RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 LIM2P55344 173 aa17.81■□□□□ 0.44
CCDC28A-203ENST00000617445 PMP22Q01453 160 aa17.81■□□□□ 0.44
CCDC28A-203ENST00000617445 DLG1Q12959 904 aa17.81■□□□□ 0.44
CCDC28A-203ENST00000617445 MAPKAPK3Q16644 382 aa17.81■□□□□ 0.44
CCDC28A-203ENST00000617445 MED27Q6P2C8 311 aa17.81■□□□□ 0.44
CCDC28A-203ENST00000617445 GALNTL5Q7Z4T8 443 aa17.81■□□□□ 0.44
CCDC28A-203ENST00000617445 LAS2Q8IYD9 372 aa17.81■□□□□ 0.44
CCDC28A-203ENST00000617445 POGLUT1Q8NBL1 392 aa17.81■□□□□ 0.44
CCDC28A-203ENST00000617445 EXT2Q93063 718 aa17.81■□□□□ 0.44
CCDC28A-203ENST00000617445 GPR137Q96N19 417 aa17.81■□□□□ 0.44
CCDC28A-203ENST00000617445 FRMD6Q96NE9 622 aa17.81■□□□□ 0.44
CCDC28A-203ENST00000617445 F2RL3Q96RI0 385 aa17.81■□□□□ 0.44
CCDC28A-203ENST00000617445 CCDC77Q9BR77 488 aa17.81■□□□□ 0.44
CCDC28A-203ENST00000617445 PRDM7Q9NQW5 492 aa17.81■□□□□ 0.44
CCDC28A-203ENST00000617445 PNO1Q9NRX1 252 aaKnown RBP17.81■□□□□ 0.44
CCDC28A-203ENST00000617445 IGSF5Q9NSI5 407 aa17.81■□□□□ 0.44
CCDC28A-203ENST00000617445 ZDHHC18Q9NUE0 388 aa17.81■□□□□ 0.44
CCDC28A-203ENST00000617445 SPACA6W5XKT8 324 aa17.81■□□□□ 0.44
CCDC28A-203ENST00000617445 CELSR2Q9HCU4 2923 aa17.8■□□□□ 0.44
CCDC28A-203ENST00000617445 TRBV11-1A0A0K0K1C0 115 aa17.8■□□□□ 0.44
CCDC28A-203ENST00000617445 NME2P1O60361 137 aa17.8■□□□□ 0.44
CCDC28A-203ENST00000617445 SLC19A2O60779 497 aa17.8■□□□□ 0.44
CCDC28A-203ENST00000617445 EPB42P16452 691 aa17.8■□□□□ 0.44
CCDC28A-203ENST00000617445 NME2P22392 152 aa17.8■□□□□ 0.44
CCDC28A-203ENST00000617445 COL8A1P27658 744 aa17.8■□□□□ 0.44
CCDC28A-203ENST00000617445 MSH2P43246 934 aa17.8■□□□□ 0.44
CCDC28A-203ENST00000617445 ACAP2Q15057 778 aa17.8■□□□□ 0.44
CCDC28A-203ENST00000617445 ELAVL1Q15717 326 aaKnown RBP17.8■□□□□ 0.44
CCDC28A-203ENST00000617445 WHAMMP3Q1A5X7 153 aa17.8■□□□□ 0.44
CCDC28A-203ENST00000617445 RPTNQ6XPR3 784 aa17.8■□□□□ 0.44
CCDC28A-203ENST00000617445 ZNF473Q8WTR7 871 aaKnown RBP17.8■□□□□ 0.44
CCDC28A-203ENST00000617445 DAZLQ92904 295 aaKnown RBP17.8■□□□□ 0.44
CCDC28A-203ENST00000617445 NXNL1Q96CM4 212 aa17.8■□□□□ 0.44
CCDC28A-203ENST00000617445 CMTM7Q96FZ5 175 aa17.8■□□□□ 0.44
CCDC28A-203ENST00000617445 MS4A8Q9BY19 250 aa17.8■□□□□ 0.44
CCDC28A-203ENST00000617445 HES7Q9BYE0 225 aa17.8■□□□□ 0.44
CCDC28A-203ENST00000617445 KLF13Q9Y2Y9 288 aaPredicted RBP17.8■□□□□ 0.44
CCDC28A-203ENST00000617445 CLDN16Q9Y5I7 305 aa17.8■□□□□ 0.44
CCDC28A-203ENST00000617445 UBXN8O00124 270 aa17.79■□□□□ 0.44
CCDC28A-203ENST00000617445 CCL21O00585 134 aa17.79■□□□□ 0.44
CCDC28A-203ENST00000617445 ZFAND5O76080 213 aa17.79■□□□□ 0.44
CCDC28A-203ENST00000617445 SCELO95171 688 aa17.79■□□□□ 0.44
CCDC28A-203ENST00000617445 CERS1P27544 350 aa17.79■□□□□ 0.44
CCDC28A-203ENST00000617445 GPR143P51810 404 aa17.79■□□□□ 0.44
CCDC28A-203ENST00000617445 ARFIP1P53367 373 aa17.79■□□□□ 0.44
CCDC28A-203ENST00000617445 SLC7A5Q01650 507 aa17.79■□□□□ 0.44
CCDC28A-203ENST00000617445 ART3Q13508 389 aa17.79■□□□□ 0.44
CCDC28A-203ENST00000617445 SERTAD2Q14140 314 aa17.79■□□□□ 0.44
CCDC28A-203ENST00000617445 AP5B1Q2VPB7 878 aa17.79■□□□□ 0.44
CCDC28A-203ENST00000617445 MROH9Q5TGP6 573 aa17.79■□□□□ 0.44
CCDC28A-203ENST00000617445 ZNF468Q5VIY5 522 aaPredicted RBP17.79■□□□□ 0.44
CCDC28A-203ENST00000617445 METTL2BQ6P1Q9 378 aaKnown RBP17.79■□□□□ 0.44
CCDC28A-203ENST00000617445 KLC3Q6P597 504 aa17.79■□□□□ 0.44
CCDC28A-203ENST00000617445 PNPLA5Q7Z6Z6 429 aaPredicted RBP17.79■□□□□ 0.44
CCDC28A-203ENST00000617445 RELL1Q8IUW5 271 aa17.79■□□□□ 0.44
CCDC28A-203ENST00000617445 FAM47BQ8NA70 645 aa17.79■□□□□ 0.44
CCDC28A-203ENST00000617445 CENPKQ9BS16 269 aa17.79■□□□□ 0.44
CCDC28A-203ENST00000617445 LRRC1Q9BTT6 524 aa17.79■□□□□ 0.44
CCDC28A-203ENST00000617445 KCMF1Q9P0J7 381 aa17.79■□□□□ 0.44
CCDC28A-203ENST00000617445 VTI1BQ9UEU0 232 aa17.79■□□□□ 0.44
CCDC28A-203ENST00000617445 MTRF1LQ9UGC7 380 aaKnown RBP17.79■□□□□ 0.44
CCDC28A-203ENST00000617445 FBXW2Q9UKT8 454 aa17.79■□□□□ 0.44
CCDC28A-203ENST00000617445 ZNF835Q9Y2P0 537 aa17.79■□□□□ 0.44
CCDC28A-203ENST00000617445 YARS2Q9Y2Z4 477 aaKnown RBP17.79■□□□□ 0.44
CCDC28A-203ENST00000617445 TSC22D4Q9Y3Q8 395 aa17.79■□□□□ 0.44
CCDC28A-203ENST00000617445 CLCA3PQ9Y6N3 262 aa17.79■□□□□ 0.44
CCDC28A-203ENST00000617445 KLRC4-KLRK1H3BQV0 150 aa17.78■□□□□ 0.44
CCDC28A-203ENST00000617445 ASNA1O43681 348 aa17.78■□□□□ 0.44
CCDC28A-203ENST00000617445 C2P06681 752 aa17.78■□□□□ 0.44
CCDC28A-203ENST00000617445 MTHFD2P13995 350 aa17.78■□□□□ 0.44
CCDC28A-203ENST00000617445 ATP5A1P25705 553 aaKnown RBP17.78■□□□□ 0.44
CCDC28A-203ENST00000617445 PIK3CBP42338 1070 aa17.78■□□□□ 0.44
CCDC28A-203ENST00000617445 HNRNPFP52597 415 aaKnown RBP17.78■□□□□ 0.44
CCDC28A-203ENST00000617445 STX4Q12846 297 aa17.78■□□□□ 0.44
CCDC28A-203ENST00000617445 BIKQ13323 160 aa17.78■□□□□ 0.44
CCDC28A-203ENST00000617445 NAA30Q147X3 362 aaPredicted RBP17.78■□□□□ 0.44
CCDC28A-203ENST00000617445 ZNF787Q6DD87 383 aa17.78■□□□□ 0.44
CCDC28A-203ENST00000617445 ADNP2Q6IQ32 1131 aa17.78■□□□□ 0.44
CCDC28A-203ENST00000617445 GRHL2Q6ISB3 625 aa17.78■□□□□ 0.44
CCDC28A-203ENST00000617445 BNC2Q6ZN30 1099 aaPredicted RBP17.78■□□□□ 0.44
CCDC28A-203ENST00000617445 Q6ZPB1 254 aaPredicted RBP17.78■□□□□ 0.44
CCDC28A-203ENST00000617445 SIAH3Q8IW03 269 aa17.78■□□□□ 0.44
CCDC28A-203ENST00000617445 GPALPP1Q8IXQ4 340 aa17.78■□□□□ 0.44
CCDC28A-203ENST00000617445 CENPLQ8N0S6 344 aaPredicted RBP17.78■□□□□ 0.44
CCDC28A-203ENST00000617445 GHDCQ8N2G8 530 aa17.78■□□□□ 0.44
CCDC28A-203ENST00000617445 TMEM156Q8N614 296 aa17.78■□□□□ 0.44
CCDC28A-203ENST00000617445 ACOT4Q8N9L9 421 aa17.78■□□□□ 0.44
CCDC28A-203ENST00000617445 MORN4Q8NDC4 146 aa17.78■□□□□ 0.44
CCDC28A-203ENST00000617445 TMEM52Q8NDY8 209 aa17.78■□□□□ 0.44
CCDC28A-203ENST00000617445 OR7G3Q8NG95 312 aa17.78■□□□□ 0.44
CCDC28A-203ENST00000617445 OR14A16Q8NHC5 309 aa17.78■□□□□ 0.44
CCDC28A-203ENST00000617445 NCLNQ969V3 563 aa17.78■□□□□ 0.44
CCDC28A-203ENST00000617445 MAGED4Q96JG8 741 aa17.78■□□□□ 0.44
CCDC28A-203ENST00000617445 ALOXE3Q9BYJ1 711 aa17.78■□□□□ 0.44
CCDC28A-203ENST00000617445 PRM3Q9NNZ6 103 aa17.78■□□□□ 0.44
CCDC28A-203ENST00000617445 ENTPD4Q9Y227 616 aa17.78■□□□□ 0.44
CCDC28A-203ENST00000617445 ASB1Q9Y576 335 aa17.78■□□□□ 0.44
CCDC28A-203ENST00000617445 ANGPTL3Q9Y5C1 460 aa17.78■□□□□ 0.44
CCDC28A-203ENST00000617445 PCDHGA11Q9Y5H2 935 aa17.78■□□□□ 0.44
CCDC28A-203ENST00000617445 TNPO3Q9Y5L0 923 aaKnown RBP17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms