RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 RETREG3Q86VR2 466 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 CCDC103Q8IW40 242 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 CYP4Z2PQ8N1L4 340 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 AMER2Q8N7J2 671 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 MFSD2AQ8NA29 543 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 OR52B6Q8NGF0 335 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 RNASE11Q8TAA1 199 aaKnown RBP10.09□□□□□ -0.79
LIG1-220ENST00000601091 CSGALNACT1Q8TDX6 532 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 CLP1Q92989 425 aaKnown RBP10.09□□□□□ -0.79
LIG1-220ENST00000601091 REPS1Q96D71 796 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 ATOH8Q96SQ7 321 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 PCTPQ9UKL6 214 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 SESN1Q9Y6P5 492 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 TEX51A0A1B0GUA7 166 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 TARM1B6A8C7 271 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 CLDN25C9JDP6 229 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 MED26O95402 600 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 SERPIND1P05546 499 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 HK1P19367 917 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 PPIBP23284 216 aaKnown RBP10.09□□□□□ -0.79
LIG1-220ENST00000601091 OR4D2P58180 307 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 CAMK2GQ13555 558 aaPredicted RBP10.09□□□□□ -0.79
LIG1-220ENST00000601091 DNAH12Q6ZR08 3092 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 ADGRG5Q8IZF4 528 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 POF1BQ8WVV4 589 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 TMEM125Q96AQ2 219 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 C1QTNF7Q9BXJ2 289 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 ATG10Q9H0Y0 220 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 GJD2Q9UKL4 321 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 CORO2BQ9UQ03 480 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 RNF11Q9Y3C5 154 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 LOC730098B7Z3J9 87 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 CACNG3O60359 315 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 PTBP1P26599 531 aaKnown RBP eCLIP10.08□□□□□ -0.87e-7■■■■□ 23
LIG1-220ENST00000601091 KCNC1P48547 511 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 PRKCZQ05513 592 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 PIGFQ07326 219 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 SLC3A1Q07837 685 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 C17orf67Q0P5P2 114 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 RAB39AQ14964 217 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 SWI5Q1ZZU3 235 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 ARHGAP15Q53QZ3 475 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 PAGE2BQ5JRK9 111 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 PAGE3Q5JUK9 113 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 DOK6Q6PKX4 331 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 ADCK2Q7Z695 626 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 TIGD4Q8IY51 512 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 MTERF3Q96E29 417 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 PTPN18Q99952 460 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 AGPAT4Q9NRZ5 378 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 RASSF1Q9NS23 344 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 IKZF3Q9UKT9 509 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 KCNE2Q9Y6J6 123 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 SERTM1A2A2V5 107 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 CENPXA8MT69 81 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 ARHGEF9O43307 516 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 RGS10O43665 173 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 GRK3P35626 688 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 C19orf57Q0VDD7 668 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 CNTN1Q12860 1018 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 CHST9Q7L1S5 443 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 ZFAND4Q86XD8 727 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 METTL4Q8N3J2 472 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 RAB42Q8N4Z0 105 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 OR8J3Q8NGG0 315 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 MYDGFQ969H8 173 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 EXOSC8Q96B26 276 aaKnown RBP10.08□□□□□ -0.8
LIG1-220ENST00000601091 ZNF558Q96NG5 402 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 RDH12Q96NR8 316 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 RTP3Q9BQQ7 232 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 GPR62Q9BZJ7 368 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 TINAGQ9UJW2 476 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 GPR45Q9Y5Y3 372 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 RHPN2P1A8MT19 583 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 UBFD1O14562 309 aaKnown RBP10.08□□□□□ -0.8
LIG1-220ENST00000601091 PCDH17O14917 1159 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 ABCB7O75027 752 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 FABP3P05413 133 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 HLCSP50747 726 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 MAPK12P53778 367 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 CCL23P55773 120 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 CHIT1Q13231 466 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 RCAN2Q14206 197 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 TUSC1Q2TAM9 212 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 KLHL26Q53HC5 615 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 CPTPQ5TA50 214 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 RAET1GQ6H3X3 334 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 CARM1Q86X55 608 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 NRSN1Q8IZ57 195 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 TTC9BQ8N6N2 239 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 KDF1Q8NAX2 398 aaPredicted RBP10.08□□□□□ -0.8
LIG1-220ENST00000601091 CRELD1Q96HD1 420 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 SMURF2Q9HAU4 748 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 SPG21Q9NZD8 308 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 GRHPRQ9UBQ7 328 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 SSC5DA1L4H1 1573 aa10.08□□□□□ -0.8
LIG1-220ENST00000601091 LOC100506127A0A0U1RQW1 187 aa10.07□□□□□ -0.8
LIG1-220ENST00000601091 METTL21EPA6NDL7 271 aa10.07□□□□□ -0.8
LIG1-220ENST00000601091 DRGXA6NNA5 263 aa10.07□□□□□ -0.8
LIG1-220ENST00000601091 QSOX1O00391 747 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms