RNA–Protein interactions for RNA: ENST00000543627.1

DDB1-222, Transcript of damage specific DNA binding protein 1, human

TSL 5

Gene DDB1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-222	ENST00000543627	ZNF793	Q6ZN11	406 aa		10.38	□□□□□ -0.75
DDB1-222	ENST00000543627	SLC22A9	Q8IVM8	553 aa		10.38	□□□□□ -0.75
DDB1-222	ENST00000543627	OR4N5	Q8IXE1	308 aa		10.38	□□□□□ -0.75
DDB1-222	ENST00000543627	SRRM1	Q8IYB3	904 aa	Known RBP	10.38	□□□□□ -0.75
DDB1-222	ENST00000543627	TMEM151A	Q8N4L1	468 aa		10.38	□□□□□ -0.75
DDB1-222	ENST00000543627	CDYL2	Q8N8U2	506 aa		10.38	□□□□□ -0.75
DDB1-222	ENST00000543627	TMEM52	Q8NDY8	209 aa		10.38	□□□□□ -0.75
DDB1-222	ENST00000543627	CATSPER1	Q8NEC5	780 aa		10.38	□□□□□ -0.75
DDB1-222	ENST00000543627	AEN	Q8WTP8	325 aa	Known RBP	10.38	□□□□□ -0.75
DDB1-222	ENST00000543627	SELENOM	Q8WWX9	145 aa		10.38	□□□□□ -0.75
DDB1-222	ENST00000543627	QRFPR	Q96P65	431 aa		10.38	□□□□□ -0.75
DDB1-222	ENST00000543627	TMEM237	Q96Q45	408 aa		10.38	□□□□□ -0.75
DDB1-222	ENST00000543627	HBEGF	Q99075	208 aa		10.38	□□□□□ -0.75
DDB1-222	ENST00000543627	NPL	Q9BXD5	320 aa	Predicted RBP	10.38	□□□□□ -0.75
DDB1-222	ENST00000543627	SHCBP1L	Q9BZQ2	653 aa		10.38	□□□□□ -0.75
DDB1-222	ENST00000543627	CSTF2T	Q9H0L4	616 aa	Known RBP eCLIP	10.38	□□□□□ -0.75	1e-6	■□□□□ 8.7
DDB1-222	ENST00000543627	PPCS	Q9HAB8	311 aa		10.38	□□□□□ -0.75
DDB1-222	ENST00000543627	FARSB	Q9NSD9	589 aa	Known RBP	10.38	□□□□□ -0.75
DDB1-222	ENST00000543627	STMN3	Q9NZ72	180 aa		10.38	□□□□□ -0.75
DDB1-222	ENST00000543627	C5AR2	Q9P296	337 aa		10.38	□□□□□ -0.75
DDB1-222	ENST00000543627	DAPP1	Q9UN19	280 aa		10.38	□□□□□ -0.75
DDB1-222	ENST00000543627	SLC12A4	Q9UP95	1085 aa		10.38	□□□□□ -0.75
DDB1-222	ENST00000543627	PCDHGB7	Q9Y5F8	929 aa		10.38	□□□□□ -0.75
DDB1-222	ENST00000543627	CSAG2	Q9Y5P2	127 aa		10.38	□□□□□ -0.75
DDB1-222	ENST00000543627		A0A1B0GTL3	188 aa		10.37	□□□□□ -0.75
DDB1-222	ENST00000543627	DYTN	A2CJ06	578 aa		10.37	□□□□□ -0.75
DDB1-222	ENST00000543627	PCDH17	O14917	1159 aa		10.37	□□□□□ -0.75
DDB1-222	ENST00000543627	LDB3	O75112	727 aa		10.37	□□□□□ -0.75
DDB1-222	ENST00000543627	CRCP	O75575	148 aa		10.37	□□□□□ -0.75
DDB1-222	ENST00000543627	MYO1D	O94832	1006 aa		10.37	□□□□□ -0.75
DDB1-222	ENST00000543627	ZIC2	O95409	532 aa	Predicted RBP	10.37	□□□□□ -0.75
DDB1-222	ENST00000543627	ETHE1	O95571	254 aa		10.37	□□□□□ -0.75
DDB1-222	ENST00000543627	PDYN	P01213	254 aa		10.37	□□□□□ -0.75
DDB1-222	ENST00000543627	RPS17	P08708	135 aa	Known RBP	10.37	□□□□□ -0.75
DDB1-222	ENST00000543627	IMPDH1	P20839	514 aa		10.37	□□□□□ -0.75
DDB1-222	ENST00000543627	HIST1H1T	P22492	207 aa	Predicted RBP	10.37	□□□□□ -0.75
DDB1-222	ENST00000543627	PPP2R1B	P30154	601 aa		10.37	□□□□□ -0.75
DDB1-222	ENST00000543627	PIK3CB	P42338	1070 aa		10.37	□□□□□ -0.75
DDB1-222	ENST00000543627	SOX8	P57073	446 aa		10.37	□□□□□ -0.75
DDB1-222	ENST00000543627	HERVK_113	P63132	956 aa		10.37	□□□□□ -0.75
DDB1-222	ENST00000543627	BTK	Q06187	659 aa		10.37	□□□□□ -0.75
DDB1-222	ENST00000543627	ADPRM	Q3LIE5	342 aa		10.37	□□□□□ -0.75
DDB1-222	ENST00000543627	ABHD17B	Q5VST6	288 aa		10.37	□□□□□ -0.75
DDB1-222	ENST00000543627	FRG2	Q64ET8	278 aa		10.37	□□□□□ -0.75
DDB1-222	ENST00000543627	SLC6A19	Q695T7	634 aa		10.37	□□□□□ -0.75
DDB1-222	ENST00000543627	LETMD1	Q6P1Q0	360 aa		10.37	□□□□□ -0.75
DDB1-222	ENST00000543627	METTL2B	Q6P1Q9	378 aa	Known RBP	10.37	□□□□□ -0.75
DDB1-222	ENST00000543627	SCIMP	Q6UWF3	145 aa		10.37	□□□□□ -0.75
DDB1-222	ENST00000543627	QSOX2	Q6ZRP7	698 aa		10.37	□□□□□ -0.75
DDB1-222	ENST00000543627	LCA5	Q86VQ0	697 aa		10.37	□□□□□ -0.75
DDB1-222	ENST00000543627	TDRP	Q86YL5	185 aa		10.37	□□□□□ -0.75
DDB1-222	ENST00000543627	CISD2	Q8N5K1	135 aa	Known RBP	10.37	□□□□□ -0.75
DDB1-222	ENST00000543627	L3MBTL4	Q8NA19	623 aa		10.37	□□□□□ -0.75
DDB1-222	ENST00000543627	METTL6	Q8TCB7	284 aa		10.37	□□□□□ -0.75
DDB1-222	ENST00000543627	DOK4	Q8TEW6	326 aa		10.37	□□□□□ -0.75
DDB1-222	ENST00000543627	ZNF483	Q8TF39	744 aa	Predicted RBP	10.37	□□□□□ -0.75
DDB1-222	ENST00000543627	THAP3	Q8WTV1	239 aa	Predicted RBP	10.37	□□□□□ -0.75
DDB1-222	ENST00000543627	CAVIN3	Q969G5	261 aa		10.37	□□□□□ -0.75
DDB1-222	ENST00000543627	IMMP1L	Q96LU5	166 aa		10.37	□□□□□ -0.75
DDB1-222	ENST00000543627	FRG2B	Q96QU4	278 aa		10.37	□□□□□ -0.75
DDB1-222	ENST00000543627	NTMT1	Q9BV86	223 aa		10.37	□□□□□ -0.75
DDB1-222	ENST00000543627	ERVK-6	Q9BXR3	956 aa		10.37	□□□□□ -0.75
DDB1-222	ENST00000543627	CLK4	Q9HAZ1	481 aa	Known RBP	10.37	□□□□□ -0.75
DDB1-222	ENST00000543627	ANKRD10	Q9NXR5	420 aa		10.37	□□□□□ -0.75
DDB1-222	ENST00000543627	SNX6	Q9UNH7	406 aa		10.37	□□□□□ -0.75
DDB1-222	ENST00000543627	COL6A6	A6NMZ7	2263 aa		10.37	□□□□□ -0.75
DDB1-222	ENST00000543627	SETX	Q7Z333	2677 aa	Known RBP	10.36	□□□□□ -0.75
DDB1-222	ENST00000543627	GLOD5	A6NK44	160 aa		10.36	□□□□□ -0.75
DDB1-222	ENST00000543627	PLPP1	O14494	284 aa		10.36	□□□□□ -0.75
DDB1-222	ENST00000543627	EED	O75530	441 aa	Known RBP	10.36	□□□□□ -0.75
DDB1-222	ENST00000543627	PRKRA	O75569	313 aa	Known RBP	10.36	□□□□□ -0.75
DDB1-222	ENST00000543627	PROC	P04070	461 aa		10.36	□□□□□ -0.75
DDB1-222	ENST00000543627	KLK1	P06870	262 aa		10.36	□□□□□ -0.75
DDB1-222	ENST00000543627	CPA3	P15088	417 aa		10.36	□□□□□ -0.75
DDB1-222	ENST00000543627	TLX1	P31314	330 aa	Predicted RBP	10.36	□□□□□ -0.75
DDB1-222	ENST00000543627	CRHR1	P34998	444 aa		10.36	□□□□□ -0.75
DDB1-222	ENST00000543627	PRKAA2	P54646	552 aa		10.36	□□□□□ -0.75
DDB1-222	ENST00000543627	NAGLU	P54802	743 aa		10.36	□□□□□ -0.75
DDB1-222	ENST00000543627	SLC26A5	P58743	744 aa		10.36	□□□□□ -0.75
DDB1-222	ENST00000543627	TAS2R50	P59544	299 aa		10.36	□□□□□ -0.75
DDB1-222	ENST00000543627	AP2B1	P63010	937 aa		10.36	□□□□□ -0.75
DDB1-222	ENST00000543627	TRAF3	Q13114	568 aa		10.36	□□□□□ -0.75
DDB1-222	ENST00000543627	MFAP5	Q13361	173 aa		10.36	□□□□□ -0.75
DDB1-222	ENST00000543627	EXT1	Q16394	746 aa		10.36	□□□□□ -0.75
DDB1-222	ENST00000543627	KRT71	Q3SY84	523 aa		10.36	□□□□□ -0.75
DDB1-222	ENST00000543627	CCDC153	Q494R4	210 aa		10.36	□□□□□ -0.75
DDB1-222	ENST00000543627	PRR30	Q53SZ7	412 aa	Predicted RBP	10.36	□□□□□ -0.75
DDB1-222	ENST00000543627	CRB2	Q5IJ48	1285 aa		10.36	□□□□□ -0.75
DDB1-222	ENST00000543627	TCHHL1	Q5QJ38	904 aa	Predicted RBP	10.36	□□□□□ -0.75
DDB1-222	ENST00000543627	C18orf63	Q68DL7	685 aa		10.36	□□□□□ -0.75
DDB1-222	ENST00000543627	RIPOR1	Q6ZS17	1223 aa		10.36	□□□□□ -0.75
DDB1-222	ENST00000543627	GPRIN3	Q6ZVF9	776 aa		10.36	□□□□□ -0.75
DDB1-222	ENST00000543627	GPR180	Q86V85	440 aa		10.36	□□□□□ -0.75
DDB1-222	ENST00000543627	ZNF595	Q8IYB9	648 aa		10.36	□□□□□ -0.75
DDB1-222	ENST00000543627	KIF2B	Q8N4N8	673 aa		10.36	□□□□□ -0.75
DDB1-222	ENST00000543627	OR1N1	Q8NGS0	311 aa		10.36	□□□□□ -0.75
DDB1-222	ENST00000543627	WDR20	Q8TBZ3	569 aa		10.36	□□□□□ -0.75
DDB1-222	ENST00000543627	CPT1C	Q8TCG5	803 aa		10.36	□□□□□ -0.75
DDB1-222	ENST00000543627	ADAMTS18	Q8TE60	1221 aa		10.36	□□□□□ -0.75
DDB1-222	ENST00000543627	SMC6	Q96SB8	1091 aa		10.36	□□□□□ -0.75

Retrieved 100 of 20,778 RNA–protein pairs in 105.2 ms