RNA–Protein interactions for RNA: ENST00000621856.1

SPAST-204, Transcript of spastin, humanhuman

TSL 1 (best) BASIC

Gene SPAST, Length 1,715 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPAST-204ENST00000621856 GCC1Q96CN9 775 aa26.9■■□□□ 1.9
SPAST-204ENST00000621856 CCDC9Q9Y3X0 531 aaKnown RBP26.9■■□□□ 1.9
SPAST-204ENST00000621856 ATP10DQ9P241 1426 aa26.9■■□□□ 1.9
SPAST-204ENST00000621856 GNAI3P08754 354 aa26.9■■□□□ 1.9
SPAST-204ENST00000621856 RPAP2Q8IXW5 612 aaPredicted RBP26.9■■□□□ 1.9
SPAST-204ENST00000621856 ANKRD44Q8N8A2 993 aa26.9■■□□□ 1.9
SPAST-204ENST00000621856 TNS2Q63HR2 1409 aa26.9■■□□□ 1.9
SPAST-204ENST00000621856 GLI3P10071 1580 aa26.89■■□□□ 1.9
SPAST-204ENST00000621856 SRCIN1Q9C0H9 1055 aa26.89■■□□□ 1.9
SPAST-204ENST00000621856 PDIA6Q15084 440 aa26.88■■□□□ 1.89
SPAST-204ENST00000621856 CEP85Q6P2H3 762 aa26.88■■□□□ 1.89
SPAST-204ENST00000621856 USP16Q9Y5T5 823 aa26.88■■□□□ 1.89
SPAST-204ENST00000621856 ADCY9O60503 1353 aa26.88■■□□□ 1.89
SPAST-204ENST00000621856 SPATA31A5Q5VU36 1347 aa26.88■■□□□ 1.89
SPAST-204ENST00000621856 SPATA31A7Q8IWB4 1347 aa26.88■■□□□ 1.89
SPAST-204ENST00000621856 DDX58O95786 925 aaKnown RBP26.87■■□□□ 1.89
SPAST-204ENST00000621856 GNAI2P04899 355 aa26.87■■□□□ 1.89
SPAST-204ENST00000621856 BACH2Q9BYV9 841 aa26.87■■□□□ 1.89
SPAST-204ENST00000621856 KCPQ6ZWJ8 1503 aa26.87■■□□□ 1.89
SPAST-204ENST00000621856 ITGB4P16144 1822 aa26.86■■□□□ 1.89
SPAST-204ENST00000621856 MYL6BP14649 208 aa26.86■■□□□ 1.89
SPAST-204ENST00000621856 KSR2Q6VAB6 950 aa26.86■■□□□ 1.89
SPAST-204ENST00000621856 NUCB1Q02818 461 aa26.85■■□□□ 1.89
SPAST-204ENST00000621856 AIMP1Q12904 312 aaKnown RBP26.85■■□□□ 1.89
SPAST-204ENST00000621856 C8orf37Q96NL8 207 aa26.85■■□□□ 1.89
SPAST-204ENST00000621856 MAP3K2Q9Y2U5 619 aa26.85■■□□□ 1.89
SPAST-204ENST00000621856 LRP6O75581 1613 aa26.85■■□□□ 1.89
SPAST-204ENST00000621856 BEND3Q5T5X7 828 aa26.85■■□□□ 1.89
SPAST-204ENST00000621856 NGLY1Q96IV0 654 aa26.85■■□□□ 1.89
SPAST-204ENST00000621856 FAM161AQ3B820 660 aa26.84■■□□□ 1.89
SPAST-204ENST00000621856 PTCD1O75127 700 aaKnown RBP26.83■■□□□ 1.89
SPAST-204ENST00000621856 DDB1Q16531 1140 aa26.83■■□□□ 1.89
SPAST-204ENST00000621856 ANKRD45Q5TZF3 282 aa26.83■■□□□ 1.89
SPAST-204ENST00000621856 UNC5CLQ8IV45 518 aa26.83■■□□□ 1.89
SPAST-204ENST00000621856 SPATA31A6Q5VVP1 1343 aa26.83■■□□□ 1.89
SPAST-204ENST00000621856 HMMRO75330 724 aa26.82■■□□□ 1.88
SPAST-204ENST00000621856 UBTFL1P0CB47 393 aaPredicted RBP26.82■■□□□ 1.88
SPAST-204ENST00000621856 CHD1LQ86WJ1 897 aa26.82■■□□□ 1.88
SPAST-204ENST00000621856 USP44Q9H0E7 712 aa26.82■■□□□ 1.88
SPAST-204ENST00000621856 PIGBQ92521 554 aa26.82■■□□□ 1.88
SPAST-204ENST00000621856 LNPKQ9C0E8 428 aa26.82■■□□□ 1.88
SPAST-204ENST00000621856 XAGE3Q8WTP9 111 aa26.81■■□□□ 1.88
SPAST-204ENST00000621856 BARGINQ6ZT62 677 aa26.8■■□□□ 1.88
SPAST-204ENST00000621856 DCTPP1Q9H773 170 aa26.8■■□□□ 1.88
SPAST-204ENST00000621856 KAT6BQ8WYB5 2073 aa26.8■■□□□ 1.88
SPAST-204ENST00000621856 PIP4K2AP48426 406 aaPredicted RBP26.79■■□□□ 1.88
SPAST-204ENST00000621856 COPS6Q7L5N1 327 aa26.79■■□□□ 1.88
SPAST-204ENST00000621856 RIC3Q7Z5B4 369 aa26.79■■□□□ 1.88
SPAST-204ENST00000621856 ERBB4Q15303 1308 aa26.79■■□□□ 1.88
SPAST-204ENST00000621856 ALDH1L1O75891 902 aa26.79■■□□□ 1.88
SPAST-204ENST00000621856 LRRFIP2Q9Y608 721 aaKnown RBP26.79■■□□□ 1.88
SPAST-204ENST00000621856 DOT1LQ8TEK3 1739 aa26.78■■□□□ 1.88
SPAST-204ENST00000621856 ASAP1Q9ULH1 1129 aa26.78■■□□□ 1.88
SPAST-204ENST00000621856 C8orf34Q49A92 452 aa26.77■■□□□ 1.88
SPAST-204ENST00000621856 BCL9O00512 1426 aa26.76■■□□□ 1.88
SPAST-204ENST00000621856 SYTL4Q96C24 671 aaPredicted RBP26.76■■□□□ 1.88
SPAST-204ENST00000621856 ATG3Q9NT62 314 aa26.76■■□□□ 1.88
SPAST-204ENST00000621856 ZBTB47Q9UFB7 747 aaPredicted RBP26.76■■□□□ 1.88
SPAST-204ENST00000621856 BCL9LQ86UU0 1499 aa26.76■■□□□ 1.87
SPAST-204ENST00000621856 VPS72Q15906 364 aa26.76■■□□□ 1.87
SPAST-204ENST00000621856 LRP10Q7Z4F1 713 aa26.76■■□□□ 1.87
SPAST-204ENST00000621856 LINS1Q8NG48 757 aa26.75■■□□□ 1.87
SPAST-204ENST00000621856 HSPA1LP34931 641 aa26.74■■□□□ 1.87
SPAST-204ENST00000621856 ATP8B2P98198 1209 aa26.74■■□□□ 1.87
SPAST-204ENST00000621856 NEXNQ0ZGT2 675 aa26.73■■□□□ 1.87
SPAST-204ENST00000621856 ANKRD13DQ6ZTN6 518 aa26.73■■□□□ 1.87
SPAST-204ENST00000621856 FNBP4Q8N3X1 1017 aaPredicted RBP26.73■■□□□ 1.87
SPAST-204ENST00000621856 RBM42Q9BTD8 480 aaKnown RBP26.73■■□□□ 1.87
SPAST-204ENST00000621856 C9orf78Q9NZ63 289 aaPredicted RBP26.73■■□□□ 1.87
SPAST-204ENST00000621856 NBPF26B4DH59 902 aa26.72■■□□□ 1.87
SPAST-204ENST00000621856 NBPF7P0C2Y1 421 aaPredicted RBP26.72■■□□□ 1.87
SPAST-204ENST00000621856 PRIM1P49642 420 aaKnown RBP26.72■■□□□ 1.87
SPAST-204ENST00000621856 CWF19L2Q2TBE0 894 aaKnown RBP26.72■■□□□ 1.87
SPAST-204ENST00000621856 NBPF14Q5TI25 921 aa26.72■■□□□ 1.87
SPAST-204ENST00000621856 MEX3CQ5U5Q3 659 aaKnown RBP26.72■■□□□ 1.87
SPAST-204ENST00000621856 NBPF10Q6P3W6 841 aaKnown RBP26.72■■□□□ 1.87
SPAST-204ENST00000621856 NBPF15Q8N660 670 aa26.72■■□□□ 1.87
SPAST-204ENST00000621856 A1BGP04217 495 aa26.71■■□□□ 1.87
SPAST-204ENST00000621856 FAM98CQ17RN3 349 aaKnown RBP26.71■■□□□ 1.87
SPAST-204ENST00000621856 VSIG10Q8N0Z9 540 aa26.71■■□□□ 1.87
SPAST-204ENST00000621856 MARCH10Q8NA82 808 aaPredicted RBP26.71■■□□□ 1.87
SPAST-204ENST00000621856 TEX13AQ9BXU3 409 aaPredicted RBP26.71■■□□□ 1.87
SPAST-204ENST00000621856 ARFGEF2Q9Y6D5 1785 aa26.71■■□□□ 1.87
SPAST-204ENST00000621856 A0A0G2JS52 829 aa26.7■■□□□ 1.87
SPAST-204ENST00000621856 METTL22Q9BUU2 404 aaPredicted RBP26.7■■□□□ 1.87
SPAST-204ENST00000621856 USP21Q9UK80 565 aa26.7■■□□□ 1.87
SPAST-204ENST00000621856 TNKS1BP1Q9C0C2 1729 aaKnown RBP26.7■■□□□ 1.86
SPAST-204ENST00000621856 PNMA6EA0A0J9YXQ4 647 aa26.7■■□□□ 1.86
SPAST-204ENST00000621856 MYD88Q99836 296 aa26.7■■□□□ 1.86
SPAST-204ENST00000621856 HDAC5Q9UQL6 1122 aa26.69■■□□□ 1.86
SPAST-204ENST00000621856 APBB1O00213 710 aa26.68■■□□□ 1.86
SPAST-204ENST00000621856 DNAJC10Q8IXB1 793 aa26.68■■□□□ 1.86
SPAST-204ENST00000621856 PLBD2Q8NHP8 589 aa26.68■■□□□ 1.86
SPAST-204ENST00000621856 IGKV5-2P06315 115 aa26.67■■□□□ 1.86
SPAST-204ENST00000621856 ACSBG1Q96GR2 724 aa26.67■■□□□ 1.86
SPAST-204ENST00000621856 AFDNP55196 1824 aaKnown RBP26.67■■□□□ 1.86
SPAST-204ENST00000621856 GRM8O00222 908 aa26.66■■□□□ 1.86
SPAST-204ENST00000621856 STARD3NLO95772 234 aa26.66■■□□□ 1.86
SPAST-204ENST00000621856 BCL11AQ9H165 835 aa26.66■■□□□ 1.86
SPAST-204ENST00000621856 NEURL1BA8MQ27 555 aa26.65■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms