RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 B4GALT2O60909 372 aa27.9■■■□□ 2.06
LIMCH1-211ENST00000509638 MYO1DO94832 1006 aa27.9■■■□□ 2.06
LIMCH1-211ENST00000509638 ANXA4P09525 319 aaPredicted RBP27.9■■■□□ 2.06
LIMCH1-211ENST00000509638 HNRNPFP52597 415 aaKnown RBP27.9■■■□□ 2.06
LIMCH1-211ENST00000509638 C6orf136Q5SQH8 315 aa27.9■■■□□ 2.06
LIMCH1-211ENST00000509638 FNDC5Q8NAU1 212 aa27.9■■■□□ 2.06
LIMCH1-211ENST00000509638 FCRL1Q96LA6 429 aa27.9■■■□□ 2.06
LIMCH1-211ENST00000509638 CCNL2Q96S94 520 aaPredicted RBP27.9■■■□□ 2.06
LIMCH1-211ENST00000509638 AKTIPQ9H8T0 292 aa27.9■■■□□ 2.06
LIMCH1-211ENST00000509638 FGFR1OP2Q9NVK5 253 aa27.9■■■□□ 2.06
LIMCH1-211ENST00000509638 MS4A12Q9NXJ0 267 aa27.9■■■□□ 2.06
LIMCH1-211ENST00000509638 MAP1BP46821 2468 aaKnown RBP27.9■■■□□ 2.06
LIMCH1-211ENST00000509638 TAF4O00268 1085 aa27.9■■■□□ 2.06
LIMCH1-211ENST00000509638 CYR61O00622 381 aa27.9■■■□□ 2.06
LIMCH1-211ENST00000509638 POLR3GO15318 223 aaPredicted RBP27.9■■■□□ 2.06
LIMCH1-211ENST00000509638 UMODP07911 640 aa27.9■■■□□ 2.06
LIMCH1-211ENST00000509638 VIMP08670 466 aaKnown RBP27.9■■■□□ 2.06
LIMCH1-211ENST00000509638 EPHA3P29320 983 aa27.9■■■□□ 2.06
LIMCH1-211ENST00000509638 ZNF763Q0D2J5 394 aa27.9■■■□□ 2.06
LIMCH1-211ENST00000509638 TMEM52Q8NDY8 209 aa27.9■■■□□ 2.06
LIMCH1-211ENST00000509638 C1orf50Q9BV19 199 aa27.9■■■□□ 2.06
LIMCH1-211ENST00000509638 VN1R1Q9GZP7 353 aa27.9■■■□□ 2.06
LIMCH1-211ENST00000509638 WDR55Q9H6Y2 383 aaPredicted RBP27.9■■■□□ 2.06
LIMCH1-211ENST00000509638 MRPS33Q9Y291 106 aaKnown RBP27.9■■■□□ 2.06
LIMCH1-211ENST00000509638 LOC400499M0QZD8 3231 aa27.89■■■□□ 2.06
LIMCH1-211ENST00000509638 GOLGA8QA0A0J9YX86 632 aa27.89■■■□□ 2.05
LIMCH1-211ENST00000509638 GOLGA8OA6NCC3 632 aa27.89■■■□□ 2.05
LIMCH1-211ENST00000509638 OR2W5A6NFC9 320 aa27.89■■■□□ 2.05
LIMCH1-211ENST00000509638 IDSB3KWA1 339 aa27.89■■■□□ 2.05
LIMCH1-211ENST00000509638 GOLGA8NF8WBI6 632 aa27.89■■■□□ 2.05
LIMCH1-211ENST00000509638 PRKRAO75569 313 aaKnown RBP27.89■■■□□ 2.05
LIMCH1-211ENST00000509638 AIFM1O95831 613 aa27.89■■■□□ 2.05
LIMCH1-211ENST00000509638 NR2F6P10588 404 aa27.89■■■□□ 2.05
LIMCH1-211ENST00000509638 WT1P19544 449 aaPredicted RBP27.89■■■□□ 2.05
LIMCH1-211ENST00000509638 BUD31P41223 144 aaPredicted RBP27.89■■■□□ 2.05
LIMCH1-211ENST00000509638 EFNA3P52797 238 aa27.89■■■□□ 2.05
LIMCH1-211ENST00000509638 IL10RAQ13651 578 aa27.89■■■□□ 2.05
LIMCH1-211ENST00000509638 TUBB8Q3ZCM7 444 aa27.89■■■□□ 2.05
LIMCH1-211ENST00000509638 C18orf63Q68DL7 685 aa27.89■■■□□ 2.05
LIMCH1-211ENST00000509638 CDC26Q8NHZ8 85 aa27.89■■■□□ 2.05
LIMCH1-211ENST00000509638 C3orf18Q9UK00 162 aa27.89■■■□□ 2.05
LIMCH1-211ENST00000509638 A0A1W2PR48 441 aa27.88■■■□□ 2.05
LIMCH1-211ENST00000509638 PROM1O43490 865 aa27.88■■■□□ 2.05
LIMCH1-211ENST00000509638 DIAPH2O60879 1101 aa27.88■■■□□ 2.05
LIMCH1-211ENST00000509638 VPS4BO75351 444 aa27.88■■■□□ 2.05
LIMCH1-211ENST00000509638 PRR35P0CG20 571 aa27.88■■■□□ 2.05
LIMCH1-211ENST00000509638 ALOX15P16050 662 aaPredicted RBP27.88■■■□□ 2.05
LIMCH1-211ENST00000509638 SLC9B1Q4ZJI4 515 aa27.88■■■□□ 2.05
LIMCH1-211ENST00000509638 RIPOR1Q6ZS17 1223 aa27.88■■■□□ 2.05
LIMCH1-211ENST00000509638 THOC1Q96FV9 657 aaKnown RBP27.88■■■□□ 2.05
LIMCH1-211ENST00000509638 SLC45A3Q96JT2 553 aa27.88■■■□□ 2.05
LIMCH1-211ENST00000509638 CREG1O75629 220 aa27.87■■■□□ 2.05
LIMCH1-211ENST00000509638 HEXBP07686 556 aa27.87■■■□□ 2.05
LIMCH1-211ENST00000509638 TAS2R50P59544 299 aa27.87■■■□□ 2.05
LIMCH1-211ENST00000509638 TRA2BP62995 288 aaKnown RBP27.87■■■□□ 2.05
LIMCH1-211ENST00000509638 NDUFAF5Q5TEU4 345 aa27.87■■■□□ 2.05
LIMCH1-211ENST00000509638 LRRC69Q6ZNQ3 347 aa27.87■■■□□ 2.05
LIMCH1-211ENST00000509638 KDF1Q8NAX2 398 aaPredicted RBP27.87■■■□□ 2.05
LIMCH1-211ENST00000509638 C16orf78Q8WTQ4 265 aa27.87■■■□□ 2.05
LIMCH1-211ENST00000509638 NPHS2Q9NP85 383 aa27.87■■■□□ 2.05
LIMCH1-211ENST00000509638 GUCY1B2O75343 617 aa27.86■■■□□ 2.05
LIMCH1-211ENST00000509638 SDC1P18827 310 aa27.86■■■□□ 2.05
LIMCH1-211ENST00000509638 TLX1P31314 330 aaPredicted RBP27.86■■■□□ 2.05
LIMCH1-211ENST00000509638 AQP5P55064 265 aa27.86■■■□□ 2.05
LIMCH1-211ENST00000509638 RHAGQ02094 409 aa27.86■■■□□ 2.05
LIMCH1-211ENST00000509638 TLE3Q04726 772 aa27.86■■■□□ 2.05
LIMCH1-211ENST00000509638 MED25Q71SY5 747 aa27.86■■■□□ 2.05
LIMCH1-211ENST00000509638 ZNF595Q8IYB9 648 aa27.86■■■□□ 2.05
LIMCH1-211ENST00000509638 MMP21Q8N119 569 aa27.86■■■□□ 2.05
LIMCH1-211ENST00000509638 TM4SF18Q96CE8 201 aa27.86■■■□□ 2.05
LIMCH1-211ENST00000509638 MAELQ96JY0 434 aaKnown RBP27.86■■■□□ 2.05
LIMCH1-211ENST00000509638 SSUH2Q9Y2M2 353 aa27.86■■■□□ 2.05
LIMCH1-211ENST00000509638 GLOD5A6NK44 160 aa27.86■■■□□ 2.05
LIMCH1-211ENST00000509638 RECKO95980 971 aa27.86■■■□□ 2.05
LIMCH1-211ENST00000509638 IL3P08700 152 aa27.86■■■□□ 2.05
LIMCH1-211ENST00000509638 MAOAP21397 527 aa27.86■■■□□ 2.05
LIMCH1-211ENST00000509638 TACR1P25103 407 aa27.86■■■□□ 2.05
LIMCH1-211ENST00000509638 MAPK1P28482 360 aa27.86■■■□□ 2.05
LIMCH1-211ENST00000509638 ERVK-8P63133 956 aa27.86■■■□□ 2.05
LIMCH1-211ENST00000509638 BTG2P78543 158 aa27.86■■■□□ 2.05
LIMCH1-211ENST00000509638 EPGNQ6UW88 154 aa27.86■■■□□ 2.05
LIMCH1-211ENST00000509638 QSOX2Q6ZRP7 698 aa27.86■■■□□ 2.05
LIMCH1-211ENST00000509638 LARP4Q71RC2 724 aaKnown RBP eCLIP27.86■■■□□ 2.05
LIMCH1-211ENST00000509638 LRRC34Q8IZ02 419 aa27.86■■■□□ 2.05
LIMCH1-211ENST00000509638 ZNF317Q96PQ6 595 aaPredicted RBP27.86■■■□□ 2.05
LIMCH1-211ENST00000509638 RPF2Q9H7B2 306 aaKnown RBP27.86■■■□□ 2.05
LIMCH1-211ENST00000509638 WDR41Q9HAD4 459 aa27.86■■■□□ 2.05
LIMCH1-211ENST00000509638 DSPP15924 2871 aaKnown RBP27.86■■■□□ 2.05
LIMCH1-211ENST00000509638 PRMT3O60678 531 aa27.85■■■□□ 2.05
LIMCH1-211ENST00000509638 TGDSO95455 350 aa27.85■■■□□ 2.05
LIMCH1-211ENST00000509638 BCKDHAP12694 445 aa27.85■■■□□ 2.05
LIMCH1-211ENST00000509638 ACPPP15309 386 aa27.85■■■□□ 2.05
LIMCH1-211ENST00000509638 EMP2P54851 167 aa27.85■■■□□ 2.05
LIMCH1-211ENST00000509638 SLC13A2Q13183 592 aa27.85■■■□□ 2.05
LIMCH1-211ENST00000509638 TSLPQ969D9 159 aa27.85■■■□□ 2.05
LIMCH1-211ENST00000509638 MYNNQ9NPC7 610 aa27.85■■■□□ 2.05
LIMCH1-211ENST00000509638 PRTFDC1Q9NRG1 225 aa27.85■■■□□ 2.05
LIMCH1-211ENST00000509638 SEMA3GQ9NS98 782 aa27.85■■■□□ 2.05
LIMCH1-211ENST00000509638 CLDN4O14493 209 aa27.84■■■□□ 2.05
LIMCH1-211ENST00000509638 LBPP18428 481 aa27.84■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms