RNA–Protein interactions for RNA: ENST00000565379.1

NME3-208, Transcript of NME/NM23 nucleoside diphosphate kinase 3, human

TSL 2

Gene NME3, Length 911 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NME3-208	ENST00000565379	TRAPPC3L	Q5T215	181 aa		33.95	■■■■□ 3.03
NME3-208	ENST00000565379	DNAJC10	Q8IXB1	793 aa		33.95	■■■■□ 3.03
NME3-208	ENST00000565379	MCM10	Q7L590	875 aa		33.94	■■■■□ 3.02
NME3-208	ENST00000565379	TRIM35	Q9UPQ4	493 aa		33.94	■■■■□ 3.02
NME3-208	ENST00000565379	DLG5	Q8TDM6	1919 aa		33.94	■■■■□ 3.02
NME3-208	ENST00000565379	CIC	Q96RK0	1608 aa	Predicted RBP	33.93	■■■■□ 3.02
NME3-208	ENST00000565379	C4A	P0C0L4	1744 aa		33.93	■■■■□ 3.02
NME3-208	ENST00000565379	MMP10	P09238	476 aa		33.92	■■■■□ 3.02
NME3-208	ENST00000565379	C1QTNF8	P60827	252 aa		33.92	■■■■□ 3.02
NME3-208	ENST00000565379	CALD1	Q05682	793 aa	Known RBP	33.92	■■■■□ 3.02
NME3-208	ENST00000565379	INTS5	Q6P9B9	1019 aa	Known RBP	33.91	■■■■□ 3.02
NME3-208	ENST00000565379	WWC3	Q9ULE0	1092 aa		33.91	■■■■□ 3.02
NME3-208	ENST00000565379	DCTN1	Q14203	1278 aa		33.9	■■■■□ 3.02
NME3-208	ENST00000565379	SRP68	Q9UHB9	627 aa	Known RBP	33.9	■■■■□ 3.02
NME3-208	ENST00000565379	GYS1	P13807	737 aa		33.88	■■■■□ 3.01
NME3-208	ENST00000565379	ADRA2B	P18089	450 aa		33.88	■■■■□ 3.01
NME3-208	ENST00000565379	RFC4	P35249	363 aa		33.86	■■■■□ 3.01
NME3-208	ENST00000565379	TAF7	Q15545	349 aa	Predicted RBP	33.86	■■■■□ 3.01
NME3-208	ENST00000565379	BABAM1	Q9NWV8	329 aa		33.86	■■■■□ 3.01
NME3-208	ENST00000565379	UBR2	Q8IWV8	1755 aa		33.85	■■■■□ 3.01
NME3-208	ENST00000565379	WWC1	Q8IX03	1113 aa		33.85	■■■■□ 3.01
NME3-208	ENST00000565379	CYP19A1	P11511	503 aa	Predicted RBP	33.84	■■■■□ 3.01
NME3-208	ENST00000565379	SIPA1L3	O60292	1781 aa	Predicted RBP	33.84	■■■■□ 3.01
NME3-208	ENST00000565379	CCDC87	Q9NVE4	849 aa		33.83	■■■■□ 3.01
NME3-208	ENST00000565379	GIGYF1	O75420	1035 aa	Predicted RBP	33.82	■■■■□ 3
NME3-208	ENST00000565379	THUMPD2	Q9BTF0	503 aa	Known RBP	33.82	■■■■□ 3
NME3-208	ENST00000565379	BTBD11	A6QL63	1104 aa		33.81	■■■■□ 3
NME3-208	ENST00000565379	WDR63	Q8IWG1	891 aa		33.81	■■■■□ 3
NME3-208	ENST00000565379	FKBP8	Q14318	412 aa		33.8	■■■■□ 3
NME3-208	ENST00000565379	NLGN1	Q8N2Q7	840 aa		33.8	■■■■□ 3
NME3-208	ENST00000565379	ZBTB1	Q9Y2K1	713 aa		33.8	■■■■□ 3
NME3-208	ENST00000565379	SOS1	Q07889	1333 aa	Predicted RBP	33.79	■■■■□ 3
NME3-208	ENST00000565379	USP42	Q9H9J4	1324 aa	Known RBP	33.79	■■■■□ 3
NME3-208	ENST00000565379	SENP3-EIF4A1	A0A087X0R7	540 aa		33.79	■■■■□ 3
NME3-208	ENST00000565379	KCNQ3	O43525	872 aa		33.79	■■■■□ 3
NME3-208	ENST00000565379	IL16	Q14005	1332 aa		33.79	■■■■□ 3
NME3-208	ENST00000565379	ZNF496	Q96IT1	587 aa	Predicted RBP	33.78	■■■■□ 3
NME3-208	ENST00000565379	SALL2	Q9Y467	1007 aa	Predicted RBP	33.78	■■■■□ 3
NME3-208	ENST00000565379	KIAA1551	Q9HCM1	1747 aa		33.77	■■■■□ 3
NME3-208	ENST00000565379	TTC5	Q8N0Z6	440 aa		33.77	■■■■□ 3
NME3-208	ENST00000565379	CFAP44	Q96MT7	982 aa		33.76	■■■□□ 2.99
NME3-208	ENST00000565379	IFT57	Q9NWB7	429 aa		33.76	■■■□□ 2.99
NME3-208	ENST00000565379	C10orf71	Q711Q0	1435 aa		33.76	■■■□□ 2.99
NME3-208	ENST00000565379	PXDNL	A1KZ92	1463 aa		33.76	■■■□□ 2.99
NME3-208	ENST00000565379	GNAI1	P63096	354 aa		33.75	■■■□□ 2.99
NME3-208	ENST00000565379	DDR1	Q08345	913 aa		33.75	■■■□□ 2.99
NME3-208	ENST00000565379	ZNF790	Q6PG37	636 aa		33.75	■■■□□ 2.99
NME3-208	ENST00000565379	HNRNPU	Q00839	825 aa	Known RBP eCLIP	33.74	■■■□□ 2.99
NME3-208	ENST00000565379	ZNF521	Q96K83	1311 aa		33.74	■■■□□ 2.99
NME3-208	ENST00000565379	KIF13B	Q9NQT8	1826 aa		33.74	■■■□□ 2.99
NME3-208	ENST00000565379	CHL1	O00533	1208 aa		33.73	■■■□□ 2.99
NME3-208	ENST00000565379	VSIG10	Q8N0Z9	540 aa		33.73	■■■□□ 2.99
NME3-208	ENST00000565379	USPL1	Q5W0Q7	1092 aa		33.72	■■■□□ 2.99
NME3-208	ENST00000565379	TSPYL4	Q9UJ04	414 aa		33.72	■■■□□ 2.99
NME3-208	ENST00000565379	N4BP2	Q86UW6	1770 aa	Predicted RBP	33.72	■■■□□ 2.99
NME3-208	ENST00000565379	COL15A1	P39059	1388 aa		33.72	■■■□□ 2.99
NME3-208	ENST00000565379	HEG1	Q9ULI3	1381 aa		33.72	■■■□□ 2.99
NME3-208	ENST00000565379	ZNF853	P0CG23	659 aa		33.71	■■■□□ 2.99
NME3-208	ENST00000565379	CANX	P27824	592 aa	Known RBP	33.7	■■■□□ 2.99
NME3-208	ENST00000565379	PARP3	Q9Y6F1	533 aa		33.7	■■■□□ 2.99
NME3-208	ENST00000565379		A0A0G2JLW4	131 aa		33.69	■■■□□ 2.98
NME3-208	ENST00000565379	LAS1L	Q9Y4W2	734 aa	Known RBP	33.69	■■■□□ 2.98
NME3-208	ENST00000565379	FMNL2	Q96PY5	1086 aa		33.67	■■■□□ 2.98
NME3-208	ENST00000565379	BCL2L12	Q9HB09	334 aa		33.67	■■■□□ 2.98
NME3-208	ENST00000565379	ATP10D	Q9P241	1426 aa		33.67	■■■□□ 2.98
NME3-208	ENST00000565379	GOLGA2	Q08379	1002 aa		33.66	■■■□□ 2.98
NME3-208	ENST00000565379	MIS18A	Q9NYP9	233 aa		33.66	■■■□□ 2.98
NME3-208	ENST00000565379	ZPR1	O75312	459 aa		33.65	■■■□□ 2.98
NME3-208	ENST00000565379	DPEP1	P16444	411 aa		33.65	■■■□□ 2.98
NME3-208	ENST00000565379	PRAMEF22	A3QJZ6	481 aa		33.64	■■■□□ 2.98
NME3-208	ENST00000565379	POLRMT	O00411	1230 aa	Known RBP	33.64	■■■□□ 2.98
NME3-208	ENST00000565379	TM4SF1	P30408	202 aa		33.64	■■■□□ 2.98
NME3-208	ENST00000565379	MYH16	Q9H6N6	1097 aa		33.64	■■■□□ 2.98
NME3-208	ENST00000565379	NARF	Q9UHQ1	456 aa		33.64	■■■□□ 2.98
NME3-208	ENST00000565379	ZBED9	Q6R2W3	1325 aa		33.63	■■■□□ 2.97
NME3-208	ENST00000565379	STARD3NL	O95772	234 aa		33.63	■■■□□ 2.97
NME3-208	ENST00000565379	KDM3B	Q7LBC6	1761 aa		33.62	■■■□□ 2.97
NME3-208	ENST00000565379	EIF5	P55010	431 aa	Known RBP	33.62	■■■□□ 2.97
NME3-208	ENST00000565379	GPBP1L1	Q9HC44	474 aa	Predicted RBP	33.62	■■■□□ 2.97
NME3-208	ENST00000565379	MBIP	Q9NS73	344 aa		33.62	■■■□□ 2.97
NME3-208	ENST00000565379	A1BG	P04217	495 aa		33.61	■■■□□ 2.97
NME3-208	ENST00000565379	EIF4A1	P60842	406 aa	Known RBP	33.61	■■■□□ 2.97
NME3-208	ENST00000565379	TGFB2	P61812	414 aa		33.61	■■■□□ 2.97
NME3-208	ENST00000565379	NFIX	Q14938	502 aa		33.61	■■■□□ 2.97
NME3-208	ENST00000565379	TEX13A	Q9BXU3	409 aa	Predicted RBP	33.61	■■■□□ 2.97
NME3-208	ENST00000565379		E9PSI1	815 aa		33.6	■■■□□ 2.97
NME3-208	ENST00000565379	PIP4K2A	P48426	406 aa	Predicted RBP	33.6	■■■□□ 2.97
NME3-208	ENST00000565379	ADCY9	O60503	1353 aa		33.6	■■■□□ 2.97
NME3-208	ENST00000565379	ZNF330	Q9Y3S2	320 aa	Predicted RBP	33.59	■■■□□ 2.97
NME3-208	ENST00000565379	KCNA3	P22001	575 aa		33.58	■■■□□ 2.97
NME3-208	ENST00000565379	SNRPA1	P09661	255 aa	Known RBP	33.57	■■■□□ 2.96
NME3-208	ENST00000565379	BCS1L	Q9Y276	419 aa		33.57	■■■□□ 2.96
NME3-208	ENST00000565379	USP16	Q9Y5T5	823 aa		33.57	■■■□□ 2.96
NME3-208	ENST00000565379	AFDN	P55196	1824 aa	Known RBP	33.56	■■■□□ 2.96
NME3-208	ENST00000565379	BRCA1	P38398	1863 aa	Known RBP	33.56	■■■□□ 2.96
NME3-208	ENST00000565379	CHRNA5	P30532	468 aa		33.55	■■■□□ 2.96
NME3-208	ENST00000565379	TBC1D2B	Q9UPU7	963 aa		33.55	■■■□□ 2.96
NME3-208	ENST00000565379	FANCI	Q9NVI1	1328 aa		33.53	■■■□□ 2.96
NME3-208	ENST00000565379	HOXB7	P09629	217 aa		33.53	■■■□□ 2.96
NME3-208	ENST00000565379	SLFN5	Q08AF3	891 aa		33.53	■■■□□ 2.96

Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms