RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 SEPHS2Q99611 448 aa21.61■■□□□ 1.05
CDX1-201ENST00000231656 CENPKQ9BS16 269 aa21.61■■□□□ 1.05
CDX1-201ENST00000231656 RHBGQ9H310 441 aa21.61■■□□□ 1.05
CDX1-201ENST00000231656 CUEDC1Q9NWM3 386 aaPredicted RBP21.61■■□□□ 1.05
CDX1-201ENST00000231656 UCKL1Q9NWZ5 548 aa21.61■■□□□ 1.05
CDX1-201ENST00000231656 SCOCQ9UIL1 159 aa21.61■■□□□ 1.05
CDX1-201ENST00000231656 V9GYQ6 96 aa21.61■■□□□ 1.05
CDX1-201ENST00000231656 NUP214P35658 2090 aaPredicted RBP21.61■■□□□ 1.05
CDX1-201ENST00000231656 SAC3D1A6NKF1 404 aa21.6■■□□□ 1.05
CDX1-201ENST00000231656 SAP18O00422 153 aaKnown RBP21.6■■□□□ 1.05
CDX1-201ENST00000231656 CXCR6O00574 342 aa21.6■■□□□ 1.05
CDX1-201ENST00000231656 SOCS2O14508 198 aa21.6■■□□□ 1.05
CDX1-201ENST00000231656 PSMB5P28074 263 aa21.6■■□□□ 1.05
CDX1-201ENST00000231656 ZNF763Q0D2J5 394 aa21.6■■□□□ 1.05
CDX1-201ENST00000231656 SLC14A1Q13336 389 aa21.6■■□□□ 1.05
CDX1-201ENST00000231656 GPR18Q14330 331 aa21.6■■□□□ 1.05
CDX1-201ENST00000231656 C6orf52Q5T4I8 152 aa21.6■■□□□ 1.05
CDX1-201ENST00000231656 UGT2A3Q6UWM9 527 aa21.6■■□□□ 1.05
CDX1-201ENST00000231656 ZBTB49Q6ZSB9 765 aa21.6■■□□□ 1.05
CDX1-201ENST00000231656 CLECL1Q8IZS7 167 aa21.6■■□□□ 1.05
CDX1-201ENST00000231656 ZFPM2Q8WW38 1151 aa21.6■■□□□ 1.05
CDX1-201ENST00000231656 CHID1Q9BWS9 393 aa21.6■■□□□ 1.05
CDX1-201ENST00000231656 ATP6V1HQ9UI12 483 aa21.6■■□□□ 1.05
CDX1-201ENST00000231656 BTNL2Q9UIR0 455 aa21.6■■□□□ 1.05
CDX1-201ENST00000231656 SNRNP200O75643 2136 aaKnown RBP21.59■■□□□ 1.05
CDX1-201ENST00000231656 C1QCP02747 245 aa21.59■■□□□ 1.05
CDX1-201ENST00000231656 PTX3P26022 381 aaPredicted RBP21.59■■□□□ 1.05
CDX1-201ENST00000231656 SHMT2P34897 504 aa21.59■■□□□ 1.05
CDX1-201ENST00000231656 REEP5Q00765 189 aa21.59■■□□□ 1.05
CDX1-201ENST00000231656 MAP7Q14244 749 aa21.59■■□□□ 1.05
CDX1-201ENST00000231656 GPR155Q7Z3F1 870 aa21.59■■□□□ 1.05
CDX1-201ENST00000231656 AMIGO1Q86WK6 493 aa21.59■■□□□ 1.05
CDX1-201ENST00000231656 PACRGLQ8N7B6 248 aa21.59■■□□□ 1.05
CDX1-201ENST00000231656 OR4E2Q8NGC2 313 aa21.59■■□□□ 1.05
CDX1-201ENST00000231656 OR4K1Q8NGD4 311 aa21.59■■□□□ 1.05
CDX1-201ENST00000231656 REXO5Q96IC2 774 aaKnown RBP21.59■■□□□ 1.05
CDX1-201ENST00000231656 ELF4Q99607 663 aaPredicted RBP21.59■■□□□ 1.05
CDX1-201ENST00000231656 AIF1LQ9BQI0 150 aa21.59■■□□□ 1.05
CDX1-201ENST00000231656 ADGRE2Q9UHX3 823 aa21.59■■□□□ 1.05
CDX1-201ENST00000231656 HEATR5BQ9P2D3 2071 aa21.59■■□□□ 1.05
CDX1-201ENST00000231656 ZNF318Q5VUA4 2279 aa21.59■■□□□ 1.05
CDX1-201ENST00000231656 ARHGAP10A1A4S6 786 aa21.59■■□□□ 1.05
CDX1-201ENST00000231656 TNFRSF10AO00220 468 aa21.59■■□□□ 1.05
CDX1-201ENST00000231656 TBX6O95947 436 aaPredicted RBP21.59■■□□□ 1.05
CDX1-201ENST00000231656 HOXD12P35452 270 aa21.59■■□□□ 1.05
CDX1-201ENST00000231656 CCR8P51685 355 aa21.59■■□□□ 1.05
CDX1-201ENST00000231656 DEFB133Q30KQ1 61 aa21.59■■□□□ 1.05
CDX1-201ENST00000231656 RNF145Q96MT1 663 aa21.59■■□□□ 1.05
CDX1-201ENST00000231656 REEP4Q9H6H4 257 aa21.59■■□□□ 1.05
CDX1-201ENST00000231656 MYNNQ9NPC7 610 aa21.59■■□□□ 1.05
CDX1-201ENST00000231656 OR6C2Q9NZP2 312 aa21.59■■□□□ 1.05
CDX1-201ENST00000231656 GOLGA4Q13439 2230 aaKnown RBP21.59■■□□□ 1.05
CDX1-201ENST00000231656 CPSF4O95639 269 aaKnown RBP21.58■■□□□ 1.04
CDX1-201ENST00000231656 RXRGP48443 463 aa21.58■■□□□ 1.04
CDX1-201ENST00000231656 HHEXQ03014 270 aa21.58■■□□□ 1.04
CDX1-201ENST00000231656 BNIP3Q12983 259 aa21.58■■□□□ 1.04
CDX1-201ENST00000231656 PLCL1Q15111 1095 aa21.58■■□□□ 1.04
CDX1-201ENST00000231656 RBBP5Q15291 538 aaKnown RBP21.58■■□□□ 1.04
CDX1-201ENST00000231656 ANXA8L1Q5VT79 327 aa21.58■■□□□ 1.04
CDX1-201ENST00000231656 SPRED1Q7Z699 444 aa21.58■■□□□ 1.04
CDX1-201ENST00000231656 SERPINA11Q86U17 422 aa21.58■■□□□ 1.04
CDX1-201ENST00000231656 SLC9B2Q86UD5 537 aa21.58■■□□□ 1.04
CDX1-201ENST00000231656 FAM86B1Q8N7N1 296 aa21.58■■□□□ 1.04
CDX1-201ENST00000231656 C16orf78Q8WTQ4 265 aa21.58■■□□□ 1.04
CDX1-201ENST00000231656 PHF12Q96QT6 1004 aa21.58■■□□□ 1.04
CDX1-201ENST00000231656 PRPF18Q99633 342 aaKnown RBP21.58■■□□□ 1.04
CDX1-201ENST00000231656 SRMSQ9H3Y6 488 aa21.58■■□□□ 1.04
CDX1-201ENST00000231656 NT5DC2Q9H857 520 aa21.58■■□□□ 1.04
CDX1-201ENST00000231656 UBAP1Q9NZ09 502 aa21.58■■□□□ 1.04
CDX1-201ENST00000231656 ADAMTS9Q9P2N4 1935 aa21.58■■□□□ 1.04
CDX1-201ENST00000231656 EVPLLA8MZ36 301 aa21.57■■□□□ 1.04
CDX1-201ENST00000231656 CLIC1O00299 241 aa21.57■■□□□ 1.04
CDX1-201ENST00000231656 ACOX3O15254 700 aa21.57■■□□□ 1.04
CDX1-201ENST00000231656 PRICKLE3O43900 615 aaPredicted RBP21.57■■□□□ 1.04
CDX1-201ENST00000231656 CREG1O75629 220 aa21.57■■□□□ 1.04
CDX1-201ENST00000231656 LDLRP01130 860 aa21.57■■□□□ 1.04
CDX1-201ENST00000231656 MT-ND1P03886 318 aa21.57■■□□□ 1.04
CDX1-201ENST00000231656 GBAP04062 536 aa21.57■■□□□ 1.04
CDX1-201ENST00000231656 RETP07949 1114 aa21.57■■□□□ 1.04
CDX1-201ENST00000231656 ZCCHC18P0CG32 403 aa21.57■■□□□ 1.04
CDX1-201ENST00000231656 RAP2AP10114 183 aa21.57■■□□□ 1.04
CDX1-201ENST00000231656 ENGP17813 658 aa21.57■■□□□ 1.04
CDX1-201ENST00000231656 CXCR2P25025 360 aa21.57■■□□□ 1.04
CDX1-201ENST00000231656 ARRB1P49407 418 aaPredicted RBP21.57■■□□□ 1.04
CDX1-201ENST00000231656 PDE7AQ13946 482 aa21.57■■□□□ 1.04
CDX1-201ENST00000231656 SHBQ15464 509 aa21.57■■□□□ 1.04
CDX1-201ENST00000231656 FAM98BQ52LJ0 330 aaKnown RBP21.57■■□□□ 1.04
CDX1-201ENST00000231656 ZNF385BQ569K4 471 aa21.57■■□□□ 1.04
CDX1-201ENST00000231656 ZNF621Q6ZSS3 439 aa21.57■■□□□ 1.04
CDX1-201ENST00000231656 CBR4Q8N4T8 237 aa21.57■■□□□ 1.04
CDX1-201ENST00000231656 ANKRD53Q8N9V6 530 aa21.57■■□□□ 1.04
CDX1-201ENST00000231656 OR2A1Q8NGT9 310 aa21.57■■□□□ 1.04
CDX1-201ENST00000231656 FAM162AQ96A26 154 aa21.57■■□□□ 1.04
CDX1-201ENST00000231656 C9orf16Q9BUW7 83 aa21.57■■□□□ 1.04
CDX1-201ENST00000231656 OSBPL11Q9BXB4 747 aa21.57■■□□□ 1.04
CDX1-201ENST00000231656 BHLHE41Q9C0J9 482 aaPredicted RBP21.57■■□□□ 1.04
CDX1-201ENST00000231656 ARID1BQ8NFD5 2236 aaPredicted RBP21.57■■□□□ 1.04
CDX1-201ENST00000231656 WDR87Q6ZQQ6 2873 aa21.57■■□□□ 1.04
CDX1-201ENST00000231656 DPPA5A6NC42 116 aa21.56■■□□□ 1.04
CDX1-201ENST00000231656 GALR2O43603 387 aaPredicted RBP21.56■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms