RNA–Protein interactions for RNA: ENST00000543881.5

GABPB1-206, Transcript of GA binding protein transcription factor subunit beta 1, humanhuman

TSL 2 BASIC

Gene GABPB1, Length 1,450 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABPB1-206ENST00000543881 TFF3Q07654 80 aa11.04□□□□□ -0.64
GABPB1-206ENST00000543881 ILF2Q12905 390 aaKnown RBP11.04□□□□□ -0.64
GABPB1-206ENST00000543881 PDK4Q16654 411 aa11.04□□□□□ -0.64
GABPB1-206ENST00000543881 XKR6Q5GH73 641 aa11.04□□□□□ -0.64
GABPB1-206ENST00000543881 CES4AQ5XG92 561 aa11.04□□□□□ -0.64
GABPB1-206ENST00000543881 C16orf47Q6ZP98 133 aaPredicted RBP11.04□□□□□ -0.64
GABPB1-206ENST00000543881 UBE3DQ7Z6J8 389 aa11.04□□□□□ -0.64
GABPB1-206ENST00000543881 CMC1Q7Z7K0 106 aa11.04□□□□□ -0.64
GABPB1-206ENST00000543881 ISCA2Q86U28 154 aa11.04□□□□□ -0.64
GABPB1-206ENST00000543881 CD163Q86VB7 1156 aa11.04□□□□□ -0.64
GABPB1-206ENST00000543881 CTAGE3PQ8IX95 158 aa11.04□□□□□ -0.64
GABPB1-206ENST00000543881 MARVELD2Q8N4S9 558 aa11.04□□□□□ -0.64
GABPB1-206ENST00000543881 ARMC2Q8NEN0 867 aa11.04□□□□□ -0.64
GABPB1-206ENST00000543881 LILRB4Q8NHJ6 448 aa11.04□□□□□ -0.64
GABPB1-206ENST00000543881 FAM57AQ8TBR7 257 aa11.04□□□□□ -0.64
GABPB1-206ENST00000543881 FBXO25Q8TCJ0 367 aa11.04□□□□□ -0.64
GABPB1-206ENST00000543881 EXT2Q93063 718 aa11.04□□□□□ -0.64
GABPB1-206ENST00000543881 PTCD3Q96EY7 689 aaKnown RBP11.04□□□□□ -0.64
GABPB1-206ENST00000543881 SEC16BQ96JE7 1060 aa11.04□□□□□ -0.64
GABPB1-206ENST00000543881 F2RL3Q96RI0 385 aa11.04□□□□□ -0.64
GABPB1-206ENST00000543881 FOXC2Q99958 501 aa11.04□□□□□ -0.64
GABPB1-206ENST00000543881 DEFB126Q9BYW3 111 aa11.04□□□□□ -0.64
GABPB1-206ENST00000543881 UCK2Q9BZX2 261 aa11.04□□□□□ -0.64
GABPB1-206ENST00000543881 PITHD1Q9GZP4 211 aaPredicted RBP11.04□□□□□ -0.64
GABPB1-206ENST00000543881 CNOT10Q9H9A5 744 aaKnown RBP11.04□□□□□ -0.64
GABPB1-206ENST00000543881 PRDM7Q9NQW5 492 aa11.04□□□□□ -0.64
GABPB1-206ENST00000543881 PRTFDC1Q9NRG1 225 aa11.04□□□□□ -0.64
GABPB1-206ENST00000543881 CD274Q9NZQ7 290 aa11.04□□□□□ -0.64
GABPB1-206ENST00000543881 A0A1B0GTH9 108 aa11.03□□□□□ -0.64
GABPB1-206ENST00000543881 MYOCOSA0A1B0GUC4 107 aa11.03□□□□□ -0.64
GABPB1-206ENST00000543881 TMEM200CA6NKL6 621 aa11.03□□□□□ -0.64
GABPB1-206ENST00000543881 B3GALT2O43825 422 aa11.03□□□□□ -0.64
GABPB1-206ENST00000543881 CCNT2O60583 730 aaKnown RBP11.03□□□□□ -0.64
GABPB1-206ENST00000543881 TOXO94900 526 aa11.03□□□□□ -0.64
GABPB1-206ENST00000543881 TPOP07202 933 aa11.03□□□□□ -0.64
GABPB1-206ENST00000543881 GSTA2P09210 222 aa11.03□□□□□ -0.64
GABPB1-206ENST00000543881 SLC35E2BP0CK96 405 aa11.03□□□□□ -0.64
GABPB1-206ENST00000543881 DRD2P14416 443 aa11.03□□□□□ -0.64
GABPB1-206ENST00000543881 MSX1P28360 303 aa11.03□□□□□ -0.64
GABPB1-206ENST00000543881 PTGS2P35354 604 aa11.03□□□□□ -0.64
GABPB1-206ENST00000543881 CLCN2P51788 898 aa11.03□□□□□ -0.64
GABPB1-206ENST00000543881 LIM2P55344 173 aa11.03□□□□□ -0.64
GABPB1-206ENST00000543881 SLC13A2Q13183 592 aa11.03□□□□□ -0.64
GABPB1-206ENST00000543881 E2F2Q14209 437 aa11.03□□□□□ -0.64
GABPB1-206ENST00000543881 EFTUD2Q15029 972 aaKnown RBP eCLIP11.03□□□□□ -0.641e-5■□□□□ 9
GABPB1-206ENST00000543881 TERF2Q15554 542 aa11.03□□□□□ -0.64
GABPB1-206ENST00000543881 GRTP1Q5TC63 336 aa11.03□□□□□ -0.64
GABPB1-206ENST00000543881 TMEM211Q6ICI0 200 aa11.03□□□□□ -0.64
GABPB1-206ENST00000543881 TRIM40Q6P9F5 258 aa11.03□□□□□ -0.64
GABPB1-206ENST00000543881 ZNF793Q6ZN11 406 aa11.03□□□□□ -0.64
GABPB1-206ENST00000543881 CLNKQ7Z7G1 428 aa11.03□□□□□ -0.64
GABPB1-206ENST00000543881 PPM1NQ8N819 430 aa11.03□□□□□ -0.64
GABPB1-206ENST00000543881 FBF1Q8TES7 1133 aa11.03□□□□□ -0.64
GABPB1-206ENST00000543881 NCLNQ969V3 563 aa11.03□□□□□ -0.64
GABPB1-206ENST00000543881 SERINC2Q96SA4 455 aa11.03□□□□□ -0.64
GABPB1-206ENST00000543881 ATOH8Q96SQ7 321 aa11.03□□□□□ -0.64
GABPB1-206ENST00000543881 CD244Q9BZW8 370 aa11.03□□□□□ -0.64
GABPB1-206ENST00000543881 ALG9Q9H6U8 611 aa11.03□□□□□ -0.64
GABPB1-206ENST00000543881 LIN28AQ9H9Z2 209 aaKnown RBP11.03□□□□□ -0.64
GABPB1-206ENST00000543881 CCM2LQ9NUG4 571 aaPredicted RBP11.03□□□□□ -0.64
GABPB1-206ENST00000543881 KCMF1Q9P0J7 381 aa11.03□□□□□ -0.64
GABPB1-206ENST00000543881 KCNN3Q9UGI6 736 aa11.03□□□□□ -0.64
GABPB1-206ENST00000543881 FBXW2Q9UKT8 454 aa11.03□□□□□ -0.64
GABPB1-206ENST00000543881 RNF112Q9ULX5 631 aa11.03□□□□□ -0.64
GABPB1-206ENST00000543881 DAPP1Q9UN19 280 aa11.03□□□□□ -0.64
GABPB1-206ENST00000543881 RNF6Q9Y252 685 aa11.03□□□□□ -0.64
GABPB1-206ENST00000543881 HRH3Q9Y5N1 445 aa11.03□□□□□ -0.64
GABPB1-206ENST00000543881 DNHD1Q96M86 4753 aa11.03□□□□□ -0.64
GABPB1-206ENST00000543881 RTCAO00442 366 aaKnown RBP11.02□□□□□ -0.65
GABPB1-206ENST00000543881 FCHO1O14526 889 aa11.02□□□□□ -0.65
GABPB1-206ENST00000543881 ITGA10O75578 1167 aa11.02□□□□□ -0.65
GABPB1-206ENST00000543881 HOXD4P09016 255 aaPredicted RBP11.02□□□□□ -0.65
GABPB1-206ENST00000543881 ACANP16112 2415 aa11.02□□□□□ -0.65
GABPB1-206ENST00000543881 TFEBP19484 476 aa11.02□□□□□ -0.65
GABPB1-206ENST00000543881 SPRP35270 261 aaPredicted RBP11.02□□□□□ -0.65
GABPB1-206ENST00000543881 RFC3P40938 356 aa11.02□□□□□ -0.65
GABPB1-206ENST00000543881 CASP2P42575 452 aa11.02□□□□□ -0.65
GABPB1-206ENST00000543881 MAGEA4P43358 317 aa11.02□□□□□ -0.65
GABPB1-206ENST00000543881 MTTPP55157 894 aa11.02□□□□□ -0.65
GABPB1-206ENST00000543881 IRF8Q02556 426 aa11.02□□□□□ -0.65
GABPB1-206ENST00000543881 GUCY2DQ02846 1103 aa11.02□□□□□ -0.65
GABPB1-206ENST00000543881 CHIT1Q13231 466 aa11.02□□□□□ -0.65
GABPB1-206ENST00000543881 TBCCQ15814 346 aa11.02□□□□□ -0.65
GABPB1-206ENST00000543881 MDGA2Q7Z553 956 aa11.02□□□□□ -0.65
GABPB1-206ENST00000543881 CCDC25Q86WR0 208 aa11.02□□□□□ -0.65
GABPB1-206ENST00000543881 SULF2Q8IWU5 870 aa11.02□□□□□ -0.65
GABPB1-206ENST00000543881 ZNF595Q8IYB9 648 aa11.02□□□□□ -0.65
GABPB1-206ENST00000543881 ANP32BQ92688 251 aaKnown RBP11.02□□□□□ -0.65
GABPB1-206ENST00000543881 VMP1Q96GC9 406 aa11.02□□□□□ -0.65
GABPB1-206ENST00000543881 EFCAB11Q9BUY7 163 aa11.02□□□□□ -0.65
GABPB1-206ENST00000543881 MS4A8Q9BY19 250 aa11.02□□□□□ -0.65
GABPB1-206ENST00000543881 PHACTR1Q9C0D0 580 aa11.02□□□□□ -0.65
GABPB1-206ENST00000543881 GSX1Q9H4S2 264 aaPredicted RBP11.02□□□□□ -0.65
GABPB1-206ENST00000543881 KCNJ16Q9NPI9 418 aa11.02□□□□□ -0.65
GABPB1-206ENST00000543881 UTP11Q9Y3A2 253 aaKnown RBP11.02□□□□□ -0.65
GABPB1-206ENST00000543881 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.02□□□□□ -0.653e-6■■■■□ 21.7
GABPB1-206ENST00000543881 ABCA4P78363 2273 aa11.02□□□□□ -0.65
GABPB1-206ENST00000543881 A0A088AWK7 358 aa11.01□□□□□ -0.65
GABPB1-206ENST00000543881 UBXN8O00124 270 aa11.01□□□□□ -0.65
GABPB1-206ENST00000543881 CLDN4O14493 209 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms