RNA–Protein interactions for RNA: ENST00000561940.1

SMG1-204, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 964 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-204ENST00000561940 TSPAN10Q9H1Z9 355 aaPredicted RBP11.7□□□□□ -0.54
SMG1-204ENST00000561940 F11P03951 625 aa11.69□□□□□ -0.54
SMG1-204ENST00000561940 MSX1P28360 303 aa11.69□□□□□ -0.54
SMG1-204ENST00000561940 SV2AQ7L0J3 742 aa11.69□□□□□ -0.54
SMG1-204ENST00000561940 SRPK2P78362 688 aaKnown RBP11.68□□□□□ -0.54
SMG1-204ENST00000561940 FOXK2Q01167 660 aa11.68□□□□□ -0.54
SMG1-204ENST00000561940 RUBCNLQ9H714 662 aa11.68□□□□□ -0.54
SMG1-204ENST00000561940 A0A1B0GTH6 734 aa11.67□□□□□ -0.54
SMG1-204ENST00000561940 ZNF295-AS1Q8N0V1 137 aa11.67□□□□□ -0.54
SMG1-204ENST00000561940 ZDHHC1Q8WTX9 485 aa11.67□□□□□ -0.54
SMG1-204ENST00000561940 NOVA2Q9UNW9 492 aaKnown RBP11.67□□□□□ -0.54
SMG1-204ENST00000561940 FAM200AQ8TCP9 573 aa11.66□□□□□ -0.54
SMG1-204ENST00000561940 CHMP7Q8WUX9 453 aaPredicted RBP11.66□□□□□ -0.54
SMG1-204ENST00000561940 ZNF232Q9UNY5 417 aa11.66□□□□□ -0.54
SMG1-204ENST00000561940 GPR25O00155 361 aa11.65□□□□□ -0.54
SMG1-204ENST00000561940 SH3PXD2AQ5TCZ1 1133 aa11.65□□□□□ -0.54
SMG1-204ENST00000561940 TRIM22Q8IYM9 498 aa11.65□□□□□ -0.54
SMG1-204ENST00000561940 NANOS1Q8WY41 292 aaKnown RBP11.65□□□□□ -0.54
SMG1-204ENST00000561940 L3MBTL2Q969R5 705 aa11.65□□□□□ -0.54
SMG1-204ENST00000561940 M0R2N6 131 aa11.64□□□□□ -0.55
SMG1-204ENST00000561940 VSIG8P0DPA2 414 aa11.64□□□□□ -0.55
SMG1-204ENST00000561940 NOS2P35228 1153 aa11.64□□□□□ -0.55
SMG1-204ENST00000561940 SCG3Q8WXD2 468 aaKnown RBP11.64□□□□□ -0.55
SMG1-204ENST00000561940 GTPBP3Q969Y2 492 aaKnown RBP11.64□□□□□ -0.55
SMG1-204ENST00000561940 ZNF837Q96EG3 531 aaPredicted RBP11.64□□□□□ -0.55
SMG1-204ENST00000561940 H7C1W4 665 aa11.63□□□□□ -0.55
SMG1-204ENST00000561940 PPP1R12BO60237 982 aaPredicted RBP11.63□□□□□ -0.55
SMG1-204ENST00000561940 CSB-PGBD3P0DP91 1061 aa11.63□□□□□ -0.55
SMG1-204ENST00000561940 TXLNAP40222 546 aa11.63□□□□□ -0.55
SMG1-204ENST00000561940 PGBD3Q8N328 593 aa11.63□□□□□ -0.55
SMG1-204ENST00000561940 RETREG2Q8NC44 543 aa11.63□□□□□ -0.55
SMG1-204ENST00000561940 PBXIP1Q96AQ6 731 aa11.63□□□□□ -0.55
SMG1-204ENST00000561940 NUCKS1Q9H1E3 243 aaKnown RBP11.63□□□□□ -0.55
SMG1-204ENST00000561940 HCN4Q9Y3Q4 1203 aa11.63□□□□□ -0.55
SMG1-204ENST00000561940 ATAD2Q6PL18 1390 aa11.63□□□□□ -0.55
SMG1-204ENST00000561940 TRIM26Q12899 539 aaPredicted RBP11.62□□□□□ -0.55
SMG1-204ENST00000561940 TEAD4Q15561 434 aa11.62□□□□□ -0.55
SMG1-204ENST00000561940 ARSJQ5FYB0 599 aaPredicted RBP11.62□□□□□ -0.55
SMG1-204ENST00000561940 STK32AQ8WU08 396 aa11.62□□□□□ -0.55
SMG1-204ENST00000561940 COL25A1Q9BXS0 654 aaPredicted RBP11.62□□□□□ -0.55
SMG1-204ENST00000561940 ZMIZ1Q9ULJ6 1067 aa11.62□□□□□ -0.55
SMG1-204ENST00000561940 SERTM1A2A2V5 107 aa11.61□□□□□ -0.55
SMG1-204ENST00000561940 C21orf2O43822 256 aa11.61□□□□□ -0.55
SMG1-204ENST00000561940 THBS1P07996 1170 aa11.61□□□□□ -0.55
SMG1-204ENST00000561940 PDIA4P13667 645 aaKnown RBP11.61□□□□□ -0.55
SMG1-204ENST00000561940 ATP4AP20648 1035 aa11.61□□□□□ -0.55
SMG1-204ENST00000561940 NBPF1Q3BBV0 1214 aa11.61□□□□□ -0.55
SMG1-204ENST00000561940 CNTNAP3BQ96NU0 1288 aa11.61□□□□□ -0.55
SMG1-204ENST00000561940 CNTNAP3Q9BZ76 1288 aa11.61□□□□□ -0.55
SMG1-204ENST00000561940 RNFT1Q5M7Z0 435 aa11.6□□□□□ -0.55
SMG1-204ENST00000561940 PSMA6P60900 246 aaKnown RBP11.59□□□□□ -0.55
SMG1-204ENST00000561940 KRT76Q01546 638 aa11.59□□□□□ -0.55
SMG1-204ENST00000561940 BICDL1Q6ZP65 573 aa11.59□□□□□ -0.55
SMG1-204ENST00000561940 EML1O00423 815 aa11.58□□□□□ -0.56
SMG1-204ENST00000561940 ATG7O95352 703 aa11.58□□□□□ -0.56
SMG1-204ENST00000561940 TATP17735 454 aaPredicted RBP11.58□□□□□ -0.56
SMG1-204ENST00000561940 CHMP3Q9Y3E7 222 aa11.58□□□□□ -0.56
SMG1-204ENST00000561940 A0A1W2PNR3 127 aa11.57□□□□□ -0.56
SMG1-204ENST00000561940 EFHC2Q5JST6 749 aa11.57□□□□□ -0.56
SMG1-204ENST00000561940 FOXR1Q6PIV2 292 aa11.57□□□□□ -0.56
SMG1-204ENST00000561940 GMCL1Q96IK5 515 aa11.57□□□□□ -0.56
SMG1-204ENST00000561940 NGLY1Q96IV0 654 aa11.57□□□□□ -0.56
SMG1-204ENST00000561940 PRIMPOLQ96LW4 560 aa11.57□□□□□ -0.56
SMG1-204ENST00000561940 WIPF1O43516 503 aa11.56□□□□□ -0.56
SMG1-204ENST00000561940 PPP1R15AO75807 674 aaPredicted RBP11.56□□□□□ -0.56
SMG1-204ENST00000561940 TMEM164Q5U3C3 297 aa11.56□□□□□ -0.56
SMG1-204ENST00000561940 KLRG1Q96E93 195 aa11.56□□□□□ -0.56
SMG1-204ENST00000561940 ZIC5Q96T25 663 aa11.56□□□□□ -0.56
SMG1-204ENST00000561940 ZDHHC3Q9NYG2 299 aa11.56□□□□□ -0.56
SMG1-204ENST00000561940 ELOAQ14241 798 aaKnown RBP11.55□□□□□ -0.56
SMG1-204ENST00000561940 GAS6Q14393 721 aa11.55□□□□□ -0.56
SMG1-204ENST00000561940 C1orf216Q8TAB5 229 aa11.55□□□□□ -0.56
SMG1-204ENST00000561940 CRISPLD1Q9H336 500 aa11.55□□□□□ -0.56
SMG1-204ENST00000561940 PRMT3O60678 531 aa11.54□□□□□ -0.56
SMG1-204ENST00000561940 TRERF1Q96PN7 1200 aa11.54□□□□□ -0.56
SMG1-204ENST00000561940 C2orf49Q9BVC5 232 aaPredicted RBP11.54□□□□□ -0.56
SMG1-204ENST00000561940 PHACTR1Q9C0D0 580 aa11.54□□□□□ -0.56
SMG1-204ENST00000561940 GJA3Q9Y6H8 435 aa11.54□□□□□ -0.56
SMG1-204ENST00000561940 UBAP2LQ14157 1087 aaKnown RBP11.53□□□□□ -0.56
SMG1-204ENST00000561940 ZCCHC2Q9C0B9 1178 aaKnown RBP11.53□□□□□ -0.56
SMG1-204ENST00000561940 ACIN1Q9UKV3 1341 aaKnown RBP11.53□□□□□ -0.56
SMG1-204ENST00000561940 IGFBP4P22692 258 aa11.52□□□□□ -0.57
SMG1-204ENST00000561940 FAM69CQ0P6D2 419 aa11.52□□□□□ -0.57
SMG1-204ENST00000561940 LRRC69Q6ZNQ3 347 aa11.52□□□□□ -0.57
SMG1-204ENST00000561940 RHPN1Q8TCX5 695 aa11.52□□□□□ -0.57
SMG1-204ENST00000561940 NEUROD4Q9HD90 331 aa11.52□□□□□ -0.57
SMG1-204ENST00000561940 WEE1P30291 646 aa11.51□□□□□ -0.57
SMG1-204ENST00000561940 ALDH16A1Q8IZ83 802 aa11.51□□□□□ -0.57
SMG1-204ENST00000561940 ABHD17AQ96GS6 310 aa11.51□□□□□ -0.57
SMG1-204ENST00000561940 TRAIPQ9BWF2 469 aa11.51□□□□□ -0.57
SMG1-204ENST00000561940 CARNS1A5YM72 827 aa11.5□□□□□ -0.57
SMG1-204ENST00000561940 BNIP3LO60238 219 aa11.5□□□□□ -0.57
SMG1-204ENST00000561940 C7orf43Q8WVR3 580 aa11.5□□□□□ -0.57
SMG1-204ENST00000561940 PODXL2Q9NZ53 605 aa11.5□□□□□ -0.57
SMG1-204ENST00000561940 LBRQ14739 615 aaKnown RBP11.49□□□□□ -0.57
SMG1-204ENST00000561940 SWI5Q1ZZU3 235 aa11.49□□□□□ -0.57
SMG1-204ENST00000561940 NLRP8Q86W28 1048 aa11.49□□□□□ -0.57
SMG1-204ENST00000561940 DCDC2BA2VCK2 349 aa11.48□□□□□ -0.57
SMG1-204ENST00000561940 ATXN7O15265 892 aaPredicted RBP11.48□□□□□ -0.57
SMG1-204ENST00000561940 STAG2Q8N3U4 1231 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms