RNA–Protein interactions for RNA: ENST00000570023.1

VPS39-212, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 337 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-212ENST00000570023 GPR161Q8N6U8 529 aaKnown RBP6.15□□□□□ -1.42
VPS39-212ENST00000570023 C1orf216Q8TAB5 229 aa6.15□□□□□ -1.42
VPS39-212ENST00000570023 CCDC97Q96F63 343 aaPredicted RBP6.15□□□□□ -1.42
VPS39-212ENST00000570023 C1orf115Q9H7X2 142 aa6.15□□□□□ -1.42
VPS39-212ENST00000570023 RBM19Q9Y4C8 960 aaKnown RBP6.15□□□□□ -1.42
VPS39-212ENST00000570023 USP3Q9Y6I4 520 aa6.15□□□□□ -1.42
VPS39-212ENST00000570023 SFI1A8K8P3 1242 aa6.14□□□□□ -1.43
VPS39-212ENST00000570023 H7C1W4 665 aa6.14□□□□□ -1.43
VPS39-212ENST00000570023 MSX1P28360 303 aa6.14□□□□□ -1.43
VPS39-212ENST00000570023 ELOAQ14241 798 aaKnown RBP6.14□□□□□ -1.43
VPS39-212ENST00000570023 TEAD4Q15561 434 aa6.14□□□□□ -1.43
VPS39-212ENST00000570023 POTEAQ6S8J7 498 aa6.14□□□□□ -1.43
VPS39-212ENST00000570023 GAS2L1Q99501 681 aaPredicted RBP6.14□□□□□ -1.43
VPS39-212ENST00000570023 PCGF6Q9BYE7 350 aa6.14□□□□□ -1.43
VPS39-212ENST00000570023 RFX1P22670 979 aa6.13□□□□□ -1.43
VPS39-212ENST00000570023 PLA2G4AP47712 749 aa6.13□□□□□ -1.43
VPS39-212ENST00000570023 LBRQ14739 615 aaKnown RBP6.13□□□□□ -1.43
VPS39-212ENST00000570023 RIPOR1Q6ZS17 1223 aa6.13□□□□□ -1.43
VPS39-212ENST00000570023 SLC9A9Q8IVB4 645 aa6.13□□□□□ -1.43
VPS39-212ENST00000570023 TSEN2Q8NCE0 465 aaKnown RBP6.13□□□□□ -1.43
VPS39-212ENST00000570023 ZDHHC1Q8WTX9 485 aa6.13□□□□□ -1.43
VPS39-212ENST00000570023 ZNF837Q96EG3 531 aaPredicted RBP6.13□□□□□ -1.43
VPS39-212ENST00000570023 CRISPLD1Q9H336 500 aa6.13□□□□□ -1.43
VPS39-212ENST00000570023 ATG7O95352 703 aa6.12□□□□□ -1.43
VPS39-212ENST00000570023 THBS1P07996 1170 aa6.12□□□□□ -1.43
VPS39-212ENST00000570023 ATP4AP20648 1035 aa6.12□□□□□ -1.43
VPS39-212ENST00000570023 NOS2P35228 1153 aa6.12□□□□□ -1.43
VPS39-212ENST00000570023 HIRAP54198 1017 aaPredicted RBP6.12□□□□□ -1.43
VPS39-212ENST00000570023 STAG2Q8N3U4 1231 aa6.12□□□□□ -1.43
VPS39-212ENST00000570023 CCDC82Q8N4S0 544 aa6.12□□□□□ -1.43
VPS39-212ENST00000570023 GAS2L2Q8NHY3 880 aa6.12□□□□□ -1.43
VPS39-212ENST00000570023 L3MBTL2Q969R5 705 aa6.12□□□□□ -1.43
VPS39-212ENST00000570023 TSPAN10Q9H1Z9 355 aaPredicted RBP6.12□□□□□ -1.43
VPS39-212ENST00000570023 ZDHHC3Q9NYG2 299 aa6.12□□□□□ -1.43
VPS39-212ENST00000570023 CABP1Q9NZU7 370 aa6.12□□□□□ -1.43
VPS39-212ENST00000570023 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.11□□□□□ -1.43
VPS39-212ENST00000570023 CDC14CA4D256 554 aa6.11□□□□□ -1.43
VPS39-212ENST00000570023 C21orf2O43822 256 aa6.11□□□□□ -1.43
VPS39-212ENST00000570023 UBAP2LQ14157 1087 aaKnown RBP6.11□□□□□ -1.43
VPS39-212ENST00000570023 NBPF1Q3BBV0 1214 aa6.11□□□□□ -1.43
VPS39-212ENST00000570023 CDCA8Q53HL2 280 aa6.11□□□□□ -1.43
VPS39-212ENST00000570023 FAM200AQ8TCP9 573 aa6.11□□□□□ -1.43
VPS39-212ENST00000570023 C7orf43Q8WVR3 580 aa6.11□□□□□ -1.43
VPS39-212ENST00000570023 PBXIP1Q96AQ6 731 aa6.11□□□□□ -1.43
VPS39-212ENST00000570023 NUCKS1Q9H1E3 243 aaKnown RBP6.11□□□□□ -1.43
VPS39-212ENST00000570023 GPAMQ9HCL2 828 aa6.11□□□□□ -1.43
VPS39-212ENST00000570023 TIMELESSQ9UNS1 1208 aa6.11□□□□□ -1.43
VPS39-212ENST00000570023 ATAD2Q6PL18 1390 aa6.1□□□□□ -1.43
VPS39-212ENST00000570023 EML1O00423 815 aa6.1□□□□□ -1.43
VPS39-212ENST00000570023 CSB-PGBD3P0DP91 1061 aa6.1□□□□□ -1.43
VPS39-212ENST00000570023 PSMA6P60900 246 aaKnown RBP6.1□□□□□ -1.43
VPS39-212ENST00000570023 KRT76Q01546 638 aa6.1□□□□□ -1.43
VPS39-212ENST00000570023 RNFT1Q5M7Z0 435 aa6.1□□□□□ -1.43
VPS39-212ENST00000570023 TBCELQ5QJ74 424 aa6.1□□□□□ -1.43
VPS39-212ENST00000570023 FOXR1Q6PIV2 292 aa6.1□□□□□ -1.43
VPS39-212ENST00000570023 PGBD3Q8N328 593 aa6.1□□□□□ -1.43
VPS39-212ENST00000570023 AIDAQ96BJ3 306 aa6.1□□□□□ -1.43
VPS39-212ENST00000570023 COL25A1Q9BXS0 654 aaPredicted RBP6.1□□□□□ -1.43
VPS39-212ENST00000570023 RUBCNLQ9H714 662 aa6.1□□□□□ -1.43
VPS39-212ENST00000570023 NOVA2Q9UNW9 492 aaKnown RBP6.1□□□□□ -1.43
VPS39-212ENST00000570023 SERTM1A2A2V5 107 aa6.09□□□□□ -1.43
VPS39-212ENST00000570023 GAS6Q14393 721 aa6.09□□□□□ -1.43
VPS39-212ENST00000570023 C1orf53Q5VUE5 145 aa6.09□□□□□ -1.43
VPS39-212ENST00000570023 NLRP8Q86W28 1048 aa6.09□□□□□ -1.43
VPS39-212ENST00000570023 GTPBP3Q969Y2 492 aaKnown RBP6.09□□□□□ -1.43
VPS39-212ENST00000570023 HINFPQ9BQA5 517 aa6.09□□□□□ -1.43
VPS39-212ENST00000570023 C2orf49Q9BVC5 232 aaPredicted RBP6.09□□□□□ -1.43
VPS39-212ENST00000570023 ZMIZ1Q9ULJ6 1067 aa6.09□□□□□ -1.43
VPS39-212ENST00000570023 GPC6Q9Y625 555 aaPredicted RBP6.09□□□□□ -1.43
VPS39-212ENST00000570023 PARP3Q9Y6F1 533 aa6.09□□□□□ -1.43
VPS39-212ENST00000570023 TATP17735 454 aaPredicted RBP6.08□□□□□ -1.44
VPS39-212ENST00000570023 IGFBP4P22692 258 aa6.08□□□□□ -1.44
VPS39-212ENST00000570023 LORP23490 312 aaPredicted RBP6.08□□□□□ -1.44
VPS39-212ENST00000570023 WEE1P30291 646 aa6.08□□□□□ -1.44
VPS39-212ENST00000570023 TXLNAP40222 546 aa6.08□□□□□ -1.44
VPS39-212ENST00000570023 INSM1Q01101 510 aaPredicted RBP6.08□□□□□ -1.44
VPS39-212ENST00000570023 FAM69CQ0P6D2 419 aa6.08□□□□□ -1.44
VPS39-212ENST00000570023 SWI5Q1ZZU3 235 aa6.08□□□□□ -1.44
VPS39-212ENST00000570023 EFHC2Q5JST6 749 aa6.08□□□□□ -1.44
VPS39-212ENST00000570023 SCG3Q8WXD2 468 aaKnown RBP6.08□□□□□ -1.44
VPS39-212ENST00000570023 ZIC5Q96T25 663 aa6.08□□□□□ -1.44
VPS39-212ENST00000570023 CFHR5Q9BXR6 569 aa6.08□□□□□ -1.44
VPS39-212ENST00000570023 ZNF232Q9UNY5 417 aa6.08□□□□□ -1.44
VPS39-212ENST00000570023 A0A1W2PNR3 127 aa6.07□□□□□ -1.44
VPS39-212ENST00000570023 PPP1R12BO60237 982 aaPredicted RBP6.07□□□□□ -1.44
VPS39-212ENST00000570023 PPP1R15AO75807 674 aaPredicted RBP6.07□□□□□ -1.44
VPS39-212ENST00000570023 SLURP2P0DP57 97 aa6.07□□□□□ -1.44
VPS39-212ENST00000570023 SH3PXD2AQ5TCZ1 1133 aa6.07□□□□□ -1.44
VPS39-212ENST00000570023 FIGNL1Q6PIW4 674 aa6.07□□□□□ -1.44
VPS39-212ENST00000570023 HOMEZQ8IX15 550 aa6.07□□□□□ -1.44
VPS39-212ENST00000570023 TRERF1Q96PN7 1200 aa6.07□□□□□ -1.44
VPS39-212ENST00000570023 NDFIP2Q9NV92 336 aa6.07□□□□□ -1.44
VPS39-212ENST00000570023 CHMP3Q9Y3E7 222 aa6.07□□□□□ -1.44
VPS39-212ENST00000570023 PDIA4P13667 645 aaKnown RBP6.06□□□□□ -1.44
VPS39-212ENST00000570023 ARSJQ5FYB0 599 aaPredicted RBP6.06□□□□□ -1.44
VPS39-212ENST00000570023 SAMD5Q5TGI4 173 aa6.06□□□□□ -1.44
VPS39-212ENST00000570023 STK32AQ8WU08 396 aa6.06□□□□□ -1.44
VPS39-212ENST00000570023 CNTNAP3BQ96NU0 1288 aa6.06□□□□□ -1.44
VPS39-212ENST00000570023 CNTNAP3Q9BZ76 1288 aa6.06□□□□□ -1.44
VPS39-212ENST00000570023 GPR25O00155 361 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms