF3RQ99062 836 aa17.76■□□□□ 0.43
CCDC28A-203ENST00000617445 PSD3Q9NYI0 1048 aa17.76■□□□□ 0.43
CCDC28A-203ENST00000617445 ZNF223Q9UK11 482 aaPredicted RBP17.76■□□□□ 0.43
CCDC28A-203ENST00000617445 ESRRAP11474 423 aaPredicted RBP17.75■□□□□ 0.43
CCDC28A-203ENST00000617445 PTX3P26022 381 aaPredicted RBP17.75■□□□□ 0.43
CCDC28A-203ENST00000617445 PPP2R1BP30154 601 aa17.75■□□□□ 0.43
CCDC28A-203ENST00000617445 SSR2P43308 183 aa17.75■□□□□ 0.43
CCDC28A-203ENST00000617445 SRSF11Q05519 484 aaKnown RBP17.75■□□□□ 0.43
CCDC28A-203ENST00000617445 PCBP2Q15366 365 aaKnown RBP eCLIP17.75■□□□□ 0.43
CCDC28A-203ENST00000617445 UAP1Q16222 522 aaPredicted RBP17.75■□□□□ 0.43
CCDC28A-203ENST00000617445 PFKFB4Q16877 469 aa17.75■□□□□ 0.43
CCDC28A-203ENST00000617445 SP5Q6BEB4 398 aaPredicted RBP17.75■□□□□ 0.43
CCDC28A-203ENST00000617445 OR4C11Q6IEV9 310 aa17.75■□□□□ 0.43
CCDC28A-203ENST00000617445 ZNF793Q6ZN11 406 aa17.75■□□□□ 0.43
CCDC28A-203ENST00000617445 MRGPRGQ86SM5 289 aa17.75■□□□□ 0.43
CCDC28A-203ENST00000617445 EID3Q8N140 333 aa17.75■□□□□ 0.43
CCDC28A-203ENST00000617445 HUS1BQ8NHY5 278 aa17.75■□□□□ 0.43
CCDC28A-203ENST00000617445 PTPMT1Q8WUK0 201 aaPredicted RBP17.75■□□□□ 0.43
CCDC28A-203ENST00000617445 MRRFQ96E11 262 aaKnown RBP17.75■□□□□ 0.43
CCDC28A-203ENST00000617445 MAPKAP1Q9BPZ7 522 aa17.75■□□□□ 0.43
CCDC28A-203ENST00000617445 TIMMDC1Q9NPL8 285 aa17.75■□□□□ 0.43
CCDC28A-203ENST00000617445 MYOTQ9UBF9 498 aa17.75■□□□□ 0.43
CCDC28A-203ENST00000617445 TMCO1Q9UM00 188 aa17.75■□□□□ 0.43
CCDC28A-203ENST00000617445 MYO9AB2RTY4 2548 aa17.75■□□□□ 0.43
CCDC28A-203ENST00000617445 PRSS44E7EML9 344 aa17.74■□□□□ 0.43
CCDC28A-203ENST00000617445 H0YIV9 168 aa17.74■□□□□ 0.43
CCDC28A-203ENST00000617445 ALDOAP04075 364 aaKnown RBP17.74■□□□□ 0.43
CCDC28A-203ENST00000617445 TUBB4AP04350 444 aa17.74■□□□□ 0.43
CCDC28A-203ENST00000617445 COX7A2P14406 83 aa17.74■□□□□ 0.43
CCDC28A-203ENST00000617445 TNNI3P19429 210 aa17.74■□□□□ 0.43
CCDC28A-203ENST00000617445 CPN2P22792 545 aa17.74■□□□□ 0.43
CCDC28A-203ENST00000617445 TLX1P31314 330 aaPredicted RBP17.74■□□□□ 0.43
CCDC28A-203ENST00000617445 SERPINB9P50453 376 aa17.74■□□□□ 0.43
CCDC28A-203ENST00000617445 RAP1GDS1P52306 607 aa17.74■□□□□ 0.43
CCDC28A-203ENST00000617445 SMSP52788 366 aa17.74■□□□□ 0.43
CCDC28A-203ENST00000617445 IRF9Q00978 393 aa17.74■□□□□ 0.43
CCDC28A-203ENST00000617445 C3AR1Q16581 482 aa17.74■□□□□ 0.43
CCDC28A-203ENST00000617445 GLE1Q53GS7 698 aaKnown RBP17.74■□□□□ 0.43
CCDC28A-203ENST00000617445 TAOK1Q7L7X3 1001 aa17.74■□□□□ 0.43
CCDC28A-203ENST00000617445 SULF2Q8IWU5 870 aa17.74■□□□□ 0.43
CCDC28A-203ENST00000617445 ZCCHC7Q8N3Z6 543 aaKnown RBP17.74■□□□□ 0.43
CCDC28A-203ENST00000617445 CPSF7Q8N684 471 aaKnown RBP17.74■□□□□ 0.43
CCDC28A-203ENST00000617445 OR5L2Q8NGL0 311 aa17.74■□□□□ 0.43
CCDC28A-203ENST00000617445 C16orf52Q8NHV5 167 aa17.74■□□□□ 0.43
CCDC28A-203ENST00000617445 TANKQ92844 425 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 87.9 ms