RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 MMP27Q9H306 513 aa2.69□□□□□ -1.98
SCFD1-219ENST00000556413 BOLA2Q9H3K6 86 aa2.69□□□□□ -1.98
SCFD1-219ENST00000556413 MTHFD2LQ9H903 347 aaPredicted RBP2.69□□□□□ -1.98
SCFD1-219ENST00000556413 RAVER2Q9HCJ3 691 aaKnown RBP2.69□□□□□ -1.98
SCFD1-219ENST00000556413 PDE7BQ9NP56 450 aa2.69□□□□□ -1.98
SCFD1-219ENST00000556413 LTBP2Q14767 1821 aa2.69□□□□□ -1.98
SCFD1-219ENST00000556413 ATAD5Q96QE3 1844 aa2.69□□□□□ -1.98
SCFD1-219ENST00000556413 PTPRFP10586 1907 aa2.69□□□□□ -1.98
SCFD1-219ENST00000556413 MYH2Q9UKX2 1941 aa2.69□□□□□ -1.98
SCFD1-219ENST00000556413 ASTN1O14525 1302 aa2.68□□□□□ -1.98
SCFD1-219ENST00000556413 DOCK3Q8IZD9 2030 aa2.68□□□□□ -1.98
SCFD1-219ENST00000556413 REV3LO60673 3130 aa2.68□□□□□ -1.98
SCFD1-219ENST00000556413 C19orf81C9J6K1 198 aa2.68□□□□□ -1.98
SCFD1-219ENST00000556413 K7EQD1 137 aa2.68□□□□□ -1.98
SCFD1-219ENST00000556413 SNAI1O95863 264 aaPredicted RBP2.68□□□□□ -1.98
SCFD1-219ENST00000556413 UQCRFS1P1P0C7P4 283 aa2.68□□□□□ -1.98
SCFD1-219ENST00000556413 EEF2P13639 858 aaKnown RBP2.68□□□□□ -1.98
SCFD1-219ENST00000556413 ALOX12P18054 663 aa2.68□□□□□ -1.98
SCFD1-219ENST00000556413 PTGER4P35408 488 aa2.68□□□□□ -1.98
SCFD1-219ENST00000556413 ACTN2P35609 894 aa2.68□□□□□ -1.98
SCFD1-219ENST00000556413 STAT2P52630 851 aa2.68□□□□□ -1.98
SCFD1-219ENST00000556413 CCNA1P78396 465 aa2.68□□□□□ -1.98
SCFD1-219ENST00000556413 CNTN2Q02246 1040 aa2.68□□□□□ -1.98
SCFD1-219ENST00000556413 EIF4EBP2Q13542 120 aaPredicted RBP2.68□□□□□ -1.98
SCFD1-219ENST00000556413 CUL4AQ13619 759 aa2.68□□□□□ -1.98
SCFD1-219ENST00000556413 RFTN1Q14699 578 aaPredicted RBP2.68□□□□□ -1.98
SCFD1-219ENST00000556413 ALDH1L2Q3SY69 923 aa2.68□□□□□ -1.98
SCFD1-219ENST00000556413 RILPL1Q5EBL4 403 aa2.68□□□□□ -1.98
SCFD1-219ENST00000556413 CCDC158Q5M9N0 1113 aa2.68□□□□□ -1.98
SCFD1-219ENST00000556413 GARNL3Q5VVW2 1013 aa2.68□□□□□ -1.98
SCFD1-219ENST00000556413 SNRNP48Q6IEG0 339 aaKnown RBP2.68□□□□□ -1.98
SCFD1-219ENST00000556413 C11orf63Q6NUN7 778 aa2.68□□□□□ -1.98
SCFD1-219ENST00000556413 CXCL17Q6UXB2 119 aa2.68□□□□□ -1.98
SCFD1-219ENST00000556413 TMEM173Q86WV6 379 aaPredicted RBP2.68□□□□□ -1.98
SCFD1-219ENST00000556413 OR4N5Q8IXE1 308 aa2.68□□□□□ -1.98
SCFD1-219ENST00000556413 C12orf42Q96LP6 360 aa2.68□□□□□ -1.98
SCFD1-219ENST00000556413 TRPV6Q9H1D0 765 aa2.68□□□□□ -1.98
SCFD1-219ENST00000556413 GOLPH3LQ9H4A5 285 aa2.68□□□□□ -1.98
SCFD1-219ENST00000556413 PSD3Q9NYI0 1048 aa2.68□□□□□ -1.98
SCFD1-219ENST00000556413 CRNNQ9UBG3 495 aaPredicted RBP2.68□□□□□ -1.98
SCFD1-219ENST00000556413 LNPEPQ9UIQ6 1025 aa2.68□□□□□ -1.98
SCFD1-219ENST00000556413 TMED3Q9Y3Q3 217 aa2.68□□□□□ -1.98
SCFD1-219ENST00000556413 R4GN57 208 aa2.68□□□□□ -1.98
SCFD1-219ENST00000556413 FRMPD3Q5JV73 1810 aa2.68□□□□□ -1.98
SCFD1-219ENST00000556413 CHD7Q9P2D1 2997 aa2.67□□□□□ -1.98
SCFD1-219ENST00000556413 SRRM4A7MD48 611 aaKnown RBP2.67□□□□□ -1.98
SCFD1-219ENST00000556413 CTAGE5O15320 804 aa2.67□□□□□ -1.98
SCFD1-219ENST00000556413 AHCYL1O43865 530 aa2.67□□□□□ -1.98
SCFD1-219ENST00000556413 NMT2O60551 498 aa2.67□□□□□ -1.98
SCFD1-219ENST00000556413 KRT33AO76009 404 aa2.67□□□□□ -1.98
SCFD1-219ENST00000556413 NXPH4O95158 308 aa2.67□□□□□ -1.98
SCFD1-219ENST00000556413 NDUFB10O96000 172 aa2.67□□□□□ -1.98
SCFD1-219ENST00000556413 ASGR1P07306 291 aa2.67□□□□□ -1.98
SCFD1-219ENST00000556413 CA3P07451 260 aa2.67□□□□□ -1.98
SCFD1-219ENST00000556413 GP1BBP13224 206 aa2.67□□□□□ -1.98
SCFD1-219ENST00000556413 EIF2DP41214 584 aaKnown RBP2.67□□□□□ -1.98
SCFD1-219ENST00000556413 OR3A2P47893 321 aa2.67□□□□□ -1.98
SCFD1-219ENST00000556413 ACLYP53396 1101 aa2.67□□□□□ -1.98
SCFD1-219ENST00000556413 NAP1L1P55209 391 aaKnown RBP2.67□□□□□ -1.98
SCFD1-219ENST00000556413 DHODHQ02127 395 aa2.67□□□□□ -1.98
SCFD1-219ENST00000556413 GABPAQ06546 454 aa2.67□□□□□ -1.98
SCFD1-219ENST00000556413 KCTD2Q14681 263 aa2.67□□□□□ -1.98
SCFD1-219ENST00000556413 PTPN14Q15678 1187 aa2.67□□□□□ -1.98
SCFD1-219ENST00000556413 RNLSQ5VYX0 342 aa2.67□□□□□ -1.98
SCFD1-219ENST00000556413 TATDN1Q6P1N9 297 aa2.67□□□□□ -1.98
SCFD1-219ENST00000556413 REG3GQ6UW15 175 aa2.67□□□□□ -1.98
SCFD1-219ENST00000556413 C3P1Q6ZMU1 363 aa2.67□□□□□ -1.98
SCFD1-219ENST00000556413 ARMCX2Q7L311 632 aa2.67□□□□□ -1.98
SCFD1-219ENST00000556413 MMD2Q8IY49 270 aa2.67□□□□□ -1.98
SCFD1-219ENST00000556413 TAGAPQ8N103 731 aa2.67□□□□□ -1.98
SCFD1-219ENST00000556413 MINDY1Q8N5J2 469 aa2.67□□□□□ -1.98
SCFD1-219ENST00000556413 CD177Q8N6Q3 437 aa2.67□□□□□ -1.98
SCFD1-219ENST00000556413 RTL3Q8N8U3 475 aaKnown RBP2.67□□□□□ -1.98
SCFD1-219ENST00000556413 THAP8Q8NA92 274 aa2.67□□□□□ -1.98
SCFD1-219ENST00000556413 OR7A2PQ8NGA2 310 aa2.67□□□□□ -1.98
SCFD1-219ENST00000556413 EXD1Q8NHP7 514 aa2.67□□□□□ -1.98
SCFD1-219ENST00000556413 ARNTL2Q8WYA1 636 aa2.67□□□□□ -1.98
SCFD1-219ENST00000556413 TMCO6Q96DC7 493 aa2.67□□□□□ -1.98
SCFD1-219ENST00000556413 FAM122AQ96E09 287 aa2.67□□□□□ -1.98
SCFD1-219ENST00000556413 MS4A10Q96PG2 267 aa2.67□□□□□ -1.98
SCFD1-219ENST00000556413 ABHD1Q96SE0 405 aa2.67□□□□□ -1.98
SCFD1-219ENST00000556413 CCDC3Q9BQI4 270 aa2.67□□□□□ -1.98
SCFD1-219ENST00000556413 TEX12Q9BXU0 123 aa2.67□□□□□ -1.98
SCFD1-219ENST00000556413 CRNKL1Q9BZJ0 848 aaKnown RBP2.67□□□□□ -1.98
SCFD1-219ENST00000556413 MTMR12Q9C0I1 747 aa2.67□□□□□ -1.98
SCFD1-219ENST00000556413 TLE6Q9H808 572 aa2.67□□□□□ -1.98
SCFD1-219ENST00000556413 EQTNQ9NQ60 294 aa2.67□□□□□ -1.98
SCFD1-219ENST00000556413 TBX21Q9UL17 535 aa2.67□□□□□ -1.98
SCFD1-219ENST00000556413 NAV1Q8NEY1 1877 aa2.67□□□□□ -1.98
SCFD1-219ENST00000556413 GRIN2DO15399 1336 aa2.67□□□□□ -1.98
SCFD1-219ENST00000556413 A0A0G2JMZ2 1700 aa2.66□□□□□ -1.98
SCFD1-219ENST00000556413 CHD9Q3L8U1 2897 aa2.66□□□□□ -1.98
SCFD1-219ENST00000556413 A0A0U1RQG5 324 aaPredicted RBP2.66□□□□□ -1.98
SCFD1-219ENST00000556413 HSFX4A0A1B0GTS1 333 aaPredicted RBP2.66□□□□□ -1.98
SCFD1-219ENST00000556413 HSFX3A0A1B0GWH4 333 aaPredicted RBP2.66□□□□□ -1.98
SCFD1-219ENST00000556413 A0A1W2PPM1 405 aa2.66□□□□□ -1.98
SCFD1-219ENST00000556413 ARPC2O15144 300 aa2.66□□□□□ -1.98
SCFD1-219ENST00000556413 WDR46O15213 610 aaKnown RBP2.66□□□□□ -1.98
SCFD1-219ENST00000556413 TSPAN9O75954 239 aa2.66□□□□□ -1.98
SCFD1-219ENST00000556413 BEST1O76090 585 aa2.66□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms