RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 C1QAP02745 245 aa17.88■□□□□ 0.45
CCDC28A-203ENST00000617445 CRABP2P29373 138 aa17.88■□□□□ 0.45
CCDC28A-203ENST00000617445 CD96P40200 585 aa17.88■□□□□ 0.45
CCDC28A-203ENST00000617445 BTG2P78543 158 aa17.88■□□□□ 0.45
CCDC28A-203ENST00000617445 RCN2Q14257 317 aa17.88■□□□□ 0.45
CCDC28A-203ENST00000617445 TERF2Q15554 542 aa17.88■□□□□ 0.45
CCDC28A-203ENST00000617445 OR1C1Q15619 314 aa17.88■□□□□ 0.45
CCDC28A-203ENST00000617445 C18orf21Q32NC0 220 aaPredicted RBP17.88■□□□□ 0.45
CCDC28A-203ENST00000617445 ADPRMQ3LIE5 342 aa17.88■□□□□ 0.45
CCDC28A-203ENST00000617445 KBTBD12Q3ZCT8 623 aa17.88■□□□□ 0.45
CCDC28A-203ENST00000617445 PAGE2BQ5JRK9 111 aa17.88■□□□□ 0.45
CCDC28A-203ENST00000617445 FCRLBQ6BAA4 426 aa17.88■□□□□ 0.45
CCDC28A-203ENST00000617445 GFRALQ6UXV0 394 aa17.88■□□□□ 0.45
CCDC28A-203ENST00000617445 SYT10Q6XYQ8 523 aa17.88■□□□□ 0.45
CCDC28A-203ENST00000617445 CTAGE6Q86UF2 777 aa17.88■□□□□ 0.45
CCDC28A-203ENST00000617445 CYP4X1Q8N118 509 aa17.88■□□□□ 0.45
CCDC28A-203ENST00000617445 CA13Q8N1Q1 262 aa17.88■□□□□ 0.45
CCDC28A-203ENST00000617445 SPATA6LQ8N4H0 392 aa17.88■□□□□ 0.45
CCDC28A-203ENST00000617445 TMEM178AQ8NBL3 297 aa17.88■□□□□ 0.45
CCDC28A-203ENST00000617445 MS4A6EQ96DS6 147 aa17.88■□□□□ 0.45
CCDC28A-203ENST00000617445 PTCD3Q96EY7 689 aaKnown RBP17.88■□□□□ 0.45
CCDC28A-203ENST00000617445 TMEM79Q9BSE2 394 aa17.88■□□□□ 0.45
CCDC28A-203ENST00000617445 RHBGQ9H310 441 aa17.88■□□□□ 0.45
CCDC28A-203ENST00000617445 NMRAL1Q9HBL8 299 aa17.88■□□□□ 0.45
CCDC28A-203ENST00000617445 RNF112Q9ULX5 631 aa17.88■□□□□ 0.45
CCDC28A-203ENST00000617445 MRPS33Q9Y291 106 aaKnown RBP17.88■□□□□ 0.45
CCDC28A-203ENST00000617445 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.88■□□□□ 0.45
CCDC28A-203ENST00000617445 NBPF19A0A087WUL8 3843 aa17.88■□□□□ 0.45
CCDC28A-203ENST00000617445 CCDC189A1A4V9 331 aa17.87■□□□□ 0.45
CCDC28A-203ENST00000617445 GABRR3A8MPY1 467 aa17.87■□□□□ 0.45
CCDC28A-203ENST00000617445 ERI3O43414 337 aaKnown RBP17.87■□□□□ 0.45
CCDC28A-203ENST00000617445 B3GALT2O43825 422 aa17.87■□□□□ 0.45
CCDC28A-203ENST00000617445 HSPA7P48741 367 aa17.87■□□□□ 0.45
CCDC28A-203ENST00000617445 HSD17B7P56937 341 aa17.87■□□□□ 0.45
CCDC28A-203ENST00000617445 RBPJQ06330 500 aa17.87■□□□□ 0.45
CCDC28A-203ENST00000617445 TGM3Q08188 693 aa17.87■□□□□ 0.45
CCDC28A-203ENST00000617445 OR4D1Q15615 310 aa17.87■□□□□ 0.45
CCDC28A-203ENST00000617445 TBCCQ15814 346 aa17.87■□□□□ 0.45
CCDC28A-203ENST00000617445 PDK4Q16654 411 aa17.87■□□□□ 0.45
CCDC28A-203ENST00000617445 HIST2H2ACQ16777 129 aaPredicted RBP17.87■□□□□ 0.45
CCDC28A-203ENST00000617445 HIST2H2AA3Q6FI13 130 aa17.87■□□□□ 0.45
CCDC28A-203ENST00000617445 TRIM40Q6P9F5 258 aa17.87■□□□□ 0.45
CCDC28A-203ENST00000617445 CCDC25Q86WR0 208 aa17.87■□□□□ 0.45
CCDC28A-203ENST00000617445 AMER2Q8N7J2 671 aa17.87■□□□□ 0.45
CCDC28A-203ENST00000617445 PPM1NQ8N819 430 aa17.87■□□□□ 0.45
CCDC28A-203ENST00000617445 SRFBP1Q8NEF9 429 aaKnown RBP17.87■□□□□ 0.45
CCDC28A-203ENST00000617445 OR2L5Q8NG80 312 aa17.87■□□□□ 0.45
CCDC28A-203ENST00000617445 CCT6BQ92526 530 aa17.87■□□□□ 0.45
CCDC28A-203ENST00000617445 SCMH1Q96GD3 660 aa17.87■□□□□ 0.45
CCDC28A-203ENST00000617445 NPAS2Q99743 824 aa17.87■□□□□ 0.45
CCDC28A-203ENST00000617445 UNKQ9C0B0 810 aaKnown RBP17.87■□□□□ 0.45
CCDC28A-203ENST00000617445 REXO4Q9GZR2 422 aaKnown RBP17.87■□□□□ 0.45
CCDC28A-203ENST00000617445 AICDAQ9GZX7 198 aa17.87■□□□□ 0.45
CCDC28A-203ENST00000617445 CDCP1Q9H5V8 836 aa17.87■□□□□ 0.45
CCDC28A-203ENST00000617445 SEC14L3Q9UDX4 400 aa17.87■□□□□ 0.45
CCDC28A-203ENST00000617445 ITPR2Q14571 2701 aa17.86■□□□□ 0.45
CCDC28A-203ENST00000617445 MAOAP21397 527 aa17.86■□□□□ 0.45
CCDC28A-203ENST00000617445 EEF1DP29692 281 aaKnown RBP17.86■□□□□ 0.45
CCDC28A-203ENST00000617445 HNRNPH1P31943 449 aaKnown RBP17.86■□□□□ 0.45
CCDC28A-203ENST00000617445 CASP2P42575 452 aa17.86■□□□□ 0.45
CCDC28A-203ENST00000617445 OC90Q02509 493 aaPredicted RBP17.86■□□□□ 0.45
CCDC28A-203ENST00000617445 CKAP4Q07065 602 aaKnown RBP17.86■□□□□ 0.45
CCDC28A-203ENST00000617445 KRTCAP3Q53RY4 240 aa17.86■□□□□ 0.45
CCDC28A-203ENST00000617445 XKR6Q5GH73 641 aa17.86■□□□□ 0.45
CCDC28A-203ENST00000617445 RAPH1Q70E73 1250 aa17.86■□□□□ 0.45
CCDC28A-203ENST00000617445 LRRC70Q7Z2Q7 622 aa17.86■□□□□ 0.45
CCDC28A-203ENST00000617445 TBC1D1Q86TI0 1168 aaPredicted RBP17.86■□□□□ 0.45
CCDC28A-203ENST00000617445 ZNF595Q8IYB9 648 aa17.86■□□□□ 0.45
CCDC28A-203ENST00000617445 SLC34A3Q8N130 599 aa17.86■□□□□ 0.45
CCDC28A-203ENST00000617445 ARMC10Q8N2F6 343 aa17.86■□□□□ 0.45
CCDC28A-203ENST00000617445 SNX31Q8N9S9 440 aa17.86■□□□□ 0.45
CCDC28A-203ENST00000617445 FAM98AQ8NCA5 519 aaKnown RBP17.86■□□□□ 0.45
CCDC28A-203ENST00000617445 UBE2E3Q969T4 207 aa17.86■□□□□ 0.45
CCDC28A-203ENST00000617445 SIGLEC12Q96PQ1 595 aa17.86■□□□□ 0.45
CCDC28A-203ENST00000617445 SERINC2Q96SA4 455 aa17.86■□□□□ 0.45
CCDC28A-203ENST00000617445 CD244Q9BZW8 370 aa17.86■□□□□ 0.45
CCDC28A-203ENST00000617445 ROGDIQ9GZN7 287 aa17.86■□□□□ 0.45
CCDC28A-203ENST00000617445 TRIM45Q9H8W5 580 aaPredicted RBP17.86■□□□□ 0.45
CCDC28A-203ENST00000617445 NECTIN3Q9NQS3 549 aa17.86■□□□□ 0.45
CCDC28A-203ENST00000617445 ASPDHA6ND91 283 aa17.85■□□□□ 0.45
CCDC28A-203ENST00000617445 C4orf51C9J302 202 aa17.85■□□□□ 0.45
CCDC28A-203ENST00000617445 FAM227AF5H4B4 570 aa17.85■□□□□ 0.45
CCDC28A-203ENST00000617445 FCHO1O14526 889 aa17.85■□□□□ 0.45
CCDC28A-203ENST00000617445 UNC5CO95185 931 aa17.85■□□□□ 0.45
CCDC28A-203ENST00000617445 MST1P26927 711 aa17.85■□□□□ 0.45
CCDC28A-203ENST00000617445 RAB38P57729 211 aa17.85■□□□□ 0.45
CCDC28A-203ENST00000617445 KCNK10P57789 538 aa17.85■□□□□ 0.45
CCDC28A-203ENST00000617445 IRF8Q02556 426 aa17.85■□□□□ 0.45
CCDC28A-203ENST00000617445 GUCY2DQ02846 1103 aa17.85■□□□□ 0.45
CCDC28A-203ENST00000617445 PCDH1Q08174 1060 aa17.85■□□□□ 0.45
CCDC28A-203ENST00000617445 RUNX2Q13950 521 aa17.85■□□□□ 0.45
CCDC28A-203ENST00000617445 DOC2AQ14183 400 aa17.85■□□□□ 0.45
CCDC28A-203ENST00000617445 ZRSR2Q15696 482 aaKnown RBP17.85■□□□□ 0.45
CCDC28A-203ENST00000617445 HIST2H2BCQ6DN03 193 aa17.85■□□□□ 0.45
CCDC28A-203ENST00000617445 MTFR2Q6P444 385 aa17.85■□□□□ 0.45
CCDC28A-203ENST00000617445 ZDHHC24Q6UX98 284 aa17.85■□□□□ 0.45
CCDC28A-203ENST00000617445 ISCA2Q86U28 154 aa17.85■□□□□ 0.45
CCDC28A-203ENST00000617445 SCUBE1Q8IWY4 988 aa17.85■□□□□ 0.45
CCDC28A-203ENST00000617445 C7orf57Q8NEG2 295 aa17.85■□□□□ 0.45
CCDC28A-203ENST00000617445 NFAM1Q8NET5 270 aaPredicted RBP17.85■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms