RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 BNC2Q6ZN30 1099 aaPredicted RBP16.53■□□□□ 0.24
HDDC3-201ENST00000330334 GPALPP1Q8IXQ4 340 aa16.53■□□□□ 0.24
HDDC3-201ENST00000330334 ZNF808Q8N4W9 903 aaPredicted RBP16.53■□□□□ 0.24
HDDC3-201ENST00000330334 OR8K3Q8NH51 312 aa16.53■□□□□ 0.24
HDDC3-201ENST00000330334 OR14A16Q8NHC5 309 aa16.53■□□□□ 0.24
HDDC3-201ENST00000330334 PTPMT1Q8WUK0 201 aaPredicted RBP16.53■□□□□ 0.24
HDDC3-201ENST00000330334 KCTD4Q8WVF5 259 aa16.53■□□□□ 0.24
HDDC3-201ENST00000330334 NCLNQ969V3 563 aa16.53■□□□□ 0.24
HDDC3-201ENST00000330334 CCDC120Q96HB5 630 aa16.53■□□□□ 0.24
HDDC3-201ENST00000330334 CSF3RQ99062 836 aa16.53■□□□□ 0.24
HDDC3-201ENST00000330334 ALOXE3Q9BYJ1 711 aa16.53■□□□□ 0.24
HDDC3-201ENST00000330334 ACSS3Q9H6R3 686 aa16.53■□□□□ 0.24
HDDC3-201ENST00000330334 SNX15Q9NRS6 342 aa16.53■□□□□ 0.24
HDDC3-201ENST00000330334 MS4A12Q9NXJ0 267 aa16.53■□□□□ 0.24
HDDC3-201ENST00000330334 FBXW2Q9UKT8 454 aa16.53■□□□□ 0.24
HDDC3-201ENST00000330334 SPACA6W5XKT8 324 aa16.53■□□□□ 0.24
HDDC3-201ENST00000330334 CROCCQ5TZA2 2017 aa16.53■□□□□ 0.24
HDDC3-201ENST00000330334 CACNA1DQ01668 2161 aa16.53■□□□□ 0.24
HDDC3-201ENST00000330334 A0A096LPK6 155 aa16.52■□□□□ 0.24
HDDC3-201ENST00000330334 TMEM200CA6NKL6 621 aa16.52■□□□□ 0.24
HDDC3-201ENST00000330334 NPIPA5E9PKD4 350 aa16.52■□□□□ 0.24
HDDC3-201ENST00000330334 ITGA10O75578 1167 aa16.52■□□□□ 0.24
HDDC3-201ENST00000330334 TGFB1P01137 390 aa16.52■□□□□ 0.24
HDDC3-201ENST00000330334 ZNF24P17028 368 aa16.52■□□□□ 0.24
HDDC3-201ENST00000330334 PPP2R1BP30154 601 aa16.52■□□□□ 0.24
HDDC3-201ENST00000330334 STX4Q12846 297 aa16.52■□□□□ 0.24
HDDC3-201ENST00000330334 SETDB1Q15047 1291 aa16.52■□□□□ 0.24
HDDC3-201ENST00000330334 PCBP2Q15366 365 aaKnown RBP eCLIP16.52■□□□□ 0.24
HDDC3-201ENST00000330334 KHDRBS2Q5VWX1 349 aaKnown RBP16.52■□□□□ 0.24
HDDC3-201ENST00000330334 XKRXQ6PP77 449 aa16.52■□□□□ 0.24
HDDC3-201ENST00000330334 GHDCQ8N2G8 530 aa16.52■□□□□ 0.24
HDDC3-201ENST00000330334 MMGT1Q8N4V1 131 aa16.52■□□□□ 0.24
HDDC3-201ENST00000330334 TMEM156Q8N614 296 aa16.52■□□□□ 0.24
HDDC3-201ENST00000330334 MAGED4Q96JG8 741 aa16.52■□□□□ 0.24
HDDC3-201ENST00000330334 GPR78Q96P69 363 aa16.52■□□□□ 0.24
HDDC3-201ENST00000330334 MAPKAP1Q9BPZ7 522 aa16.52■□□□□ 0.24
HDDC3-201ENST00000330334 PSD3Q9NYI0 1048 aa16.52■□□□□ 0.24
HDDC3-201ENST00000330334 MYOTQ9UBF9 498 aa16.52■□□□□ 0.24
HDDC3-201ENST00000330334 MTRF1LQ9UGC7 380 aaKnown RBP16.52■□□□□ 0.24
HDDC3-201ENST00000330334 NPIPA1Q9UND3 350 aa16.52■□□□□ 0.24
HDDC3-201ENST00000330334 PCDHGA11Q9Y5H2 935 aa16.52■□□□□ 0.24
HDDC3-201ENST00000330334 TNPO3Q9Y5L0 923 aaKnown RBP16.52■□□□□ 0.24
HDDC3-201ENST00000330334 LRBAP50851 2863 aa16.52■□□□□ 0.23
HDDC3-201ENST00000330334 H0YIV9 168 aa16.51■□□□□ 0.23
HDDC3-201ENST00000330334 HNRNPRO43390 633 aaKnown RBP16.51■□□□□ 0.23
HDDC3-201ENST00000330334 ALDOAP04075 364 aaKnown RBP16.51■□□□□ 0.23
HDDC3-201ENST00000330334 IFNA16P05015 189 aa16.51■□□□□ 0.23
HDDC3-201ENST00000330334 TYK2P29597 1187 aa16.51■□□□□ 0.23
HDDC3-201ENST00000330334 SSR4P51571 173 aa16.51■□□□□ 0.23
HDDC3-201ENST00000330334 BMPR2Q13873 1038 aa16.51■□□□□ 0.23
HDDC3-201ENST00000330334 C3AR1Q16581 482 aa16.51■□□□□ 0.23
HDDC3-201ENST00000330334 PFKFB4Q16877 469 aa16.51■□□□□ 0.23
HDDC3-201ENST00000330334 RNFT1Q5M7Z0 435 aa16.51■□□□□ 0.23
HDDC3-201ENST00000330334 SP5Q6BEB4 398 aaPredicted RBP16.51■□□□□ 0.23
HDDC3-201ENST00000330334 OR4C11Q6IEV9 310 aa16.51■□□□□ 0.23
HDDC3-201ENST00000330334 KLC3Q6P597 504 aa16.51■□□□□ 0.23
HDDC3-201ENST00000330334 HSDL2Q6YN16 418 aa16.51■□□□□ 0.23
HDDC3-201ENST00000330334 CLNKQ7Z7G1 428 aa16.51■□□□□ 0.23
HDDC3-201ENST00000330334 MRGPRGQ86SM5 289 aa16.51■□□□□ 0.23
HDDC3-201ENST00000330334 TICAM1Q8IUC6 712 aa16.51■□□□□ 0.23
HDDC3-201ENST00000330334 SULF2Q8IWU5 870 aa16.51■□□□□ 0.23
HDDC3-201ENST00000330334 CYP4Z2PQ8N1L4 340 aa16.51■□□□□ 0.23
HDDC3-201ENST00000330334 CPSF7Q8N684 471 aaKnown RBP16.51■□□□□ 0.23
HDDC3-201ENST00000330334 TEX9Q8N6V9 391 aa16.51■□□□□ 0.23
HDDC3-201ENST00000330334 ZFP62Q8NB50 900 aaPredicted RBP16.51■□□□□ 0.23
HDDC3-201ENST00000330334 C16orf52Q8NHV5 167 aa16.51■□□□□ 0.23
HDDC3-201ENST00000330334 HUS1BQ8NHY5 278 aa16.51■□□□□ 0.23
HDDC3-201ENST00000330334 RGMAQ96B86 450 aa16.51■□□□□ 0.23
HDDC3-201ENST00000330334 CENPKQ9BS16 269 aa16.51■□□□□ 0.23
HDDC3-201ENST00000330334 NINJ2Q9NZG7 142 aa16.51■□□□□ 0.23
HDDC3-201ENST00000330334 ANGPTL3Q9Y5C1 460 aa16.51■□□□□ 0.23
HDDC3-201ENST00000330334 MYO9AB2RTY4 2548 aa16.51■□□□□ 0.23
HDDC3-201ENST00000330334 CREBBPQ92793 2442 aa16.5■□□□□ 0.23
HDDC3-201ENST00000330334 URI1O94763 535 aaPredicted RBP16.5■□□□□ 0.23
HDDC3-201ENST00000330334 PCNAP12004 261 aa16.5■□□□□ 0.23
HDDC3-201ENST00000330334 GFAPP14136 432 aa16.5■□□□□ 0.23
HDDC3-201ENST00000330334 PTX3P26022 381 aaPredicted RBP16.5■□□□□ 0.23
HDDC3-201ENST00000330334 PIK3CGP48736 1102 aa16.5■□□□□ 0.23
HDDC3-201ENST00000330334 SERPINB8P50452 374 aa16.5■□□□□ 0.23
HDDC3-201ENST00000330334 IGLV3-21P80748 117 aaPredicted RBP16.5■□□□□ 0.23
HDDC3-201ENST00000330334 IRF9Q00978 393 aa16.5■□□□□ 0.23
HDDC3-201ENST00000330334 CHERPQ8IWX8 916 aaKnown RBP16.5■□□□□ 0.23
HDDC3-201ENST00000330334 ZCCHC7Q8N3Z6 543 aaKnown RBP16.5■□□□□ 0.23
HDDC3-201ENST00000330334 SLC44A1Q8WWI5 657 aa16.5■□□□□ 0.23
HDDC3-201ENST00000330334 TANKQ92844 425 aa16.5■□□□□ 0.23
HDDC3-201ENST00000330334 ISL2Q96A47 359 aa16.5■□□□□ 0.23
HDDC3-201ENST00000330334 ANKRD9Q96BM1 317 aaPredicted RBP16.5■□□□□ 0.23
HDDC3-201ENST00000330334 REPS1Q96D71 796 aa16.5■□□□□ 0.23
HDDC3-201ENST00000330334 TSPAN10Q9H1Z9 355 aaPredicted RBP16.5■□□□□ 0.23
HDDC3-201ENST00000330334 OR51B5Q9H339 312 aa16.5■□□□□ 0.23
HDDC3-201ENST00000330334 TIMMDC1Q9NPL8 285 aa16.5■□□□□ 0.23
HDDC3-201ENST00000330334 RYDENQ9NUL5 291 aaKnown RBP16.5■□□□□ 0.23
HDDC3-201ENST00000330334 PRSS44E7EML9 344 aa16.49■□□□□ 0.23
HDDC3-201ENST00000330334 RTCAO00442 366 aaKnown RBP16.49■□□□□ 0.23
HDDC3-201ENST00000330334 PEX1O43933 1283 aa16.49■□□□□ 0.23
HDDC3-201ENST00000330334 PRKNO60260 465 aaPredicted RBP16.49■□□□□ 0.23
HDDC3-201ENST00000330334 OR2J2O76002 312 aa16.49■□□□□ 0.23
HDDC3-201ENST00000330334 ESRRAP11474 423 aaPredicted RBP16.49■□□□□ 0.23
HDDC3-201ENST00000330334 CPN2P22792 545 aa16.49■□□□□ 0.23
HDDC3-201ENST00000330334 SSR2P43308 183 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 102.4 ms