RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 MEP1AQ16819 746 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 RNF175Q8N4F7 328 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 TCEANCQ8N8B7 351 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 OR52E4Q8NGH9 312 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 GIPC3Q8TF64 312 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 COMMD4Q9H0A8 199 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 CDCP1Q9H5V8 836 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 ZNF395Q9H8N7 513 aaPredicted RBP8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 SESN1Q9Y6P5 492 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 PAPSS2O95340 614 aaPredicted RBP8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 FTH1P19P0C7X4 201 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 RPS14P62263 151 aaKnown RBP8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 DNASE1L3Q13609 305 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 ADIPOR2Q86V24 386 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 BCORP1Q8N888 145 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 EEF1AKMT1Q8WVE0 214 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 TCEAL3Q969E4 200 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 LOXL4Q96JB6 756 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 KLF16Q9BXK1 252 aaPredicted RBP8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 XPR1Q9UBH6 696 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 PAPPA2Q9BXP8 1791 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 TRAV17A0A0B4J275 112 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 ANKRD61A6NGH8 418 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 C2CD4BA6NLJ0 364 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 BLOC1S5-TXNDC5H3BN57 136 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 MMP8P22894 467 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 EMP3P54852 163 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 SP140Q13342 867 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 PLEKHS1Q5SXH7 462 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 SMARCD3Q6STE5 483 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 PARS2Q7L3T8 475 aaKnown RBP8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 GALNTL5Q7Z4T8 443 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 OR56A1Q8NGH5 318 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 OR6K6Q8NGW6 343 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 IL17FQ96PD4 163 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 SLC24A2Q9UI40 661 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 A0A0J9YYE9 177 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 A0A1W2PPH5 198 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 G3V3Y1 287 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 K7EPI3 171 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 NIPSNAP2O75323 286 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 CHRNA4P43681 627 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 PPIAP62937 165 aaKnown RBP8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 FOXK2Q01167 660 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 CAMK2DQ13557 499 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 TICAM1Q8IUC6 712 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 DCBLD1Q8N8Z6 715 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 GPBAR1Q8TDU6 330 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 ACTR6Q9GZN1 396 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 EGLN1Q9GZT9 426 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 ZNF160Q9HCG1 818 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 C14orf105Q9NVL8 296 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 SLC7A11Q9UPY5 501 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 PCDHGB7Q9Y5F8 929 aa8.85□□□□□ -0.99
LIMCH1-202ENST00000381753 FAM92AA1XBS5 289 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 C11orf98E9PRG8 122 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 SGK494L7N484 410 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 GABRDO14764 452 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 MTRF1O75570 445 aaKnown RBP8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 GATBO75879 557 aaKnown RBP8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 ADH7P40394 386 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 CCR5P51681 352 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 ACTG1P63261 375 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 NKAPLQ5M9Q1 402 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 DDI2Q5TDH0 399 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 ZNF765Q7L2R6 523 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 NATD1Q8N6N6 113 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 BMFQ96LC9 184 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 MAGEB18Q96M61 343 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 RNF145Q96MT1 663 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 ALOXE3Q9BYJ1 711 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 AMBRA1Q9C0C7 1298 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 C1orf21Q9H246 121 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 IL25Q9H293 177 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 RPF2Q9H7B2 306 aaKnown RBP8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 APOBEC3GQ9HC16 384 aaKnown RBP8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 PCDHB16Q9NRJ7 776 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 LEF1Q9UJU2 399 aaPredicted RBP8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 CPSF4LA6NMK7 179 aaKnown RBP8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 MRPL33O75394 65 aaKnown RBP8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 CSTAP01040 98 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 HNRNPCP07910 306 aaKnown RBP eCLIP8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 BGNP21810 368 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 DNASE1P24855 282 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 ACVR2AP27037 513 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 AQP5P55064 265 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 RAB25P57735 213 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 DPYSQ14117 519 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 LRRC70Q7Z2Q7 622 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 LGI4Q8N135 537 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 CLDN19Q8N6F1 224 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 OR2I1PQ8NGU4 316 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 ATP6V1G3Q96LB4 118 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 CAMK1GQ96NX5 476 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 STRA6Q9BX79 667 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 KLHL31Q9H511 634 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 EHD3Q9NZN3 535 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 GRHPRQ9UBQ7 328 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 NOCTQ9UK39 431 aaKnown RBP8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 BTBD3Q9Y2F9 522 aa8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms