RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 HPCAL1P37235 193 aa17.69■□□□□ 0.42
CLN3-206ENST00000360019 KIR3DL1P43629 444 aa17.69■□□□□ 0.42
CLN3-206ENST00000360019 WNT3P56703 355 aa17.69■□□□□ 0.42
CLN3-206ENST00000360019 VSX2P58304 361 aaPredicted RBP17.69■□□□□ 0.42
CLN3-206ENST00000360019 PLIN5Q00G26 463 aa17.69■□□□□ 0.42
CLN3-206ENST00000360019 SRSF11Q05519 484 aaKnown RBP17.69■□□□□ 0.42
CLN3-206ENST00000360019 C2orf80Q0P641 193 aa17.69■□□□□ 0.42
CLN3-206ENST00000360019 PDE7AQ13946 482 aa17.69■□□□□ 0.42
CLN3-206ENST00000360019 MAPKAPK3Q16644 382 aa17.69■□□□□ 0.42
CLN3-206ENST00000360019 DPY19L1Q2PZI1 675 aa17.69■□□□□ 0.42
CLN3-206ENST00000360019 PGM2L1Q6PCE3 622 aa17.69■□□□□ 0.42
CLN3-206ENST00000360019 DLEU7Q6UYE1 221 aa17.69■□□□□ 0.42
CLN3-206ENST00000360019 IKBIPQ70UQ0 350 aa17.69■□□□□ 0.42
CLN3-206ENST00000360019 CAMKMTQ7Z624 323 aa17.69■□□□□ 0.42
CLN3-206ENST00000360019 GPR180Q86V85 440 aa17.69■□□□□ 0.42
CLN3-206ENST00000360019 PLXDC1Q8IUK5 500 aa17.69■□□□□ 0.42
CLN3-206ENST00000360019 MMP21Q8N119 569 aa17.69■□□□□ 0.42
CLN3-206ENST00000360019 ACOT4Q8N9L9 421 aa17.69■□□□□ 0.42
CLN3-206ENST00000360019 SRFBP1Q8NEF9 429 aaKnown RBP17.69■□□□□ 0.42
CLN3-206ENST00000360019 OR8J2Q8NGG1 315 aa17.69■□□□□ 0.42
CLN3-206ENST00000360019 STARD8Q92502 1023 aa17.69■□□□□ 0.42
CLN3-206ENST00000360019 SMIM10Q96HG1 83 aa17.69■□□□□ 0.42
CLN3-206ENST00000360019 CDRT15Q96T59 188 aa17.69■□□□□ 0.42
CLN3-206ENST00000360019 TBCDQ9BTW9 1192 aa17.69■□□□□ 0.42
CLN3-206ENST00000360019 COL25A1Q9BXS0 654 aaPredicted RBP17.69■□□□□ 0.42
CLN3-206ENST00000360019 REEP4Q9H6H4 257 aa17.69■□□□□ 0.42
CLN3-206ENST00000360019 SERHLQ9NQF3 203 aa17.69■□□□□ 0.42
CLN3-206ENST00000360019 ATP6V1HQ9UI12 483 aa17.69■□□□□ 0.42
CLN3-206ENST00000360019 SORBS2O94875 1100 aaKnown RBP17.68■□□□□ 0.42
CLN3-206ENST00000360019 TSFMP43897 325 aaKnown RBP17.68■□□□□ 0.42
CLN3-206ENST00000360019 GABRA4P48169 554 aa17.68■□□□□ 0.42
CLN3-206ENST00000360019 PROX2Q3B8N5 592 aa17.68■□□□□ 0.42
CLN3-206ENST00000360019 ZNF385BQ569K4 471 aa17.68■□□□□ 0.42
CLN3-206ENST00000360019 LAIR1Q6GTX8 287 aa17.68■□□□□ 0.42
CLN3-206ENST00000360019 BNC2Q6ZN30 1099 aaPredicted RBP17.68■□□□□ 0.42
CLN3-206ENST00000360019 SCUBE1Q8IWY4 988 aa17.68■□□□□ 0.42
CLN3-206ENST00000360019 ARHGAP24Q8N264 748 aa17.68■□□□□ 0.42
CLN3-206ENST00000360019 ZCCHC7Q8N3Z6 543 aaKnown RBP17.68■□□□□ 0.42
CLN3-206ENST00000360019 CSNK1A1LQ8N752 337 aa17.68■□□□□ 0.42
CLN3-206ENST00000360019 FAM13CQ8NE31 585 aa17.68■□□□□ 0.42
CLN3-206ENST00000360019 ZCCHC10Q8TBK6 192 aa17.68■□□□□ 0.42
CLN3-206ENST00000360019 COQ8BQ96D53 544 aa17.68■□□□□ 0.42
CLN3-206ENST00000360019 NUDT22Q9BRQ3 303 aa17.68■□□□□ 0.42
CLN3-206ENST00000360019 ZMYND15Q9H091 742 aa17.68■□□□□ 0.42
CLN3-206ENST00000360019 GID8Q9NWU2 228 aa17.68■□□□□ 0.42
CLN3-206ENST00000360019 TEX10Q9NXF1 929 aaPredicted RBP17.68■□□□□ 0.42
CLN3-206ENST00000360019 SLC7A8Q9UHI5 535 aa17.68■□□□□ 0.42
CLN3-206ENST00000360019 PACSIN3Q9UKS6 424 aa17.68■□□□□ 0.42
CLN3-206ENST00000360019 PRPF19Q9UMS4 504 aaKnown RBP17.68■□□□□ 0.42
CLN3-206ENST00000360019 MAPRE3Q9UPY8 281 aa17.68■□□□□ 0.42
CLN3-206ENST00000360019 MRPS2Q9Y399 296 aaKnown RBP17.68■□□□□ 0.42
CLN3-206ENST00000360019 NEUROG3Q9Y4Z2 214 aa17.68■□□□□ 0.42
CLN3-206ENST00000360019 H0YHG0 523 aa17.68■□□□□ 0.42
CLN3-206ENST00000360019 SCN2BO60939 215 aa17.68■□□□□ 0.42
CLN3-206ENST00000360019 RASSF9O75901 435 aa17.68■□□□□ 0.42
CLN3-206ENST00000360019 PDE5AO76074 875 aa17.68■□□□□ 0.42
CLN3-206ENST00000360019 SCELO95171 688 aa17.68■□□□□ 0.42
CLN3-206ENST00000360019 CERS1P27544 350 aa17.68■□□□□ 0.42
CLN3-206ENST00000360019 ATXN3P54252 364 aaPredicted RBP17.68■□□□□ 0.42
CLN3-206ENST00000360019 KLC1Q07866 573 aa17.68■□□□□ 0.42
CLN3-206ENST00000360019 COL9A2Q14055 689 aaPredicted RBP17.68■□□□□ 0.42
CLN3-206ENST00000360019 ZC3H12BQ5HYM0 836 aaKnown RBP17.68■□□□□ 0.42
CLN3-206ENST00000360019 MRM1Q6IN84 353 aaKnown RBP17.68■□□□□ 0.42
CLN3-206ENST00000360019 TMEM214Q6NUQ4 689 aaKnown RBP17.68■□□□□ 0.42
CLN3-206ENST00000360019 DHDDSQ86SQ9 333 aa17.68■□□□□ 0.42
CLN3-206ENST00000360019 ANKRD46Q86W74 232 aa17.68■□□□□ 0.42
CLN3-206ENST00000360019 MCATQ8IVS2 390 aaKnown RBP17.68■□□□□ 0.42
CLN3-206ENST00000360019 CCDC3Q9BQI4 270 aa17.68■□□□□ 0.42
CLN3-206ENST00000360019 CHRNA10Q9GZZ6 450 aa17.68■□□□□ 0.42
CLN3-206ENST00000360019 SPAG4Q9NPE6 437 aa17.68■□□□□ 0.42
CLN3-206ENST00000360019 STARD5Q9NSY2 213 aa17.68■□□□□ 0.42
CLN3-206ENST00000360019 A8MUI8 341 aa17.67■□□□□ 0.42
CLN3-206ENST00000360019 ZSCAN9O15535 394 aaPredicted RBP17.67■□□□□ 0.42
CLN3-206ENST00000360019 MLLT3P42568 568 aaPredicted RBP17.67■□□□□ 0.42
CLN3-206ENST00000360019 MTTPP55157 894 aa17.67■□□□□ 0.42
CLN3-206ENST00000360019 BTN3A2P78410 334 aa17.67■□□□□ 0.42
CLN3-206ENST00000360019 TGM3Q08188 693 aa17.67■□□□□ 0.42
CLN3-206ENST00000360019 PRSS53Q2L4Q9 553 aa17.67■□□□□ 0.42
CLN3-206ENST00000360019 CPTPQ5TA50 214 aa17.67■□□□□ 0.42
CLN3-206ENST00000360019 WDR74Q6RFH5 385 aaPredicted RBP17.67■□□□□ 0.42
CLN3-206ENST00000360019 MSANTD1Q6ZTZ1 278 aa17.67■□□□□ 0.42
CLN3-206ENST00000360019 TMPRSS9Q7Z410 1059 aa17.67■□□□□ 0.42
CLN3-206ENST00000360019 KIAA2013Q8IYS2 634 aa17.67■□□□□ 0.42
CLN3-206ENST00000360019 HOPXQ9BPY8 73 aaPredicted RBP17.67■□□□□ 0.42
CLN3-206ENST00000360019 DUSP26Q9BV47 211 aa17.67■□□□□ 0.42
CLN3-206ENST00000360019 TRIM8Q9BZR9 551 aa17.67■□□□□ 0.42
CLN3-206ENST00000360019 SOHLH2Q9NX45 425 aa17.67■□□□□ 0.42
CLN3-206ENST00000360019 SH3BP4Q9P0V3 963 aa17.67■□□□□ 0.42
CLN3-206ENST00000360019 WBP11Q9Y2W2 641 aaKnown RBP17.67■□□□□ 0.42
CLN3-206ENST00000360019 CROCCQ5TZA2 2017 aa17.67■□□□□ 0.42
CLN3-206ENST00000360019 A0A1W2PQM1 296 aa17.66■□□□□ 0.42
CLN3-206ENST00000360019 URADA6NGE7 173 aa17.66■□□□□ 0.42
CLN3-206ENST00000360019 ZBTB11O95625 1053 aaPredicted RBP17.66■□□□□ 0.42
CLN3-206ENST00000360019 NPPAP01160 153 aa17.66■□□□□ 0.42
CLN3-206ENST00000360019 FAM58BPP0C7Q3 252 aa17.66■□□□□ 0.42
CLN3-206ENST00000360019 ZNF883P0CG24 379 aa17.66■□□□□ 0.42
CLN3-206ENST00000360019 CKMT1AP12532 417 aa17.66■□□□□ 0.42
CLN3-206ENST00000360019 DDCP20711 480 aa17.66■□□□□ 0.42
CLN3-206ENST00000360019 SLC6A2P23975 617 aa17.66■□□□□ 0.42
CLN3-206ENST00000360019 GSTM5P46439 218 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms