RNA–Protein interactions for RNA: ENST00000555221.3

CKS1BP1-201, Transcript of CDC28 protein kinase regulatory subunit 1B pseudogene 1, humanhuman

BASIC

Gene CKS1BP1, Length 240 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP1-201ENST00000555221 C16orf46Q6P387 395 aa9.38□□□□□ -0.91
CKS1BP1-201ENST00000555221 POTEAQ6S8J7 498 aa9.38□□□□□ -0.91
CKS1BP1-201ENST00000555221 LINC00528Q8N1L1 170 aa9.38□□□□□ -0.91
CKS1BP1-201ENST00000555221 RGS22Q8NE09 1264 aa9.38□□□□□ -0.91
CKS1BP1-201ENST00000555221 NIFKQ9BYG3 293 aaKnown RBP9.38□□□□□ -0.91
CKS1BP1-201ENST00000555221 CABP1Q9NZU7 370 aa9.38□□□□□ -0.91
CKS1BP1-201ENST00000555221 USP3Q9Y6I4 520 aa9.38□□□□□ -0.91
CKS1BP1-201ENST00000555221 DNMT3AQ9Y6K1 912 aaPredicted RBP9.38□□□□□ -0.91
CKS1BP1-201ENST00000555221 RHBDD1Q8TEB9 315 aa9.37□□□□□ -0.91
CKS1BP1-201ENST00000555221 ZNF232Q9UNY5 417 aa9.37□□□□□ -0.91
CKS1BP1-201ENST00000555221 EML1O00423 815 aa9.36□□□□□ -0.91
CKS1BP1-201ENST00000555221 NOS2P35228 1153 aa9.36□□□□□ -0.91
CKS1BP1-201ENST00000555221 INSM2Q96T92 566 aaPredicted RBP9.36□□□□□ -0.91
CKS1BP1-201ENST00000555221 GRIP2Q9C0E4 1043 aa9.36□□□□□ -0.91
CKS1BP1-201ENST00000555221 POLMQ9NP87 494 aaPredicted RBP9.36□□□□□ -0.91
CKS1BP1-201ENST00000555221 ANO2Q9NQ90 1003 aa9.36□□□□□ -0.91
CKS1BP1-201ENST00000555221 FAM187AA6NFU0 413 aa9.35□□□□□ -0.91
CKS1BP1-201ENST00000555221 BMP2P12643 396 aa9.35□□□□□ -0.91
CKS1BP1-201ENST00000555221 ZNF295-AS1Q8N0V1 137 aa9.35□□□□□ -0.91
CKS1BP1-201ENST00000555221 L3MBTL2Q969R5 705 aa9.35□□□□□ -0.91
CKS1BP1-201ENST00000555221 FAM13AO94988 1023 aa9.34□□□□□ -0.91
CKS1BP1-201ENST00000555221 AVPP01185 164 aa9.34□□□□□ -0.91
CKS1BP1-201ENST00000555221 ERCC3P19447 782 aa9.34□□□□□ -0.91
CKS1BP1-201ENST00000555221 MARSP56192 900 aaKnown RBP9.34□□□□□ -0.91
CKS1BP1-201ENST00000555221 ZDHHC1Q8WTX9 485 aa9.34□□□□□ -0.91
CKS1BP1-201ENST00000555221 MYO19Q96H55 970 aa9.34□□□□□ -0.91
CKS1BP1-201ENST00000555221 NPR3P17342 541 aa9.33□□□□□ -0.92
CKS1BP1-201ENST00000555221 MTMR3Q13615 1198 aa9.33□□□□□ -0.92
CKS1BP1-201ENST00000555221 SCARF1Q14162 830 aa9.33□□□□□ -0.92
CKS1BP1-201ENST00000555221 CTC1Q2NKJ3 1217 aa9.33□□□□□ -0.92
CKS1BP1-201ENST00000555221 MRPL14Q6P1L8 145 aaKnown RBP9.33□□□□□ -0.92
