RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 TMEM35AQ53FP2 167 aa5.66□□□□□ -1.5
USP39-213ENST00000467885 GKAP1Q5VSY0 366 aaPredicted RBP5.66□□□□□ -1.5
USP39-213ENST00000467885 PRAMEF17Q5VTA0 474 aa5.66□□□□□ -1.5
USP39-213ENST00000467885 IL23RQ5VWK5 629 aa5.66□□□□□ -1.5
USP39-213ENST00000467885 MRM1Q6IN84 353 aaKnown RBP5.66□□□□□ -1.5
USP39-213ENST00000467885 TMEM214Q6NUQ4 689 aaKnown RBP5.66□□□□□ -1.5
USP39-213ENST00000467885 NOXRED1Q6NXP6 359 aa5.66□□□□□ -1.5
USP39-213ENST00000467885 RIPOR1Q6ZS17 1223 aa5.66□□□□□ -1.5
USP39-213ENST00000467885 CLNKQ7Z7G1 428 aa5.66□□□□□ -1.5
USP39-213ENST00000467885 ASPGQ86U10 573 aa5.66□□□□□ -1.5
USP39-213ENST00000467885 ZFAND4Q86XD8 727 aa5.66□□□□□ -1.5
USP39-213ENST00000467885 FUNDC1Q8IVP5 155 aa5.66□□□□□ -1.5
USP39-213ENST00000467885 RIMKLAQ8IXN7 391 aa5.66□□□□□ -1.5
USP39-213ENST00000467885 FITM2Q8N6M3 262 aa5.66□□□□□ -1.5
USP39-213ENST00000467885 BMPERQ8N8U9 685 aa5.66□□□□□ -1.5
USP39-213ENST00000467885 CAMKVQ8NCB2 501 aa5.66□□□□□ -1.5
USP39-213ENST00000467885 RCBTB1Q8NDN9 531 aa5.66□□□□□ -1.5
USP39-213ENST00000467885 TTLQ8NG68 377 aa5.66□□□□□ -1.5
USP39-213ENST00000467885 OR2L5Q8NG80 312 aa5.66□□□□□ -1.5
USP39-213ENST00000467885 OR1L3Q8NH93 324 aa5.66□□□□□ -1.5
USP39-213ENST00000467885 WDR48Q8TAF3 677 aa5.66□□□□□ -1.5
USP39-213ENST00000467885 UTP15Q8TED0 518 aaKnown RBP5.66□□□□□ -1.5
USP39-213ENST00000467885 CCT6BQ92526 530 aa5.66□□□□□ -1.5
USP39-213ENST00000467885 UCN3Q969E3 161 aa5.66□□□□□ -1.5
USP39-213ENST00000467885 RGMAQ96B86 450 aa5.66□□□□□ -1.5
USP39-213ENST00000467885 ZNF501Q96CX3 271 aaPredicted RBP5.66□□□□□ -1.5
USP39-213ENST00000467885 EGLN2Q96KS0 407 aa5.66□□□□□ -1.5
USP39-213ENST00000467885 TEX37Q96LM6 180 aa5.66□□□□□ -1.5
USP39-213ENST00000467885 CCDC74BQ96LY2 380 aa5.66□□□□□ -1.5
USP39-213ENST00000467885 PPP3R2Q96LZ3 170 aa5.66□□□□□ -1.5
USP39-213ENST00000467885 RILPQ96NA2 401 aa5.66□□□□□ -1.5
USP39-213ENST00000467885 TEFMQ96QE5 360 aaKnown RBP5.66□□□□□ -1.5
USP39-213ENST00000467885 TBCDQ9BTW9 1192 aa5.66□□□□□ -1.5
USP39-213ENST00000467885 CCDC106Q9BWC9 280 aa5.66□□□□□ -1.5
USP39-213ENST00000467885 SORBS1Q9BX66 1292 aaKnown RBP5.66□□□□□ -1.5
USP39-213ENST00000467885 MRPL1Q9BYD6 325 aaKnown RBP5.66□□□□□ -1.5
USP39-213ENST00000467885 ACTL8Q9H568 366 aa5.66□□□□□ -1.5
USP39-213ENST00000467885 DDX31Q9H8H2 851 aaKnown RBP5.66□□□□□ -1.5
USP39-213ENST00000467885 LRTM1Q9HBL6 345 aa5.66□□□□□ -1.5
USP39-213ENST00000467885 TCF7L2Q9NQB0 619 aa5.66□□□□□ -1.5
USP39-213ENST00000467885 FBXO8Q9NRD0 319 aa5.66□□□□□ -1.5
USP39-213ENST00000467885 FGF21Q9NSA1 209 aa5.66□□□□□ -1.5
USP39-213ENST00000467885 RIC8BQ9NVN3 520 aa5.66□□□□□ -1.5
USP39-213ENST00000467885 NMRK1Q9NWW6 199 aa5.66□□□□□ -1.5
USP39-213ENST00000467885 SIDT1Q9NXL6 827 aaKnown RBP5.66□□□□□ -1.5
USP39-213ENST00000467885 SERTAD3Q9UJW9 196 aa5.66□□□□□ -1.5
USP39-213ENST00000467885 SLC12A4Q9UP95 1085 aa5.66□□□□□ -1.5
USP39-213ENST00000467885 RUVBL1Q9Y265 456 aaKnown RBP5.66□□□□□ -1.5
USP39-213ENST00000467885 DLGAP4Q9Y2H0 992 aa5.66□□□□□ -1.5
USP39-213ENST00000467885 ASB4Q9Y574 426 aa5.66□□□□□ -1.5
USP39-213ENST00000467885 SLC22A7Q9Y694 548 aa5.66□□□□□ -1.5
USP39-213ENST00000467885 DMDP11532 3685 aa5.66□□□□□ -1.5
USP39-213ENST00000467885 EP300Q09472 2414 aaPredicted RBP5.66□□□□□ -1.5
USP39-213ENST00000467885 ADAMTS9Q9P2N4 1935 aa5.66□□□□□ -1.5
USP39-213ENST00000467885 ASXL3Q9C0F0 2248 aa5.65□□□□□ -1.5
USP39-213ENST00000467885 HYKKA2RU49 373 aa5.65□□□□□ -1.5
USP39-213ENST00000467885 GABRR3A8MPY1 467 aa5.65□□□□□ -1.5
USP39-213ENST00000467885 CAPN14A8MX76 684 aa5.65□□□□□ -1.5
USP39-213ENST00000467885 D6RAR5 112 aa5.65□□□□□ -1.5
USP39-213ENST00000467885 PLPP1O14494 284 aa5.65□□□□□ -1.5
USP39-213ENST00000467885 TXNDC9O14530 226 aa5.65□□□□□ -1.5
USP39-213ENST00000467885 UBDO15205 165 aa5.65□□□□□ -1.5
USP39-213ENST00000467885 ZSCAN9O15535 394 aaPredicted RBP5.65□□□□□ -1.5
USP39-213ENST00000467885 ZNF749O43361 778 aa5.65□□□□□ -1.5
USP39-213ENST00000467885 PROM1O43490 865 aa5.65□□□□□ -1.5
USP39-213ENST00000467885 TMPRSS11DO60235 418 aa5.65□□□□□ -1.5
USP39-213ENST00000467885 RFPL3O75679 317 aa5.65□□□□□ -1.5
USP39-213ENST00000467885 RASSF9O75901 435 aa5.65□□□□□ -1.5
USP39-213ENST00000467885 SEMA3DO95025 777 aa5.65□□□□□ -1.5
USP39-213ENST00000467885 ONECUT2O95948 504 aa5.65□□□□□ -1.5
USP39-213ENST00000467885 GBAP04062 536 aa5.65□□□□□ -1.5
USP39-213ENST00000467885 EIF2S1P05198 315 aaKnown RBP5.65□□□□□ -1.5
USP39-213ENST00000467885 SERPIND1P05546 499 aa5.65□□□□□ -1.5
USP39-213ENST00000467885 KLK1P06870 262 aa5.65□□□□□ -1.5
USP39-213ENST00000467885 G6PDP11413 515 aa5.65□□□□□ -1.5
USP39-213ENST00000467885 CDK4P11802 303 aa5.65□□□□□ -1.5
USP39-213ENST00000467885 FGF5P12034 268 aa5.65□□□□□ -1.5
USP39-213ENST00000467885 NCF2P19878 526 aaPredicted RBP5.65□□□□□ -1.5
USP39-213ENST00000467885 ATP5A1P25705 553 aaKnown RBP5.65□□□□□ -1.5
USP39-213ENST00000467885 IL12AP29459 219 aa5.65□□□□□ -1.5
USP39-213ENST00000467885 ADSLP30566 484 aaPredicted RBP5.65□□□□□ -1.5
USP39-213ENST00000467885 CCKBRP32239 447 aa5.65□□□□□ -1.5
USP39-213ENST00000467885 MRPL19P49406 292 aaKnown RBP5.65□□□□□ -1.5
USP39-213ENST00000467885 PLA2G16P53816 162 aa5.65□□□□□ -1.5
USP39-213ENST00000467885 CLDN8P56748 225 aa5.65□□□□□ -1.5
USP39-213ENST00000467885 RAB8AP61006 207 aa5.65□□□□□ -1.5
USP39-213ENST00000467885 UFM1P61960 85 aa5.65□□□□□ -1.5
USP39-213ENST00000467885 ERVK-8P63133 956 aa5.65□□□□□ -1.5
USP39-213ENST00000467885 PHC1P78364 1004 aa5.65□□□□□ -1.5
USP39-213ENST00000467885 BTN3A2P78410 334 aa5.65□□□□□ -1.5
USP39-213ENST00000467885 CYP4F3Q08477 520 aa5.65□□□□□ -1.5
USP39-213ENST00000467885 SLAMF1Q13291 335 aa5.65□□□□□ -1.5
USP39-213ENST00000467885 COL9A2Q14055 689 aaPredicted RBP5.65□□□□□ -1.5
USP39-213ENST00000467885 FAM53BQ14153 422 aa5.65□□□□□ -1.5
USP39-213ENST00000467885 SPIDRQ14159 915 aa5.65□□□□□ -1.5
USP39-213ENST00000467885 GPR19Q15760 415 aa5.65□□□□□ -1.5
USP39-213ENST00000467885 FAM214AQ32MH5 1076 aa5.65□□□□□ -1.5
USP39-213ENST00000467885 GALNTL6Q49A17 601 aa5.65□□□□□ -1.5
USP39-213ENST00000467885 ATP6AP1LQ52LC2 224 aa5.65□□□□□ -1.5
USP39-213ENST00000467885 TOR1AIP1Q5JTV8 583 aa5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms