RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 CHADLQ6NUI6 762 aa17.15■□□□□ 0.34
SHMT2-230ENST00000557427 ADAMTS7Q9UKP4 1686 aa17.15■□□□□ 0.34
SHMT2-230ENST00000557427 VEGFBP49765 207 aa17.14■□□□□ 0.33
SHMT2-230ENST00000557427 WBP1LQ9NX94 342 aa17.14■□□□□ 0.33
SHMT2-230ENST00000557427 ERVV-2B6SEH9 535 aa17.13■□□□□ 0.33
SHMT2-230ENST00000557427 INTS5Q6P9B9 1019 aaKnown RBP17.12■□□□□ 0.33
SHMT2-230ENST00000557427 WASHC2AQ641Q2 1341 aa17.12■□□□□ 0.33
SHMT2-230ENST00000557427 PASKQ96RG2 1323 aa17.12■□□□□ 0.33
SHMT2-230ENST00000557427 DLEC1Q9Y238 1755 aa17.11■□□□□ 0.33
SHMT2-230ENST00000557427 PPM1GO15355 546 aaPredicted RBP17.11■□□□□ 0.33
SHMT2-230ENST00000557427 PTCD1O75127 700 aaKnown RBP17.11■□□□□ 0.33
SHMT2-230ENST00000557427 HSPA5P11021 654 aaKnown RBP17.11■□□□□ 0.33
SHMT2-230ENST00000557427 EIF4G2P78344 907 aaKnown RBP eCLIP17.11■□□□□ 0.33
SHMT2-230ENST00000557427 USPL1Q5W0Q7 1092 aa17.11■□□□□ 0.33
SHMT2-230ENST00000557427 DPY19L2Q6NUT2 758 aa17.11■□□□□ 0.33
SHMT2-230ENST00000557427 TTLL6Q8N841 843 aa17.11■□□□□ 0.33
SHMT2-230ENST00000557427 AFDNP55196 1824 aaKnown RBP17.11■□□□□ 0.33
SHMT2-230ENST00000557427 KIF20BQ96Q89 1820 aa17.11■□□□□ 0.33
SHMT2-230ENST00000557427 VIRMAQ69YN4 1812 aaKnown RBP17.1■□□□□ 0.33
SHMT2-230ENST00000557427 HSPA8P11142 646 aaKnown RBP17.1■□□□□ 0.33
SHMT2-230ENST00000557427 RGS19P49795 217 aa17.1■□□□□ 0.33
SHMT2-230ENST00000557427 AIDAQ96BJ3 306 aa17.1■□□□□ 0.33
SHMT2-230ENST00000557427 MLLT1Q03111 559 aaPredicted RBP17.09■□□□□ 0.33
SHMT2-230ENST00000557427 NFIXQ14938 502 aa17.09■□□□□ 0.33
SHMT2-230ENST00000557427 CARD14Q9BXL6 1004 aa17.09■□□□□ 0.33
SHMT2-230ENST00000557427 TJP1Q07157 1748 aa17.09■□□□□ 0.33
SHMT2-230ENST00000557427 NRXN2Q9P2S2 1712 aa17.09■□□□□ 0.33
SHMT2-230ENST00000557427 ANKRD26Q9UPS8 1709 aa17.08■□□□□ 0.32
SHMT2-230ENST00000557427 DDNO94850 711 aaPredicted RBP17.08■□□□□ 0.32
SHMT2-230ENST00000557427 CARMIL3Q8ND23 1372 aa17.07■□□□□ 0.32
SHMT2-230ENST00000557427 CABP4P57796 275 aa17.07■□□□□ 0.32
SHMT2-230ENST00000557427 ERFEQ4G0M1 354 aa17.07■□□□□ 0.32
SHMT2-230ENST00000557427 C2CD5Q86YS7 1000 aa17.07■□□□□ 0.32
SHMT2-230ENST00000557427 ITGBL1O95965 494 aaPredicted RBP17.06■□□□□ 0.32
SHMT2-230ENST00000557427 BCL2L12Q9HB09 334 aa17.06■□□□□ 0.32
SHMT2-230ENST00000557427 DICER1Q9UPY3 1922 aaKnown RBP17.06■□□□□ 0.32
SHMT2-230ENST00000557427 TMEM88BA6NKF7 163 aa17.05■□□□□ 0.32
SHMT2-230ENST00000557427 ZPR1O75312 459 aa17.05■□□□□ 0.32
SHMT2-230ENST00000557427 SERPINB2P05120 415 aa17.05■□□□□ 0.32
SHMT2-230ENST00000557427 CCDC85CA6NKD9 419 aa17.04■□□□□ 0.32
SHMT2-230ENST00000557427 EIF4A2Q14240 407 aaKnown RBP17.04■□□□□ 0.32
SHMT2-230ENST00000557427 NFATC2IPQ8NCF5 419 aa17.04■□□□□ 0.32
SHMT2-230ENST00000557427 POLKQ9UBT6 870 aa17.04■□□□□ 0.32
SHMT2-230ENST00000557427 FER1L6Q2WGJ9 1857 aa17.03■□□□□ 0.32
SHMT2-230ENST00000557427 SOS1Q07889 1333 aaPredicted RBP17.03■□□□□ 0.32
SHMT2-230ENST00000557427 C21orf2O43822 256 aa17.03■□□□□ 0.32
SHMT2-230ENST00000557427 HSP90AB1P08238 724 aaKnown RBP17.03■□□□□ 0.32
SHMT2-230ENST00000557427 ZNF219Q9P2Y4 722 aaPredicted RBP17.03■□□□□ 0.32
SHMT2-230ENST00000557427 H0YIN7 160 aa17.02■□□□□ 0.32
SHMT2-230ENST00000557427 LDHDQ86WU2 507 aa17.02■□□□□ 0.32
SHMT2-230ENST00000557427 DNAJC10Q8IXB1 793 aa17.02■□□□□ 0.32
SHMT2-230ENST00000557427 MIER1Q8N108 512 aa17.02■□□□□ 0.32
SHMT2-230ENST00000557427 NARFQ9UHQ1 456 aa17.02■□□□□ 0.32
SHMT2-230ENST00000557427 RASSF10A6NK89 507 aa17.01■□□□□ 0.31
SHMT2-230ENST00000557427 TAF1DQ9H5J8 278 aaPredicted RBP17.01■□□□□ 0.31
SHMT2-230ENST00000557427 ZNF530Q6P9A1 599 aaPredicted RBP17■□□□□ 0.31
SHMT2-230ENST00000557427 LTBP3Q9NS15 1303 aa16.99■□□□□ 0.31
SHMT2-230ENST00000557427 CYP19A1P11511 503 aaPredicted RBP16.99■□□□□ 0.31
SHMT2-230ENST00000557427 MTHFSP49914 203 aa16.99■□□□□ 0.31
SHMT2-230ENST00000557427 DEFB115Q30KQ5 88 aa16.99■□□□□ 0.31
SHMT2-230ENST00000557427 PLEKHO1Q53GL0 409 aaPredicted RBP16.99■□□□□ 0.31
SHMT2-230ENST00000557427 ANKRD31Q8N7Z5 1873 aa16.99■□□□□ 0.31
SHMT2-230ENST00000557427 WDR33Q9C0J8 1336 aaKnown RBP16.98■□□□□ 0.31
SHMT2-230ENST00000557427 ZNF622Q969S3 477 aaKnown RBP eCLIP16.98■□□□□ 0.31
SHMT2-230ENST00000557427 L3MBTL3Q96JM7 780 aaPredicted RBP16.98■□□□□ 0.31
SHMT2-230ENST00000557427 PANK3Q9H999 370 aa16.98■□□□□ 0.31
SHMT2-230ENST00000557427 TNRC18O15417 2968 aaPredicted RBP16.97■□□□□ 0.31
SHMT2-230ENST00000557427 MAP2K1Q02750 393 aaPredicted RBP16.97■□□□□ 0.31
SHMT2-230ENST00000557427 TAOK3Q9H2K8 898 aa16.97■□□□□ 0.31
SHMT2-230ENST00000557427 COL15A1P39059 1388 aa16.97■□□□□ 0.31
SHMT2-230ENST00000557427 ADAMTSL1Q8N6G6 1762 aa16.97■□□□□ 0.31
SHMT2-230ENST00000557427 COL11A2P13942 1736 aaPredicted RBP16.96■□□□□ 0.31
SHMT2-230ENST00000557427 SCN4AP35499 1836 aa16.96■□□□□ 0.31
SHMT2-230ENST00000557427 IQCA1LA6NCM1 817 aa16.96■□□□□ 0.31
SHMT2-230ENST00000557427 CCDC24Q8N4L8 307 aa16.96■□□□□ 0.31
SHMT2-230ENST00000557427 ZBTB1Q9Y2K1 713 aa16.96■□□□□ 0.31
SHMT2-230ENST00000557427 EAPPQ56P03 285 aaPredicted RBP16.95■□□□□ 0.3
SHMT2-230ENST00000557427 BICDL1Q6ZP65 573 aa16.95■□□□□ 0.3
SHMT2-230ENST00000557427 SLX4Q8IY92 1834 aa16.94■□□□□ 0.3
SHMT2-230ENST00000557427 TNNT2P45379 298 aaPredicted RBP16.94■□□□□ 0.3
SHMT2-230ENST00000557427 AMOTQ4VCS5 1084 aa16.94■□□□□ 0.3
SHMT2-230ENST00000557427 MAP1SQ66K74 1059 aaPredicted RBP16.93■□□□□ 0.3
SHMT2-230ENST00000557427 AEBP1Q8IUX7 1158 aa16.93■□□□□ 0.3
SHMT2-230ENST00000557427 CNTROBQ8N137 903 aa16.93■□□□□ 0.3
SHMT2-230ENST00000557427 BRIP1Q9BX63 1249 aa16.93■□□□□ 0.3
SHMT2-230ENST00000557427 TBC1D9BQ66K14 1250 aa16.92■□□□□ 0.3
SHMT2-230ENST00000557427 PRR5LQ6MZQ0 368 aa16.92■□□□□ 0.3
SHMT2-230ENST00000557427 CLEC11AQ9Y240 323 aa16.92■□□□□ 0.3
SHMT2-230ENST00000557427 ZNF541Q9H0D2 1346 aa16.92■□□□□ 0.3
SHMT2-230ENST00000557427 PDE6BP35913 854 aa16.91■□□□□ 0.3
SHMT2-230ENST00000557427 FMR1Q06787 632 aaKnown RBP eCLIP16.91■□□□□ 0.3
SHMT2-230ENST00000557427 SLC39A6Q13433 755 aa16.91■□□□□ 0.3
SHMT2-230ENST00000557427 C1orf141Q5JVX7 400 aa16.91■□□□□ 0.3
SHMT2-230ENST00000557427 TSKSQ9UJT2 592 aa16.91■□□□□ 0.3
SHMT2-230ENST00000557427 THSD7BQ9C0I4 1608 aa16.91■□□□□ 0.3
SHMT2-230ENST00000557427 EPHX2P34913 555 aa16.9■□□□□ 0.3
SHMT2-230ENST00000557427 PRPF40BQ6NWY9 871 aaKnown RBP16.9■□□□□ 0.3
SHMT2-230ENST00000557427 C7orf43Q8WVR3 580 aa16.9■□□□□ 0.3
SHMT2-230ENST00000557427 HACL1Q9UJ83 578 aa16.9■□□□□ 0.3
SHMT2-230ENST00000557427 ABT1Q9ULW3 272 aaKnown RBP16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 181.5 ms