CKS1BP1-201ENST00000555221 SAP130Q9H0E3 1048 aa9.33□□□□□ -0.92
CKS1BP1-201ENST00000555221 QTRT2Q9H974 415 aaKnown RBP9.33□□□□□ -0.92
CKS1BP1-201ENST00000555221 SPATA31C2B4DYI2 1134 aa9.32□□□□□ -0.92
CKS1BP1-201ENST00000555221 RTN1Q16799 776 aa9.32□□□□□ -0.92
CKS1BP1-201ENST00000555221 COX20Q5RI15 118 aa9.32□□□□□ -0.92
CKS1BP1-201ENST00000555221 DGAT1O75907 488 aa9.31□□□□□ -0.92
CKS1BP1-201ENST00000555221 CTSOP43234 321 aaPredicted RBP9.31□□□□□ -0.92
CKS1BP1-201ENST00000555221 NBPF1Q3BBV0 1214 aa9.31□□□□□ -0.92
CKS1BP1-201ENST00000555221 C6orf118Q5T5N4 469 aa9.31□□□□□ -0.92
CKS1BP1-201ENST00000555221 C1orf53Q5VUE5 145 aa9.31□□□□□ -0.92
CKS1BP1-201ENST00000555221 FOXD4L5Q5VV16 416 aaPredicted RBP9.31□□□□□ -0.92
CKS1BP1-201ENST00000555221 ALDH16A1Q8IZ83 802 aa9.31□□□□□ -0.92
CKS1BP1-201ENST00000555221 NGLY1Q96IV0 654 aa9.31□□□□□ -0.92
CKS1BP1-201ENST00000555221 STIM2Q9P246 746 aa9.31□□□□□ -0.92
CKS1BP1-201ENST00000555221 HCN4Q9Y3Q4 1203 aa9.31□□□□□ -0.92
CKS1BP1-201ENST00000555221 PARP3Q9Y6F1 533 aa9.31□□□□□ -0.92
CKS1BP1-201ENST00000555221 PLA2G4AP47712 749 aa9.3□□□□□ -0.92
CKS1BP1-201ENST00000555221 SMCPP49901 116 aaPredicted RBP9.3□□□□□ -0.92
CKS1BP1-201ENST00000555221 PKDCCQ504Y2 493 aa9.3□□□□□ -0.92
CKS1BP1-201ENST00000555221 C4orf17Q53FE4 359 aa9.3□□□□□ -0.92
CKS1BP1-201ENST00000555221 SH3PXD2AQ5TCZ1 1133 aa9.3□□□□□ -0.92
CKS1BP1-201ENST00000555221 ALKBH2Q6NS38 261 aa9.3□□□□□ -0.92
CKS1BP1-201ENST00000555221 NPM2Q86SE8 214 aaKnown RBP9.3□□□□□ -0.92
CKS1BP1-201ENST00000555221 ABTB2Q8N961 1025 aa9.3□□□□□ -0.92
CKS1BP1-201ENST00000555221 PHACTR1Q9C0D0 580 aa9.3□□□□□ -0.92
CKS1BP1-201ENST00000555221 NRG2O14511 850 aaPredicted RBP9.29□□□□□ -0.92
CKS1BP1-201ENST00000555221 MPSTP25325 297 aa9.29□□□□□ -0.92
CKS1BP1-201ENST00000555221 BRD2P25440 801 aaKnown RBP9.29□□□□□ -0.92
CKS1BP1-201ENST00000555221 ARHGAP4P98171 946 aa9.29□□□□□ -0.92
CKS1BP1-201ENST00000555221 ECM1Q16610 540 aa9.29□□□□□ -0.92
CKS1BP1-201ENST00000555221 WDR44Q5JSH3 913 aa9.29□□□□□ -0.92
CKS1BP1-201ENST00000555221 LYSMD3Q7Z3D4 306 aa9.29□□□□□ -0.92
CKS1BP1-201ENST00000555221 RNF217Q8TC41 542 aa9.29□□□□□ -0.92
CKS1BP1-201ENST00000555221 DCTN4Q9UJW0 460 aa9.29□□□□□ -0.92
CKS1BP1-201ENST00000555221 AMOTL2Q9Y2J4 779 aa9.29□□□□□ -0.92
CKS1BP1-201ENST00000555221 TNFRSF10BO14763 440 aa9.28□□□□□ -0.92
CKS1BP1-201ENST00000555221 GFRA3O60609 400 aa9.28□□□□□ -0.92
CKS1BP1-201ENST00000555221 C11orf91Q3C1V1 193 aa9.28□□□□□ -0.92
CKS1BP1-201ENST00000555221 DNAJC14Q6Y2X3 702 aaPredicted RBP9.28□□□□□ -0.92
CKS1BP1-201ENST00000555221 ZDHHC3Q9NYG2 299 aa9.28□□□□□ -0.92
CKS1BP1-201ENST00000555221 TTLL8A6PVC2 850 aa9.27□□□□□ -0.93
CKS1BP1-201ENST00000555221 TATP17735 454 aaPredicted RBP9.27□□□□□ -0.93
CKS1BP1-201ENST00000555221 MAPK1P28482 360 aa9.27□□□□□ -0.93
CKS1BP1-201ENST00000555221 LAPTM4AQ15012 233 aa9.27□□□□□ -0.93
CKS1BP1-201ENST00000555221 HIF1AQ16665 826 aa9.27□□□□□ -0.93
CKS1BP1-201ENST00000555221 NOM1Q5C9Z4 860 aaKnown RBP9.27□□□□□ -0.93
CKS1BP1-201ENST00000555221 FOXD4L4Q8WXT5 416 aaPredicted RBP9.27□□□□□ -0.93
CKS1BP1-201ENST00000555221 AIDAQ96BJ3 306 aa9.27□□□□□ -0.93
CKS1BP1-201ENST00000555221 LRFN2Q9ULH4 789 aa9.27□□□□□ -0.93
CKS1BP1-201ENST00000555221 GPC6Q9Y625 555 aaPredicted RBP9.27□□□□□ -0.93
CKS1BP1-201ENST00000555221 AXIN1O15169 862 aa9.26□□□□□ -0.93
CKS1BP1-201ENST00000555221 NDUFB5O43674 189 aa9.26□□□□□ -0.93
CKS1BP1-201ENST00000555221 TXLNAP40222 546 aa9.26□□□□□ -0.93
CKS1BP1-201ENST00000555221 POU4F2Q12837 409 aa9.26□□□□□ -0.93
CKS1BP1-201ENST00000555221 DGKZQ13574 1117 aa9.26□□□□□ -0.93
CKS1BP1-201ENST00000555221 NBPF10Q6P3W6 841 aaKnown RBP9.26□□□□□ -0.93
CKS1BP1-201ENST00000555221 PRICKLE2Q7Z3G6 844 aa9.26□□□□□ -0.93
CKS1BP1-201ENST00000555221 ZSCAN29Q8IWY8 852 aaPredicted RBP9.26□□□□□ -0.93
CKS1BP1-201ENST00000555221 CRIPAKQ8N1N5 446 aa9.26□□□□□ -0.93
CKS1BP1-201ENST00000555221 BMP1P13497 986 aa9.25□□□□□ -0.93
CKS1BP1-201ENST00000555221 EIF1AXP47813 144 aaKnown RBP9.25□□□□□ -0.93
CKS1BP1-201ENST00000555221 AAMPQ13685 434 aa9.25□□□□□ -0.93
CKS1BP1-201ENST00000555221 RHPN1Q8TCX5 695 aa9.25□□□□□ -0.93
CKS1BP1-201ENST00000555221 PHKA2P46019 1235 aa9.24□□□□□ -0.93
CKS1BP1-201ENST00000555221 TRIM46Q7Z4K8 759 aa9.24□□□□□ -0.93
CKS1BP1-201ENST00000555221 IFT43Q96FT9 208 aa9.24□□□□□ -0.93
CKS1BP1-201ENST00000555221 KLK14Q9P0G3 267 aa9.24□□□□□ -0.93
CKS1BP1-201ENST00000555221 BRPF3Q9ULD4 1205 aa9.24□□□□□ -0.93
CKS1BP1-201ENST00000555221 SOS2Q07890 1332 aaPredicted RBP9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms