RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 RBM42Q9BTD8 480 aaKnown RBP25.02■■□□□ 1.6
CLN3-230ENST00000568076 SLC52A2Q9HAB3 445 aa25.02■■□□□ 1.6
CLN3-230ENST00000568076 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.02■■□□□ 1.6
CLN3-230ENST00000568076 SPG7Q9UQ90 795 aa25.02■■□□□ 1.6
CLN3-230ENST00000568076 CPDO75976 1380 aa25.02■■□□□ 1.6
CLN3-230ENST00000568076 SLC39A6Q13433 755 aa25.02■■□□□ 1.6
CLN3-230ENST00000568076 USP26Q9BXU7 913 aa25.02■■□□□ 1.6
CLN3-230ENST00000568076 STRCQ7RTU9 1775 aa25■■□□□ 1.59
CLN3-230ENST00000568076 EIF5BO60841 1220 aaKnown RBP25■■□□□ 1.59
CLN3-230ENST00000568076 ZNF790Q6PG37 636 aa25■■□□□ 1.59
CLN3-230ENST00000568076 MX1P20591 662 aa25■■□□□ 1.59
CLN3-230ENST00000568076 MAP3K2Q9Y2U5 619 aa25■■□□□ 1.59
CLN3-230ENST00000568076 TUBGCP6Q96RT7 1819 aa24.99■■□□□ 1.59
CLN3-230ENST00000568076 PDIA6Q15084 440 aa24.98■■□□□ 1.59
CLN3-230ENST00000568076 KSR2Q6VAB6 950 aa24.98■■□□□ 1.59
CLN3-230ENST00000568076 IFNL2Q8IZJ0 200 aa24.98■■□□□ 1.59
CLN3-230ENST00000568076 NFATC2IPQ8NCF5 419 aa24.98■■□□□ 1.59
CLN3-230ENST00000568076 CYP27B1O15528 508 aa24.98■■□□□ 1.59
CLN3-230ENST00000568076 CASC1Q6TDU7 716 aa24.98■■□□□ 1.59
CLN3-230ENST00000568076 HYPKQ9NX55 129 aa24.98■■□□□ 1.59
CLN3-230ENST00000568076 DDIT3P35638 169 aa24.97■■□□□ 1.59
CLN3-230ENST00000568076 CHMP5Q9NZZ3 219 aa24.97■■□□□ 1.59
CLN3-230ENST00000568076 STAP2Q9UGK3 403 aa24.97■■□□□ 1.59
CLN3-230ENST00000568076 SRGAP3O43295 1099 aa24.96■■□□□ 1.59
CLN3-230ENST00000568076 DDX21Q9NR30 783 aaKnown RBP eCLIP24.96■■□□□ 1.59
CLN3-230ENST00000568076 C5P01031 1676 aa24.96■■□□□ 1.59
CLN3-230ENST00000568076 PLEKHG2Q9H7P9 1386 aa24.96■■□□□ 1.59
CLN3-230ENST00000568076 PKD1L3Q7Z443 1732 aa24.96■■□□□ 1.59
CLN3-230ENST00000568076 SURF6O75683 361 aaKnown RBP24.95■■□□□ 1.58
CLN3-230ENST00000568076 IL1RAPL2Q9NP60 686 aa24.95■■□□□ 1.58
CLN3-230ENST00000568076 MRC1P22897 1456 aa24.95■■□□□ 1.58
CLN3-230ENST00000568076 RAB11FIP3O75154 756 aa24.94■■□□□ 1.58
CLN3-230ENST00000568076 ALDH1L1O75891 902 aa24.94■■□□□ 1.58
CLN3-230ENST00000568076 GSE1Q14687 1217 aa24.94■■□□□ 1.58
CLN3-230ENST00000568076 KDM4FA0A1W2PPD8 638 aa24.94■■□□□ 1.58
CLN3-230ENST00000568076 CWF19L2Q2TBE0 894 aaKnown RBP24.94■■□□□ 1.58
CLN3-230ENST00000568076 ZNF335Q9H4Z2 1342 aaPredicted RBP24.94■■□□□ 1.58
CLN3-230ENST00000568076 HSP90AB1P08238 724 aaKnown RBP24.93■■□□□ 1.58
CLN3-230ENST00000568076 DCAF5Q96JK2 942 aa24.93■■□□□ 1.58
CLN3-230ENST00000568076 RHPN1Q8TCX5 695 aa24.93■■□□□ 1.58
CLN3-230ENST00000568076 ZNF496Q96IT1 587 aaPredicted RBP24.93■■□□□ 1.58
CLN3-230ENST00000568076 K7ELQ4 463 aaPredicted RBP24.92■■□□□ 1.58
CLN3-230ENST00000568076 ERC2O15083 957 aa24.92■■□□□ 1.58
CLN3-230ENST00000568076 SOS2Q07890 1332 aaPredicted RBP24.92■■□□□ 1.58
CLN3-230ENST00000568076 AIMP1Q12904 312 aaKnown RBP24.91■■□□□ 1.58
CLN3-230ENST00000568076 MTX1Q13505 466 aa24.91■■□□□ 1.58
CLN3-230ENST00000568076 SLAIN2Q9P270 581 aa24.91■■□□□ 1.58
CLN3-230ENST00000568076 REC8O95072 547 aa24.91■■□□□ 1.58
CLN3-230ENST00000568076 AOX1Q06278 1338 aa24.9■■□□□ 1.58
CLN3-230ENST00000568076 RABEP1Q15276 862 aa24.9■■□□□ 1.58
CLN3-230ENST00000568076 NUTM1Q86Y26 1132 aa24.9■■□□□ 1.58
CLN3-230ENST00000568076 C9orf78Q9NZ63 289 aaPredicted RBP24.9■■□□□ 1.58
CLN3-230ENST00000568076 UNC5CLQ8IV45 518 aa24.89■■□□□ 1.58
CLN3-230ENST00000568076 LINS1Q8NG48 757 aa24.89■■□□□ 1.58
CLN3-230ENST00000568076 KIF1BPQ96EK5 621 aa24.89■■□□□ 1.57
CLN3-230ENST00000568076 DDX58O95786 925 aaKnown RBP24.88■■□□□ 1.57
CLN3-230ENST00000568076 PRDM11Q9NQV5 511 aa24.88■■□□□ 1.57
CLN3-230ENST00000568076 RILPL2Q969X0 211 aa24.87■■□□□ 1.57
CLN3-230ENST00000568076 TRIM6-TRIM34B2RNG4 842 aa24.87■■□□□ 1.57
CLN3-230ENST00000568076 MYL6BP14649 208 aa24.87■■□□□ 1.57
CLN3-230ENST00000568076 ESYT1Q9BSJ8 1104 aa24.87■■□□□ 1.57
CLN3-230ENST00000568076 USP16Q9Y5T5 823 aa24.87■■□□□ 1.57
CLN3-230ENST00000568076 UTYO14607 1347 aa24.87■■□□□ 1.57
CLN3-230ENST00000568076 WDR17Q8IZU2 1322 aa24.87■■□□□ 1.57
CLN3-230ENST00000568076 IGKV5-2P06315 115 aa24.86■■□□□ 1.57
CLN3-230ENST00000568076 CHMLP26374 656 aa24.86■■□□□ 1.57
CLN3-230ENST00000568076 LRP10Q7Z4F1 713 aa24.86■■□□□ 1.57
CLN3-230ENST00000568076 PI4K2BQ8TCG2 481 aa24.85■■□□□ 1.57
CLN3-230ENST00000568076 KAZALD1Q96I82 304 aa24.85■■□□□ 1.57
CLN3-230ENST00000568076 GRM8O00222 908 aa24.85■■□□□ 1.57
CLN3-230ENST00000568076 MCM4P33991 863 aa24.85■■□□□ 1.57
CLN3-230ENST00000568076 TTC5Q8N0Z6 440 aa24.85■■□□□ 1.57
CLN3-230ENST00000568076 XAGE3Q8WTP9 111 aa24.85■■□□□ 1.57
CLN3-230ENST00000568076 SUCLG2Q96I99 432 aa24.85■■□□□ 1.57
CLN3-230ENST00000568076 SNRPA1P09661 255 aaKnown RBP24.84■■□□□ 1.57
CLN3-230ENST00000568076 HSP90AB4PQ58FF6 505 aa24.84■■□□□ 1.57
CLN3-230ENST00000568076 RIC3Q7Z5B4 369 aa24.84■■□□□ 1.57
CLN3-230ENST00000568076 FOXD4L1Q9NU39 408 aa24.84■■□□□ 1.57
CLN3-230ENST00000568076 COL5A2P05997 1499 aaPredicted RBP24.84■■□□□ 1.57
CLN3-230ENST00000568076 PARP4Q9UKK3 1724 aaKnown RBP24.84■■□□□ 1.57
CLN3-230ENST00000568076 CABP4P57796 275 aa24.84■■□□□ 1.57
CLN3-230ENST00000568076 COPS6Q7L5N1 327 aa24.84■■□□□ 1.57
CLN3-230ENST00000568076 GLI3P10071 1580 aa24.83■■□□□ 1.57
CLN3-230ENST00000568076 FMNL2Q96PY5 1086 aa24.83■■□□□ 1.57
CLN3-230ENST00000568076 CIZ1Q9ULV3 898 aaPredicted RBP24.83■■□□□ 1.57
CLN3-230ENST00000568076 TOM1L2Q6ZVM7 507 aa24.82■■□□□ 1.56
CLN3-230ENST00000568076 PIP4K2AP48426 406 aaPredicted RBP24.82■■□□□ 1.56
CLN3-230ENST00000568076 LARP1Q6PKG0 1096 aaKnown RBP24.82■■□□□ 1.56
CLN3-230ENST00000568076 PA2G4Q9UQ80 394 aaKnown RBP24.82■■□□□ 1.56
CLN3-230ENST00000568076 ABCA3Q99758 1704 aa24.81■■□□□ 1.56
CLN3-230ENST00000568076 HDAC5Q9UQL6 1122 aa24.81■■□□□ 1.56
CLN3-230ENST00000568076 HSP90AA1P07900 732 aaKnown RBP24.8■■□□□ 1.56
CLN3-230ENST00000568076 BICC1Q9H694 974 aaKnown RBP24.8■■□□□ 1.56
CLN3-230ENST00000568076 NEURL1BA8MQ27 555 aa24.8■■□□□ 1.56
CLN3-230ENST00000568076 MAP4K4O95819 1239 aaPredicted RBP24.8■■□□□ 1.56
CLN3-230ENST00000568076 USP42Q9H9J4 1324 aaKnown RBP24.79■■□□□ 1.56
CLN3-230ENST00000568076 OS9Q13438 667 aaPredicted RBP24.79■■□□□ 1.56
CLN3-230ENST00000568076 ZCRB1Q8TBF4 217 aaKnown RBP24.79■■□□□ 1.56
CLN3-230ENST00000568076 METTL22Q9BUU2 404 aaPredicted RBP24.79■■□□□ 1.56
CLN3-230ENST00000568076 IL25Q9H293 177 aa24.79■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 111.6 ms