RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 CLGNO14967 610 aa16.63■□□□□ 0.25
HDDC3-201ENST00000330334 NCF1P14598 390 aaPredicted RBP16.63■□□□□ 0.25
HDDC3-201ENST00000330334 CD46P15529 392 aa16.63■□□□□ 0.25
HDDC3-201ENST00000330334 ZNF10P21506 573 aaPredicted RBP16.63■□□□□ 0.25
HDDC3-201ENST00000330334 STX2P32856 288 aa16.63■□□□□ 0.25
HDDC3-201ENST00000330334 CASP2P42575 452 aa16.63■□□□□ 0.25
HDDC3-201ENST00000330334 MAGEA4P43358 317 aa16.63■□□□□ 0.25
HDDC3-201ENST00000330334 BTN3A2P78410 334 aa16.63■□□□□ 0.25
HDDC3-201ENST00000330334 GUCY2DQ02846 1103 aa16.63■□□□□ 0.25
HDDC3-201ENST00000330334 E2F2Q14209 437 aa16.63■□□□□ 0.25
HDDC3-201ENST00000330334 TERF2Q15554 542 aa16.63■□□□□ 0.25
HDDC3-201ENST00000330334 OR4D1Q15615 310 aa16.63■□□□□ 0.25
HDDC3-201ENST00000330334 OR1C1Q15619 314 aa16.63■□□□□ 0.25
HDDC3-201ENST00000330334 TBCCQ15814 346 aa16.63■□□□□ 0.25
HDDC3-201ENST00000330334 KBTBD12Q3ZCT8 623 aa16.63■□□□□ 0.25
HDDC3-201ENST00000330334 HIST2H2BCQ6DN03 193 aa16.63■□□□□ 0.25
HDDC3-201ENST00000330334 GFRALQ6UXV0 394 aa16.63■□□□□ 0.25
HDDC3-201ENST00000330334 CCDC91Q7Z6B0 441 aa16.63■□□□□ 0.25
HDDC3-201ENST00000330334 RPS19BP1Q86WX3 136 aaKnown RBP16.63■□□□□ 0.25
HDDC3-201ENST00000330334 CTAGE3PQ8IX95 158 aa16.63■□□□□ 0.25
HDDC3-201ENST00000330334 NFAM1Q8NET5 270 aaPredicted RBP16.63■□□□□ 0.25
HDDC3-201ENST00000330334 OR2L5Q8NG80 312 aa16.63■□□□□ 0.25
HDDC3-201ENST00000330334 STAG3L4Q8TBR4 150 aa16.63■□□□□ 0.25
HDDC3-201ENST00000330334 ADAMTS18Q8TE60 1221 aa16.63■□□□□ 0.25
HDDC3-201ENST00000330334 PTCD3Q96EY7 689 aaKnown RBP16.63■□□□□ 0.25
HDDC3-201ENST00000330334 EFCAB11Q9BUY7 163 aa16.63■□□□□ 0.25
HDDC3-201ENST00000330334 RHBGQ9H310 441 aa16.63■□□□□ 0.25
HDDC3-201ENST00000330334 WWOXQ9NZC7 414 aa16.63■□□□□ 0.25
HDDC3-201ENST00000330334 ZNF490Q9ULM2 529 aaPredicted RBP16.63■□□□□ 0.25
HDDC3-201ENST00000330334 PPIEQ9UNP9 301 aaKnown RBP16.63■□□□□ 0.25
HDDC3-201ENST00000330334 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.63■□□□□ 0.25
HDDC3-201ENST00000330334 CCDC189A1A4V9 331 aa16.62■□□□□ 0.25
HDDC3-201ENST00000330334 C4orf51C9J302 202 aa16.62■□□□□ 0.25
HDDC3-201ENST00000330334 FAM227AF5H4B4 570 aa16.62■□□□□ 0.25
HDDC3-201ENST00000330334 PRAMEF4O60810 478 aa16.62■□□□□ 0.25
HDDC3-201ENST00000330334 TBX6O95947 436 aaPredicted RBP16.62■□□□□ 0.25
HDDC3-201ENST00000330334 MAOAP21397 527 aa16.62■□□□□ 0.25
HDDC3-201ENST00000330334 MST1P26927 711 aa16.62■□□□□ 0.25
HDDC3-201ENST00000330334 CRABP2P29373 138 aa16.62■□□□□ 0.25
HDDC3-201ENST00000330334 HNRNPH1P31943 449 aaKnown RBP16.62■□□□□ 0.25
HDDC3-201ENST00000330334 HSD17B7P56937 341 aa16.62■□□□□ 0.25
HDDC3-201ENST00000330334 PCDH1Q08174 1060 aa16.62■□□□□ 0.25
HDDC3-201ENST00000330334 LAPTM5Q13571 262 aa16.62■□□□□ 0.25
HDDC3-201ENST00000330334 ZRSR2Q15696 482 aaKnown RBP16.62■□□□□ 0.25
HDDC3-201ENST00000330334 PDK4Q16654 411 aa16.62■□□□□ 0.25
HDDC3-201ENST00000330334 PRAMEF9Q5VWM5 478 aa16.62■□□□□ 0.25
HDDC3-201ENST00000330334 ZDHHC24Q6UX98 284 aa16.62■□□□□ 0.25
HDDC3-201ENST00000330334 SYT10Q6XYQ8 523 aa16.62■□□□□ 0.25
HDDC3-201ENST00000330334 ISCA2Q86U28 154 aa16.62■□□□□ 0.25
HDDC3-201ENST00000330334 SCUBE1Q8IWY4 988 aa16.62■□□□□ 0.25
HDDC3-201ENST00000330334 TMEM178AQ8NBL3 297 aa16.62■□□□□ 0.25
HDDC3-201ENST00000330334 QRFPRQ96P65 431 aa16.62■□□□□ 0.25
HDDC3-201ENST00000330334 SIGLEC12Q96PQ1 595 aa16.62■□□□□ 0.25
HDDC3-201ENST00000330334 CD244Q9BZW8 370 aa16.62■□□□□ 0.25
HDDC3-201ENST00000330334 UNKQ9C0B0 810 aaKnown RBP16.62■□□□□ 0.25
HDDC3-201ENST00000330334 REXO4Q9GZR2 422 aaKnown RBP16.62■□□□□ 0.25
HDDC3-201ENST00000330334 CDCP1Q9H5V8 836 aa16.62■□□□□ 0.25
HDDC3-201ENST00000330334 NECTIN3Q9NQS3 549 aa16.62■□□□□ 0.25
HDDC3-201ENST00000330334 CD274Q9NZQ7 290 aa16.62■□□□□ 0.25
HDDC3-201ENST00000330334 SEC14L3Q9UDX4 400 aa16.62■□□□□ 0.25
HDDC3-201ENST00000330334 ASPDHA6ND91 283 aa16.61■□□□□ 0.25
HDDC3-201ENST00000330334 GABRR3A8MPY1 467 aa16.61■□□□□ 0.25
HDDC3-201ENST00000330334 CLDN4O14493 209 aa16.61■□□□□ 0.25
HDDC3-201ENST00000330334 ERI3O43414 337 aaKnown RBP16.61■□□□□ 0.25
HDDC3-201ENST00000330334 MAN1A2O60476 641 aa16.61■□□□□ 0.25
HDDC3-201ENST00000330334 NEURL1O76050 574 aa16.61■□□□□ 0.25
HDDC3-201ENST00000330334 SLC35E2BP0CK96 405 aa16.61■□□□□ 0.25
HDDC3-201ENST00000330334 TRHRP34981 398 aaPredicted RBP16.61■□□□□ 0.25
HDDC3-201ENST00000330334 KCNC1P48547 511 aa16.61■□□□□ 0.25
HDDC3-201ENST00000330334 HSPA7P48741 367 aa16.61■□□□□ 0.25
HDDC3-201ENST00000330334 KCNK10P57789 538 aa16.61■□□□□ 0.25
HDDC3-201ENST00000330334 RUNX2Q13950 521 aa16.61■□□□□ 0.25
HDDC3-201ENST00000330334 DOC2AQ14183 400 aa16.61■□□□□ 0.25
HDDC3-201ENST00000330334 KRTCAP3Q53RY4 240 aa16.61■□□□□ 0.25
HDDC3-201ENST00000330334 XKR6Q5GH73 641 aa16.61■□□□□ 0.25
HDDC3-201ENST00000330334 PAGE2BQ5JRK9 111 aa16.61■□□□□ 0.25
HDDC3-201ENST00000330334 SPINK14Q6IE38 97 aa16.61■□□□□ 0.25
HDDC3-201ENST00000330334 VN1R5Q7Z5H4 357 aa16.61■□□□□ 0.25
HDDC3-201ENST00000330334 CYP4X1Q8N118 509 aa16.61■□□□□ 0.25
HDDC3-201ENST00000330334 PPM1NQ8N819 430 aa16.61■□□□□ 0.25
HDDC3-201ENST00000330334 THAP3Q8WTV1 239 aaPredicted RBP16.61■□□□□ 0.25
HDDC3-201ENST00000330334 SERINC2Q96SA4 455 aa16.61■□□□□ 0.25
HDDC3-201ENST00000330334 NMRAL1Q9HBL8 299 aa16.61■□□□□ 0.25
HDDC3-201ENST00000330334 RNF112Q9ULX5 631 aa16.61■□□□□ 0.25
HDDC3-201ENST00000330334 B3GALT2O43825 422 aa16.6■□□□□ 0.25
HDDC3-201ENST00000330334 UNC5CO95185 931 aa16.6■□□□□ 0.25
HDDC3-201ENST00000330334 MLYCDO95822 493 aa16.6■□□□□ 0.25
HDDC3-201ENST00000330334 SP1P08047 785 aa16.6■□□□□ 0.25
HDDC3-201ENST00000330334 EPORP19235 508 aa16.6■□□□□ 0.25
HDDC3-201ENST00000330334 EEF1DP29692 281 aaKnown RBP16.6■□□□□ 0.25
HDDC3-201ENST00000330334 RAB38P57729 211 aa16.6■□□□□ 0.25
HDDC3-201ENST00000330334 MLF1P58340 268 aa16.6■□□□□ 0.25
HDDC3-201ENST00000330334 RBPJQ06330 500 aa16.6■□□□□ 0.25
HDDC3-201ENST00000330334 TGM3Q08188 693 aa16.6■□□□□ 0.25
HDDC3-201ENST00000330334 RCN2Q14257 317 aa16.6■□□□□ 0.25
HDDC3-201ENST00000330334 TRADDQ15628 312 aa16.6■□□□□ 0.25
HDDC3-201ENST00000330334 HIST2H2ACQ16777 129 aaPredicted RBP16.6■□□□□ 0.25
HDDC3-201ENST00000330334 HIST2H2AA3Q6FI13 130 aa16.6■□□□□ 0.25
HDDC3-201ENST00000330334 SLC25A25Q6KCM7 469 aa16.6■□□□□ 0.25
HDDC3-201ENST00000330334 TRIM40Q6P9F5 258 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms